release : v1.3.8

- refactor: 重写 IFD 评估为三层架构，引入 BFD 装箱与自定义 attention mask 批处理打分
- refactor: 重写 HumanEval 评估为函数式流水线，修复测试超时与动态 pass@k
- perf: 替换 paged KV cache 为 ContiguousCache，解码所有 group
- feat: 新增 ROUGE 评估脚本、JSONL 数据集 store、stream_chat 参数
- fix: 修复 IFD token-set 不对称、SFT position_ids 默认值、文档边界保留

.gitignore

@@ -5,8 +5,10 @@
 !*/
 
 # Allow specific file types and root files
-!*.py
+!astrai/**/*.py
-!*.sh
+!scripts/**/*.py
+!scripts/**/*.sh
+!tests/**/*.py
 
 # Allow GitHub files
 !/.github/**

CONTRIBUTING.md

@@ -5,7 +5,7 @@ Thank you for your interest in contributing! This document provides step-by-step
 ## Quick Start
 
 ```bash
-git clone https://github.com/your-username/AstrAI.git
+git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e ".[dev]"     # install with dev dependencies (pytest, ruff)
 ```

Dockerfile

@@ -1,7 +1,7 @@
 # AstrAI Dockerfile - Multi-stage Build (Optimized)
 
 # Build stage - use base image with minimal build tools
-FROM nvidia/cuda:12.6.0-base-ubuntu24.04 AS builder
+FROM ubuntu:24.04 AS builder
 
 WORKDIR /app
 
@@ -18,21 +18,22 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
 RUN python3.12 -m venv --copies /opt/venv
 ENV PATH="/opt/venv/bin:$PATH"
 
-# Copy source code and install dependencies
+# Copy source code and install (deps read from pyproject.toml)
 COPY astrai/ ./astrai/
 COPY pyproject.toml .
 RUN pip install --no-cache-dir --upgrade pip \
     && pip install --no-cache-dir . \
-    --extra-index-url https://download.pytorch.org/whl/cu126
+    --extra-index-url https://download.pytorch.org/whl/cu128
 
 # Production stage
-FROM nvidia/cuda:12.6.0-base-ubuntu24.04 AS production
+FROM ubuntu:24.04 AS production
 
 WORKDIR /app
 
-# Install Python 3.12 runtime
+# Install Python 3.12 runtime and healthcheck dependency
 RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
     python3.12 \
+    curl \
     && rm -rf /var/lib/apt/lists/*
 
 # Copy virtual environment from builder

README.md

@@ -9,9 +9,9 @@
 <div align="center">
   <img src="https://img.shields.io/badge/python-3.12+-blue.svg" alt="python">
   <img src="https://img.shields.io/badge/license-GPL--3.0-blue.svg" alt="license">
-  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?color=76bad9" alt="release">
+  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?label=Release&color=76bad9" alt="release">
-  <img src="https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fapi.github.com%2Frepos%2FViperEkura%2FAstrAI&query=%24.stargazers_count&label=stars&suffix=%20stars&color=76bad9" alt="stars">
+  <img src="https://img.shields.io/github/stars/ViperEkura/AstrAI?style=flat&label=Stars&color=76bad9" alt="stars">
-  <img src="https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fapi.github.com%2Frepos%2FViperEkura%2FAstrAI&query=%24.forks_count&label=forks&suffix=%20forks&color=76bad9" alt="forks">
+  <img src="https://img.shields.io/github/forks/ViperEkura/AstrAI?style=flat&label=Forks&color=76bad9" alt="forks">
 </div>
 <br>
 
@@ -28,7 +28,8 @@
 ## 📖 Table of Contents
 
 - [Features](#features)
-- [Quick Start](#quick-start)
+- [Getting Started](#getting-started)
+- [Demo](#demo)
 - [Documentation](#documentation)
 - [Contributing](#contributing)
 - [Community](#community)
@@ -49,39 +50,50 @@
 - 🤗 **HuggingFace-Style API**: AutoModel/AutoTokenizer APIs inspired by HuggingFace for easy model and tokenizer loading.
 - 🔌 **Dual API Compatibility**: Supports both OpenAI and Anthropic chat completion APIs out of the box.
 
-### Quick Start
+### Getting Started
 
-#### Installation
+End-to-end walkthrough in 5 steps:
+
+**1. Install**
 
 ```bash
 git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e .
+# pip install -e ".[dev]"    # optional: dev dependencies (pytest, ruff)
 ```
 
-For development dependencies:
+**2. Download model**
 
 ```bash
-pip install -e ".[dev]"
+python scripts/demo/download.py    # downloads 1B checkpoint to params/
 ```
 
-#### Download Pre-trained Model
+**3. Preprocess data**
 
-Download pre-trained model weights (1B bilingual checkpoint) to `params/`:
+Create `pretrain.json` (preprocessing config for `seq` strategy):
+
+```json
+{
+    "version": 1,
+    "input": {"sections": [{"field": "text", "action": "train"}]},
+    "preprocessing": {"max_seq_len": 2048},
+    "output": {"storage_format": "bin"}
+}
+```
 
 ```bash
-python scripts/demo/download.py
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c pretrain.json
 ```
 
-Or download manually from [HuggingFace](https://huggingface.co/ViperEk/KHAOSZ) into `params/`.
+**4. Train**
-
-#### Train a Model
 
 ```bash
 export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 nohup python scripts/tools/train.py \
     --nprocs=4 \
+    --parallel_mode=ddp \
     --train_type=seq \
     --data_root_path=/path/to/dataset \
     --param_path=/path/to/model \
@@ -101,15 +113,54 @@ nohup python scripts/tools/train.py \
     > out.log 2> err.log &
 ```
 
-Full reference at [Parameter Guide](assets/docs/params.md).
+**5. Serve & query**
 
-#### Generate Text
+```bash
+# Terminal 1: start server
+python scripts/tools/server.py --param_path ./params --device cuda
+
+# Terminal 2: query
+curl http://localhost:8000/v1/chat/completions \
+  -H "Content-Type: application/json" \
+  -d '{"messages":[{"role":"user","content":"Hello"}],"max_tokens":512}'
+```
+
+### Demo
+
+Check out the demos in the `scripts/demo/` folder:
+
+```bash
+# Download model weights (required before running demos)
+python scripts/demo/download.py                      # model → params/
+
+# Interactive streaming chat (multi-turn, maintains history)
+python scripts/demo/stream_chat.py
+# Type your message after >>, type !exit to quit
+
+# Batch generation (5 hardcoded prompts, non-streaming)
+python scripts/demo/generate_batch.py
+
+# Single-prompt autoregressive streaming
+python scripts/demo/generate_ar.py
+```
+
+All generation demos use `temperature=0.8`, `top_p=0.95`, `top_k=50`, `max_tokens=2048` by default and require `params/` to contain model weights (run `download.py` first).
+
+Watch a video walkthrough on [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6).
+
+---
+
+See [Documentation](#documentation) for full references beyond the examples above.
+
+#### Text Generation
+
+Batch generation from a JSONL file:
 
 ```bash
 python scripts/tools/generate.py \
-    --param_path /path/to/model \
+    --param_path ./params \
-    --input_json_file /path/to/input.json \
+    --input_json_file input.jsonl \
-    --output_json_file /path/to/output.json
+    --output_json_file output.jsonl
 ```
 
 #### Docker
@@ -123,9 +174,6 @@ docker build -t astrai:latest .
 # Run with GPU support
 docker run --gpus all -it astrai:latest
 
-# Run with specific GPUs
-docker run --gpus '"device=0,1"' -it astrai:latest
-
 # Run inference server
 docker run --gpus all -p 8000:8000 astrai:latest \
   python -m scripts.tools.server --port 8000 --device cuda
@@ -142,88 +190,42 @@ docker compose --profile cpu up -d
 
 > **Note**: `--gpus all` is required for CUDA support. Without it, `torch.cuda.is_available()` will return `False`.
 
-#### Start HTTP Server
+#### HTTP API Examples
 
-Start the inference server with OpenAI and Anthropic-compatible HTTP API:
+Additional request examples beyond the [Getting Started](#getting-started) flow:
 
 ```bash
-python -m scripts.tools.server --port 8000 --device cuda
-```
-
-Make requests:
-
-```bash
-# OpenAI-compatible
-curl -X POST http://localhost:8000/v1/chat/completions \
-  -H "Content-Type: application/json" \
-  -d '{
-    "messages": [{"role": "user", "content": "Hello"}],
-    "max_tokens": 512
-  }'
-
 # OpenAI-compatible streaming
 curl -X POST http://localhost:8000/v1/chat/completions \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"messages":[{"role":"user","content":"Tell a story"}],"stream":true,"max_tokens":500}'
-    "messages": [{"role": "user", "content": "Tell a story"}],
-    "stream": true,
-    "max_tokens": 500
-  }'
 
 # Anthropic-compatible
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","system":"You are a helpful assistant.","messages":[{"role":"user","content":"Hello"}],"max_tokens":512}'
-    "model": "astrai",
-    "system": "You are a helpful assistant.",
-    "messages": [{"role": "user", "content": "Hello"}],
-    "max_tokens": 512
-  }'
 
 # Anthropic-compatible streaming with stop sequences
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","messages":[{"role":"user","content":"Write a story"}],"max_tokens":500,"stream":true,"stop_sequences":["The end"]}'
-    "model": "astrai",
-    "messages": [{"role": "user", "content": "Write a story"}],
-    "max_tokens": 500,
-    "stream": true,
-    "stop_sequences": ["The end"]
-  }'
 
 # Health check
 curl http://localhost:8000/health
 ```
 
-#### Demo
+See [Inference Guide](assets/docs/inference.md) for SSE streaming format, error codes, and stats endpoint.
-
-Check out the demos in the `scripts/demo/` folder:
-
-```bash
-# Download pre‑processed data (required before running demos)
-python scripts/demo/download.py
-
-# Interactive streaming chat
-python scripts/demo/stream_chat.py
-
-# Batch generation
-python scripts/demo/generate_batch.py
-
-# Auto‑regressive generation
-python scripts/demo/generate_ar.py
-```
-
-Watch a video walkthrough on [bilibili](https://www.bilibili.com/video/BV1z5RPYHEkd).
 
 ### Documentation
 
 | Document | Description |
 |----------|-------------|
-| [Parameter Guide](./assets/docs/params.md) | Training & inference parameters |
+| [CLI Reference](./assets/docs/params.md) | Parameters for all CLI tools (train, server, generate, preprocess) |
 | [Architecture](./assets/docs/architecture.md) | System architecture, class diagram & design patterns |
 | [Training](./assets/docs/training.md) | Training loop, strategies & formulas |
 | [Inference](./assets/docs/inference.md) | KVCache, continuous batching, sampling & HTTP API |
 | [Data Flow](./assets/docs/dataflow.md) | Data pipeline, storage backends & dataset architecture |
+| [Preprocessing](./assets/docs/preprocessing.md) | Declarative JSON-driven data preprocessing |
 
 ### Contributing
 

assets/docs/README-zh-CN.md

@@ -15,9 +15,9 @@
 <div align="center">
   <img src="https://img.shields.io/badge/python-3.12+-blue.svg" alt="python">
   <img src="https://img.shields.io/badge/license-GPL--3.0-blue.svg" alt="license">
-  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?color=76bad9" alt="release">
+  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?label=Release&color=76bad9" alt="release">
-  <img src="https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fapi.github.com%2Frepos%2FViperEkura%2FAstrAI&query=%24.stargazers_count&label=stars&suffix=%20stars&color=76bad9" alt="stars">
+  <img src="https://img.shields.io/github/stars/ViperEkura/AstrAI?style=flat&label=Stars&color=76bad9" alt="stars">
-  <img src="https://img.shields.io/badge/dynamic/json?url=https%3A%2F%2Fapi.github.com%2Frepos%2FViperEkura%2FAstrAI&query=%24.forks_count&label=forks&suffix=%20forks&color=76bad9" alt="forks">
+  <img src="https://img.shields.io/github/forks/ViperEkura/AstrAI?style=flat&label=Forks&color=76bad9" alt="forks">
 </div>
 
 <br>
@@ -34,7 +34,8 @@
 ## 📖 目录
 
 - [特性](#特性)
-- [快速开始](#快速开始)
+- [快速上手](#快速上手)
+- [演示](#演示)
 - [文档](#文档)
 - [贡献](#贡献)
 - [社区](#社区)
@@ -55,39 +56,50 @@
 - 🤗 **HuggingFace 风格 API**: 类 HuggingFace 的 AutoModel/AutoTokenizer 接口，方便加载模型和分词器。
 - 🔌 **双 API 兼容**: 同时支持 OpenAI 和 Anthropic 聊天补全 API，开箱即用。
 
-### 快速开始
+### 快速上手
 
-#### 安装
+端到端演示，只需 5 步：
+
+**1. 安装**
 
 ```bash
 git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e .
+# pip install -e ".[dev]"    # 可选：开发依赖（pytest, ruff）
 ```
 
-安装开发依赖：
+**2. 下载模型**
 
 ```bash
-pip install -e ".[dev]"
+python scripts/demo/download.py    # 下载 1B 检查点到 params/
 ```
 
-#### 下载预训练模型
+**3. 预处理数据**
 
-下载预训练模型权重（1B 双语检查点）到 `params/` 目录：
+创建 `pretrain.json`（`seq` 策略的预处理配置）：
+
+```json
+{
+    "version": 1,
+    "input": {"sections": [{"field": "text", "action": "train"}]},
+    "preprocessing": {"max_seq_len": 2048},
+    "output": {"storage_format": "bin"}
+}
+```
 
 ```bash
-python scripts/demo/download.py
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c pretrain.json
 ```
 
-或从 [HuggingFace](https://huggingface.co/ViperEk/KHAOSZ) 手动下载放入 `params/`。
+**4. 训练**
-
-#### 训练模型
 
 ```bash
 export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 nohup python scripts/tools/train.py \
     --nprocs=4 \
+    --parallel_mode=ddp \
     --train_type=seq \
     --data_root_path=/path/to/dataset \
     --param_path=/path/to/model \
@@ -107,15 +119,54 @@ nohup python scripts/tools/train.py \
     > out.log 2> err.log &
 ```
 
-完整参数列表见[参数说明](./params.md)。
+**5. 启动服务并调用**
+
+```bash
+# 终端 1：启动服务
+python scripts/tools/server.py --param_path ./params --device cuda
+
+# 终端 2：发起请求
+curl http://localhost:8000/v1/chat/completions \
+  -H "Content-Type: application/json" \
+  -d '{"messages":[{"role":"user","content":"你好"}],"max_tokens":512}'
+```
+
+### 演示
+
+查看 `scripts/demo/` 文件夹中的演示：
+
+```bash
+# 下载模型权重（运行演示前必需）
+python scripts/demo/download.py                      # model → params/
+
+# 交互式流式聊天（多轮对话，保持历史记录）
+python scripts/demo/stream_chat.py
+# 在 >> 后输入消息，输入 !exit 退出
+
+# 批量生成（5 条硬编码提示词，非流式）
+python scripts/demo/generate_batch.py
+
+# 单条提示词自回归流式生成
+python scripts/demo/generate_ar.py
+```
+
+所有生成演示默认使用 `temperature=0.8`、`top_p=0.95`、`top_k=50`、`max_tokens=2048`，需要 `params/` 目录包含模型权重（请先运行 `download.py`）。
+
+观看 [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6) 上的视频演示。
+
+---
+
+更多选项请参考[文档](#文档)。
 
 #### 文本生成
 
+从 JSONL 文件批量生成：
+
 ```bash
 python scripts/tools/generate.py \
-    --param_path /path/to/model \
+    --param_path ./params \
-    --input_json_file /path/to/input.json \
+    --input_json_file input.jsonl \
-    --output_json_file /path/to/output.json
+    --output_json_file output.jsonl
 ```
 
 #### Docker
@@ -129,9 +180,6 @@ docker build -t astrai:latest .
 # 启用 GPU 运行
 docker run --gpus all -it astrai:latest
 
-# 指定特定 GPU
-docker run --gpus '"device=0,1"' -it astrai:latest
-
 # 运行推理服务
 docker run --gpus all -p 8000:8000 astrai:latest \
   python -m scripts.tools.server --port 8000 --device cuda
@@ -148,88 +196,42 @@ docker compose --profile cpu up -d
 
 > **注意**: 必须使用 `--gpus all` 才能启用 CUDA 支持，否则 `torch.cuda.is_available()` 将返回 `False`。
 
-#### 启动 HTTP 服务
+#### HTTP API 示例
 
-启动推理服务器，支持 OpenAI 和 Anthropic 兼容的 HTTP API：
+除[快速上手](#快速上手)流程外，更多请求示例：
 
 ```bash
-python -m scripts.tools.server --port 8000 --device cuda
-```
-
-发起请求：
-
-```bash
-# OpenAI 兼容
-curl -X POST http://localhost:8000/v1/chat/completions \
-  -H "Content-Type: application/json" \
-  -d '{
-    "messages": [{"role": "user", "content": "你好"}],
-    "max_tokens": 512
-  }'
-
 # OpenAI 兼容流式
 curl -X POST http://localhost:8000/v1/chat/completions \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"messages":[{"role":"user","content":"讲个故事"}],"stream":true,"max_tokens":500}'
-    "messages": [{"role": "user", "content": "讲个故事"}],
-    "stream": true,
-    "max_tokens": 500
-  }'
 
 # Anthropic 兼容
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","system":"你是一个乐于助人的助手。","messages":[{"role":"user","content":"你好"}],"max_tokens":512}'
-    "model": "astrai",
-    "system": "你是一个乐于助人的助手。",
-    "messages": [{"role": "user", "content": "你好"}],
-    "max_tokens": 512
-  }'
 
 # Anthropic 兼容流式并设置停止序列
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","messages":[{"role":"user","content":"写个故事"}],"max_tokens":500,"stream":true,"stop_sequences":["结束"]}'
-    "model": "astrai",
-    "messages": [{"role": "user", "content": "写个故事"}],
-    "max_tokens": 500,
-    "stream": true,
-    "stop_sequences": ["结束"]
-  }'
 
 # 健康检查
 curl http://localhost:8000/health
 ```
 
-#### 演示
+SSE 流式格式、错误码和统计端点详见[推理文档](./inference.md)。
-
-查看 `scripts/demo/` 文件夹中的演示：
-
-```bash
-# 下载预处理数据（运行演示前必需）
-python scripts/demo/download.py
-
-# 交互式流式聊天
-python scripts/demo/stream_chat.py
-
-# 批量生成
-python scripts/demo/generate_batch.py
-
-# 自回归生成
-python scripts/demo/generate_ar.py
-```
-
-观看 [bilibili](https://www.bilibili.com/video/BV1z5RPYHEkd) 上的视频演示。
 
 ### 文档
 
 | 文档 | 说明 |
 |------|------|
-| [参数说明](./params.md) | 训练与推理参数配置 |
+| [CLI 参考](./params.md) | 所有 CLI 工具参数（训练、服务、生成、预处理） |
 | [架构文档](./architecture.md) | 系统架构、类图与设计模式 |
 | [训练文档](./training.md) | 训练循环、策略与公式 |
 | [推理文档](./inference.md) | KVCache、连续批处理、采样与 HTTP API |
 | [数据流程](./dataflow.md) | 数据管道、存储后端与数据集架构 |
+| [数据预处理](./preprocessing.md) | 声明式 JSON 驱动数据预处理 |
 
 ### 贡献
 

assets/docs/dataflow.md

@@ -1,46 +1,98 @@
 # Data Flow
 
-This document describes the data pipeline: from raw text to model input tensors.
+This document describes the data pipeline: from raw text to model input tensors. For creating preprocessing configs, see [Preprocessing Guide](preprocessing.md).
+
+## Contents
+
+- [Overview](#overview)
+- [Data Preparation](#data-preparation) — tokenization, format detection, backends
+- [Data Keys by Training Type](#data-keys-by-training-type)
+- [Dataset Architecture](#dataset-architecture)
+- [Sampler](#sampler)
+- [DataLoader](#dataloader)
 
 ## Overview
 
 ```
-Raw Text → AutoTokenizer → Token IDs → .h5/.json → Dataset → Sampler → DataLoader → Training/Inference
+JSONL Lines → Pipeline (mask builder) → Tokenized Tensors
+                                              ↓
+                                      .h5 or .bin storage
+                                              ↓
+                                      Store.load()
+                                              ↓
+                                      Store.fetch(begin, end, keys)
+                                              ↓
+                                      BaseDataset.__getitem__(idx)
+                                              ↓
+                                      Sampler → DataLoader → Training / Inference
 ```
 
 ## Data Preparation
 
-Raw text is tokenized via `AutoTokenizer.encode()` and saved as HDF5 (`.h5`) or JSON (`.json`/`.jsonl`) files with keyed tensor groups.
+Raw text is tokenized via `AutoTokenizer.encode()` and saved as HDF5 (`.h5`) or binary (`.bin` + `meta.json`) files with keyed tensor groups.
+
+### Tokenization
+
+The `Pipeline` reads JSONL lines, applies the mask builder (see [Preprocessing](preprocessing.md)), and produces flat token sequences:
+
+```python
+# Per JSONL line: messages → chat template → token IDs + loss mask
+tokens = tokenizer.encode(rendered_text)        # List[int]
+loss_mask = [0, 0, 0, 1, 1, 1, 1, 1, 1]        # 0=masked, 1=train
+# Stored as flat tensors, packed with other lines by packing strategy
+```
+
+The output `meta.json` records the storage format, key names, dtype, total token count, and tensor shapes for each shard.
+
+### Format Detection
+
+`detect_format(load_path)` inspects the path:
+
+- If `load_path` is a file: checks suffix — `.h5`/`.hdf5` → `"h5"`, unknown suffix raises `ValueError`
+- If `load_path` is a directory: recursively globs for `*.h5`/`*.hdf5` files → `"h5"`, or `*.bin` + `**/meta.json` → `"bin"`
+
+### Store Backends
 
 Storage format is auto-detected by `detect_format()`; backends are dispatched via registry:
 
 ```
-StorageFactory.create("h5")   → H5Storage
+StoreFactory.create("h5")  → H5Store
-StorageFactory.create("json") → JSONStorage
+StoreFactory.create("bin") → MmapStore
 ```
 
-Both support shared memory via `.share_memory_()`.
+**H5Store**: Reads HDF5 files, supports `share_memory_()` for multi-process DataLoader workers (copies tensors to shared memory).
+
+**MmapStore**: Memory-maps `.bin` files. OS page cache sharing is native — no explicit `share_memory_()` needed. Uses `torch.from_numpy(np.memmap(...))`.
+
+Both backends normalise tensors into `Store._data[Dict[str, List[Tensor]]]` + `Store._cum[Dict[str, List[int]]]` (cumulative lengths for bisect-based indexing).
 
 ## Data Keys by Training Type
 
 | Type | Storage Keys |
 |------|-------------|
 | `seq` | `sequence` (→ input_ids, target_ids via offset-by-1) |
-| `sft` | `sequence`, `loss_mask` |
+| `sft` | `sequence`, `loss_mask`, `position_ids` |
 | `dpo` | `chosen`, `rejected`, `chosen_mask`, `rejected_mask` |
 | `grpo` | `prompts`, `responses`, `masks`, `rewards` |
 
 ## Dataset Architecture
 
 ```
-DatasetFactory.load(train_type, path, window_size, stride)
+DatasetFactory.load(train_type, load_path, window_size, stride=None, storage_type=None)
-  → StorageFactory.create(detect_format(path))
+  → BaseDataset.load(load_path, storage_type=None)
-    → MultiSegmentFetcher(BaseSegmentFetcher per key)
+    → detect_format(load_path)
+    → StoreFactory.create(storage_type)
+    → Store.load(load_path)
+      → _normalize(raw)  # base Store, shared by both backends
+        → Store._data[Dict[str, List[Tensor]]] + _cum[Dict[str, List[int]]]
           → BaseDataset.__getitem__(idx)
-        → sliding window [begin, end) via get_index(idx)
+            → get_index(idx) → [begin, end)
+            → Store.fetch(begin, end, keys) → Tensor / Dict[str, Tensor]
 ```
 
-`window_size` = max input length, `stride` = step between consecutive samples.
+`window_size` = max input length, `stride` = step between consecutive samples (defaults to `window_size`, optional). `storage_type` defaults to `None` (auto-detect via `detect_format`).
+
+`Store.fetch(begin, end, keys)` accepts a single key (`str`) returning a `Tensor`, or a list of keys returning `Dict[str, Tensor]`. Internally uses `bisect` across multi-segment tensors. Raises `RuntimeError("Store not loaded")` if called before `load()`.
 
 ## Sampler
 
@@ -54,4 +106,4 @@ DatasetFactory.load(train_type, path, window_size, stride)
 
 Standard PyTorch `DataLoader` with configurable `batch_size`, `num_workers`, `pin_memory`, `prefetch_factor`. Sampler produces indices; dataloader fetches tensor batches via `__getitem__`.
 
-> Document Update Time: 2026-05-17
+> Document Update Time: 2026-06-19

assets/docs/inference.md

@@ -1,5 +1,16 @@
 # Inference
 
+## Contents
+
+- [KV Cache](#kv-cache)
+- [KVCache System](#kvcache-system)
+- [Continuous Batching](#continuous-batching)
+- [Sampling](#sampling-strategy-pattern)
+- [Protocol Handlers](#protocol-handlers-strategy-pattern)
+- [Engine & GenerateResult](#engine--generateresult)
+- [HTTP API](#http-api) — endpoints, SSE, errors, stats
+- [Engine API](#engine-api)
+
 ## KV Cache
 
 At decode time, only the last query token matters. All previous K/V are cached to avoid recomputation:
@@ -12,16 +23,16 @@ RoPE is applied **before** KV cache write, not after — otherwise position enco
 
 ## KVCache System
 
-Six classes working together:
+Seven classes working together:
 
 ```
 KVCache (facade)
-  ├── Allocator        bitmask-based page allocator + ref-count + LRU eviction
+  ├── PagePool         orchestrates page allocation + prefix matching
-  ├── PrefixCache      hash-based prefix matching (page_hash via rolling hash)
+  │     ├── Allocator   bitmask-based page allocator + ref-count + LRU eviction (inside PagePool)
-  ├── PagePool         orchestrates Allocator + PrefixCache
+  │     └── PrefixCache hash-based prefix matching (page_hash via polynomial hash) (inside PagePool)
   ├── TaskTable        maps task_id → page_table + cached token count
   ├── Storage          k_cache / v_cache tensors (n_layers × n_pages × page_size × n_kv_heads × head_dim)
-  └── KvcacheView      bundles Storage + page_table + total_len for attention layers
+  └── KvcacheView      bundles Storage + page_table + total_len for attention layers (returned by bind())
 ```
 
 `KVCache.bind(page_table, total_len)` returns a `KvcacheView` used by attention layers via `write()` / `gather()`.
@@ -40,26 +51,33 @@ KVCache (facade)
 ## Sampling (Strategy Pattern)
 
 ```
-BaseSamplingStrategy → TemperatureStrategy → TopKStrategy → TopPStrategy
+BaseSamplingStrategy (ABC)
+  ├── TemperatureStrategy
+  ├── TopKStrategy
+  ├── TopPStrategy
+  └── SamplingPipeline
 ```
 
 `SamplingPipeline` composes them: Temperature → Top-K → Top-P → softmax → multinomial.  
 `sample()` is a convenience shortcut for one-shot usage.
 
-## Protocol Handlers (Template Method)
+## Protocol Handlers (Strategy Pattern)
 
 ```python
-class ProtocolHandler(ABC):
+class ProtocolHandler:  # concrete orchestrator
-    def handle(self):
+    def __init__(self, request, engine, builder): ...
-        ctx = StreamContext(...)
+    async def handle(self):
+        prompt, ctx, stops = builder.prepare(request, engine)
         agen = engine.generate_async(prompt, ...)
-        if stream: self._handle_stream(agen, ctx)
+        if stream: self._handle_stream(agen, ctx, stops)
-        else:      self._handle_non_stream(agen, ctx)
+        else:      return await self._handle_non_stream(agen, ctx, stops)
 ```
 
-Subclass hooks: `build_prompt()`, `create_response_id()`, `format_stream_start/token/end()`, `format_non_stream_response()`.
+`ResponseBuilder` (ABC): `prepare()`, `format_stream_start()`, `format_chunk()`, `format_stream_end()`, `format_response()`.
 
-`OpenAIHandler` → `/v1/chat/completions`, `AnthropicHandler` → `/v1/messages`.
+`OpenAIResponseBuilder` → `/v1/chat/completions`, `AnthropicResponseBuilder` → `/v1/messages`.
+
+Adding a protocol = one builder file, no handler subclassing needed.
 
 ## Engine & GenerateResult
 
@@ -67,7 +85,9 @@ Subclass hooks: `build_prompt()`, `create_response_id()`, `format_stream_start/t
 InferenceEngine
   ├── generate(prompt, stream, ...) → str | List[str] | Generator
   ├── generate_with_request(req)    → same
-  └── generate_async(prompt, ...)   → AsyncGenerator
+  ├── generate_async(prompt, ...)   → AsyncGenerator
+  ├── get_stats()                   → Dict
+  └── shutdown()
 ```
 
 `GenerateResult` uses `Condition` for non-streaming (`wait_completion()`) and `Event` for streaming (`wait()`). Stream callback is `cb(token)`.
@@ -94,12 +114,14 @@ Response:
 {
   "id": "chatcmpl-abc123",
   "object": "chat.completion",
-  "choices": [{"message": {"role": "assistant", "content": "Hello!"}, "finish_reason": "stop"}],
+  "created": 1717000000,
+  "model": "astrai",
+  "choices": [{"index": 0, "message": {"role": "assistant", "content": "Hello!"}, "finish_reason": "stop"}],
   "usage": {"prompt_tokens": 5, "completion_tokens": 10, "total_tokens": 15}
 }
 ```
 
-Streaming SSE: `data: {"choices":[{"delta":{"role":"assistant"}}]}` → token chunks → `data: [DONE]`
+Streaming SSE: `object: "chat.completion.chunk"` — starts with role delta, then token chunks, ends with finish chunk + usage stats, then `data: [DONE]`.
 
 ### Anthropic
 
@@ -116,12 +138,90 @@ Supports `stop_sequences` and streaming via `event: content_block_delta`.
 | Param | Type | Default | Description |
 |-------|------|---------|-------------|
 | `messages` | List[dict] | required | Chat messages (role, content) |
-| `temperature` | float | 1.0 | Sampling temperature (0.0–2.0) |
-| `top_p` | float | 1.0 | Nucleus threshold |
 | `top_k` | int | 50 | Top-k count |
-| `max_tokens` | int | None | Max generation length |
+| `top_p` | float | 1.0 | Nucleus threshold |
+| `temperature` | float | 1.0 | Sampling temperature (> 0.0) |
+| `max_tokens` | Optional[int] | None | Max generation length |
 | `stream` | bool | False | Stream output |
 
+### SSE Streaming Format
+
+**OpenAI** (`/v1/chat/completions`, `stream=true`):
+
+```
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":...,"model":"astrai",
+       "choices":[{"index":0,"delta":{"role":"assistant"},"finish_reason":null}]}
+
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":0,"model":"astrai",
+       "choices":[{"index":0,"delta":{"content":"Hello"},"finish_reason":null}]}
+
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":...,"model":"astrai",
+       "choices":[{"index":0,"delta":{},"finish_reason":"stop"}]}
+
+data: {"prompt_tokens":5,"completion_tokens":1,"total_tokens":6}
+
+data: [DONE]
+```
+
+**Anthropic** (`/v1/messages`, `stream=true`):
+
+```
+event: message_start
+data: {"type":"message_start","message":{"id":"msg_...","model":"astrai","role":"assistant",
+       "content":[],"usage":{"input_tokens":0}}}
+
+event: content_block_start
+data: {"type":"content_block_start","index":0,"content_block":{"type":"text","text":""}}
+
+event: content_block_delta
+data: {"type":"content_block_delta","index":0,"delta":{"type":"text_delta","text":"Hello"}}
+
+event: content_block_stop
+data: {"type":"content_block_stop","index":0}
+
+event: message_delta
+data: {"type":"message_delta","delta":{"stop_reason":"end_turn","stop_sequence":null},"usage":{...}}
+
+event: message_stop
+data: {"type":"message_stop"}
+```
+
+### Error Responses
+
+The server returns standard HTTP status codes. Pydantic validation errors (e.g. missing required fields)
+are handled automatically by FastAPI with 422 status. The only application-level error is engine initialization:
+
+| Status | Meaning |
+|--------|---------|
+| 200 | Success |
+| 422 | Unprocessable entity (Pydantic validation) |
+| 503 | Service unavailable (model not loaded, engine not ready) |
+
+Error response body (503):
+
+```json
+{
+    "detail": "Engine not initialized"
+}
+```
+
+### Stats Endpoint
+
+```
+GET /stats
+```
+
+Response:
+
+```json
+{
+    "total_tasks": 128,
+    "total_tokens": 10240,
+    "active_tasks": 3,
+    "waiting_queue": 2
+}
+```
+
 ## Engine API
 
 ```python
@@ -134,7 +234,8 @@ engine.generate("Hello", stream=True)           # -> Generator[str]
 engine.generate(["A", "B"], stream=True)        # -> Generator[Tuple[int, str]]
 
 # Async
-await engine.generate_async("Hello", ...)       # -> AsyncGenerator[str]
+async for token in engine.generate_async("Hello", ...):    # -> AsyncGenerator[str]
+    print(token)
 ```
 
-> Document Update Time: 2026-05-17
+> Document Update Time: 2026-06-19

assets/docs/params.md

@@ -1,4 +1,11 @@
-# Parameter Documentation
+# CLI Parameter Reference
+
+## Contents
+
+- [Training Parameters](#training-parameters)
+- [Inference Server](#inference-server-serverpy)
+- [Generate](#generate-generatepy)
+- [Preprocess](#preprocess-preprocesspy)
 
 ## Training Parameters
 
@@ -46,25 +53,63 @@
 | `--ckpt_interval` | Iterations between checkpoints | 5000 |
 | `--ckpt_dir` | Checkpoint save directory | checkpoint |
 | `--start_epoch` | Resume from epoch (0 = from scratch) | 0 |
-| `--start_batch` | Resume from batch iteration | 0 |
+| `--start_samples` | Resume from sample count per rank | 0 |
+
+### Validation
+
+| Parameter | Description | Default |
+|-----------|-------------|---------|
+| `--val_split` | Ratio to split from training dataset for validation (e.g. 0.05) | None |
+| `--val_step` | Number of optimizer steps between validation runs | 1000 |
+
+### Logging
+
+| Parameter | Description | Default |
+|-----------|-------------|---------|
+| `--log_dir` | Directory for metric logs | checkpoint/logs |
+| `--log_interval` | Number of optimizer steps between metric logs | 1 |
+| `--metrics` | Metrics to log (e.g. --metrics loss lr val_loss) | ["loss", "lr", "grad_norm"] |
+
+### Gradient Checkpointing
+
+| Parameter | Description | Default |
+|-----------|-------------|---------|
+| `--gradient_checkpointing` | Enable activation checkpointing for DecoderBlock modules | False |
 
 ### Distributed Training
 
 | Parameter | Description | Default |
 |-----------|-------------|---------|
 | `--nprocs` | Number of GPUs / processes | 1 |
+| `--parallel_mode` | Parallel strategy (`none`, `ddp`, or `fsdp`) | none |
 | `--device_type` | Device type | cuda |
+| `--start_method` | Multiprocessing start method (`spawn`, `fork`, `forkserver`) | spawn |
+| `--backend` | Distributed training backend | nccl |
+| `--master_addr` | Master node address | localhost |
+| `--master_port` | Master node port | 29500 |
 
 ### Strategy-specific
 
 | Parameter | Description | Default | Used by |
 |-----------|-------------|---------|---------|
 | `--dpo_beta` | DPO beta value | 0.1 | `dpo` |
-| `--label_smoothing` | Label smoothing for cross-entropy loss | 0.05 | `seq`, `sft` |
+| `--label_smoothing` | Label smoothing for cross-entropy loss | 0.0 | `seq`, `sft` |
 | `--group_size` | GRPO group size | 4 | `grpo` |
 | `--grpo_clip_eps` | GRPO clipping epsilon | 0.2 | `grpo` |
 | `--grpo_kl_coef` | GRPO KL penalty coefficient | 0.01 | `grpo` |
 | `--grpo_sync_interval` | GRPO ref_model sync interval (steps) | 200 | `grpo` |
+| `--neftune_alpha` | NEFTune noise alpha (0=disabled, typical: 5.0) | 0.0 | `sft` |
+
+### Scheduler
+
+| Parameter | Description | Default |
+|-----------|-------------|---------|
+| `--schedule_type` | LR scheduler type (`cosine`, `sgdr`, `wsd`) | cosine |
+| `--min_rate` | Minimum LR as fraction of base LR | None (scheduler default) |
+| `--cycle_length` | SGDR first cycle length in steps | None (total_steps - warmup_steps) |
+| `--t_mult` | SGDR cycle length multiplier per restart | 2 |
+| `--stable_steps` | WSD stable plateau steps | None (required for wsd) |
+| `--decay_steps` | WSD decay steps | None (total_steps - warmup_steps - stable_steps) |
 
 ### Usage Example
 
@@ -73,6 +118,7 @@ export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 nohup python scripts/tools/train.py \
     --nprocs=4 \
+    --parallel_mode=ddp \
     --train_type=seq \
     --data_root_path=/path/to/dataset \
     --param_path=/path/to/model \
@@ -94,4 +140,64 @@ nohup python scripts/tools/train.py \
 
 ---
 
-> Document Update Time: 2026-05-17
+## Inference Server (`server.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `--host` | str | `0.0.0.0` | Host address |
+| `--port` | int | `8000` | Port number |
+| `--param_path` | path | `project_root/params` | Path to model parameters |
+| `--device` | str | `cuda` | Device to load model on |
+| `--dtype` | str | `bfloat16` | Model weights dtype (`bfloat16`, `float16`, `float32`) |
+| `--max_batch_size` | int | `16` | Maximum batch size for continuous batching |
+| `--reload` | flag | `False` | Enable auto-reload for development |
+
+Usage:
+```bash
+python scripts/tools/server.py --param_path ./params --device cuda --dtype bfloat16
+```
+
+See [Inference Guide](inference.md) for HTTP API documentation.
+
+## Generate (`generate.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `--param_path` | str | required | Path to the model directory |
+| `--input_json_file` | str | required | Path to the input JSONL file |
+| `--output_json_file` | str | required | Path to the output JSONL file |
+| `--question_key` | str | `question` | Key for the question in input JSON |
+| `--response_key` | str | `response` | Key for the response in output JSON |
+| `--temperature` | float | `0.60` | Sampling temperature |
+| `--top_k` | int | `30` | Top-k filtering |
+| `--top_p` | float | `0.95` | Nucleus sampling threshold |
+| `--batch_size` | int | `1` | Batch size for generation |
+| `--max_tokens` | int | model config `max_len` | Maximum tokens to generate |
+
+Usage:
+```bash
+python scripts/tools/generate.py \
+    --param_path ./params \
+    --input_json_file input.jsonl \
+    --output_json_file output.jsonl
+```
+
+## Preprocess (`preprocess.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `input_files` | path(s) | required | Input JSONL file(s), supports glob (`data/*.jsonl`) |
+| `--output_dir`, `-o` | path | required | Output directory for processed data |
+| `--config`, `-c` | path | required | Preprocessing pipeline config (JSON) |
+| `--tokenizer_path` | str | `params` | Path to tokenizer directory |
+
+Usage:
+```bash
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c sft.json
+```
+
+See [Preprocessing Guide](preprocessing.md) for config file format and examples.
+
+---
+
+> Document Update Time: 2026-06-19

assets/docs/preprocessing.md

@@ -0,0 +1,364 @@
+# Preprocessing Pipeline
+
+Declarative JSON-driven data preprocessing. One `SectionedMaskBuilder` handles all formats via `input.sections` (single-output) or `input.sources` (multi-output).
+
+## Contents
+
+- [Philosophy](#philosophy)
+- [Config Structure](#config-structure)
+- [Quick Start](#quick-start) — SFT Chat, SFT Instruction, Pretrain, DPO, GRPO examples
+- [Configuration Reference](#configuration-reference) — all fields
+- [Mask Algorithm](#mask-algorithm)
+- [Output Layout](#output-layout)
+- [CLI](#cli)
+- [Python API](#python-api)
+
+## Philosophy
+
+| Component | Responsibility |
+|-----------|---------------|
+| `tokenizer_config.json` (`chat_template`) | Formatting -- how roles become tokens |
+| `pipeline.json` (`mask`) | Masking -- which roles participate in training |
+
+A single config file captures the entire pipeline, reusable and version-controllable.
+
+## Config Structure
+
+```json
+{
+  "version":       1,
+  "input":         {},   // sections (single) or sources (multi)
+  "mask":          {},   // role -> "train" | "mask"
+  "mask_default":  "mask",
+  "preprocessing": {},
+  "output":        {}
+}
+```
+
+### Section Fields
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `field` | str | -- | JSONL key to read |
+| `action` | str | -- | `"train"` / `"mask"` / `"$role"` |
+| `template` | bool | `false` | Apply `chat_template` per message |
+| `add_special_tokens` | bool | `true` for first non-template section | Add special tokens during encode |
+
+### Source Fields (multi-output mode)
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `sections` | list[dict] | -- | Same as single-output section list |
+| `list_field` | bool | `false` | JSONL field holds a list; tokenise each element |
+| `mask_key` | str | `"{key}_mask"` | Explicit output key for loss mask |
+
+---
+
+## Quick Start
+
+### SFT Chat
+
+Input JSONL:
+
+```json
+{"messages": [{"role": "system", "content": "You are helpful."}, {"role": "user", "content": "Hi"}, {"role": "assistant", "content": "Hello!"}]}
+```
+
+Config:
+
+```json
+{
+  "input": {
+    "sections": [
+      {"field": "messages", "action": "$role", "template": true}
+    ]
+  },
+  "mask": {
+    "system": "mask",
+    "user": "mask",
+    "assistant": "train"
+  },
+  "mask_default": "mask",
+  "preprocessing": {
+    "max_seq_len": 2048
+  },
+  "output": {
+    "storage_format": "bin",
+    "dtype": {"loss_mask": "bool"}
+  }
+}
+```
+
+Output keys: `sequence` (int32), `loss_mask` (bool)
+
+### SFT Instruction
+
+Input JSONL:
+
+```json
+{"prompt": "Translate to French: Hello", "response": "Bonjour"}
+```
+
+Config:
+
+```json
+{
+  "input": {
+    "sections": [
+      {"field": "prompt",   "action": "mask", "add_special_tokens": true},
+      {"field": "response", "action": "train"}
+    ]
+  },
+  "mask_default": "mask",
+  "preprocessing": {
+    "max_seq_len": 2048
+  }
+}
+```
+
+Output keys: `sequence`, `loss_mask`
+
+### Pretrain
+
+Input JSONL:
+
+```json
+{"text": "Artificial Intelligence is a field of computer science..."}
+```
+
+Config:
+
+```json
+{
+  "input": {
+    "sections": [
+      {"field": "text", "action": "train"}
+    ]
+  },
+  "preprocessing": {
+    "max_seq_len": 8192,
+    "min_chars": 100
+  }
+}
+```
+
+Output keys: `sequence` (no `loss_mask` — all tokens trained)
+
+### DPO
+
+Input JSONL:
+
+```json
+{"chosen": [{"role": "user", "content": "What is 2+2?"}, {"role": "assistant", "content": "4"}], "rejected": [{"role": "user", "content": "What is 2+2?"}, {"role": "assistant", "content": "5"}]}
+```
+
+Config:
+
+```json
+{
+  "input": {
+    "sources": {
+      "chosen": {
+        "sections": [
+          {"field": "chosen", "action": "$role", "template": true}
+        ]
+      },
+      "rejected": {
+        "sections": [
+          {"field": "rejected", "action": "$role", "template": true}
+        ]
+      }
+    }
+  },
+  "mask": {
+    "user": "mask",
+    "assistant": "train"
+  },
+  "mask_default": "mask"
+}
+```
+
+Output keys: `chosen`, `chosen_mask`, `rejected`, `rejected_mask`
+
+### GRPO
+
+Input JSONL:
+
+```json
+{"prompt": [{"role": "user", "content": "What is 2+2?"}], "responses": ["4", "Five", "Four"], "rewards": [1.0, 0.3, 0.8]}
+```
+
+Config:
+
+```json
+{
+  "input": {
+    "sources": {
+      "prompts": {
+        "sections": [
+          {"field": "prompt", "action": "mask", "template": true}
+        ]
+      },
+      "responses": {
+        "sections": [
+          {"field": "responses", "action": "train"}
+        ],
+        "list_field": true,
+        "mask_key": "masks"
+      },
+      "rewards": {
+        "sections": [
+          {"field": "rewards", "action": "value"}
+        ]
+      }
+    }
+  },
+  "mask": {
+    "user": "mask",
+    "assistant": "train"
+  },
+  "mask_default": "mask"
+}
+```
+
+Output keys: `prompts`, `prompts_mask`, `responses`, `masks`, `rewards` (float32)
+
+- `action: "value"` — extract raw values from JSONL without tokenisation
+- `list_field: true` — tokenise each list element independently, then concatenate
+- `mask_key: "masks"` — rename the auto-generated mask key (default: `responses_mask`)
+- `prompts_mask` is auto-generated (all masked) and unused by GRPOStrategy
+
+---
+
+## Configuration Reference
+
+### `input`
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `sections` | list[dict] or null | `null` | Section specs for single-output mode |
+| `sources` | dict[str, dict] or null | `null` | Source specs for multi-output mode (DPO/GRPO) |
+
+When `sources` is set, `sections` is ignored.
+
+### `mask`
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `mask` | dict | `{}` | `{role: "train" \| "mask"}` |
+| `mask_default` | str | `"mask"` | Default action for unlisted roles |
+
+### `preprocessing`
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `max_seq_len` | int | `2048` | Truncate sequences to this length |
+| `min_chars` | int | `50` | Skip text-mode items shorter than this |
+| `max_chars` | int | `2000000` | Skip text-mode items longer than this |
+| `max_items` | int or null | `null` | Stop after N documents |
+| `packing_strategy` | str | `"simple"` | Packing strategy: `"simple"`, `"bfd"`, `"bfd_split"` |
+| `max_packed_len` | int | `8192` | Maximum length of a packed bin |
+| `truncation_mode` | str | `"keep_start"` | How to truncate sequences: `"keep_start"` or `"keep_end"` |
+
+### `output`
+
+| Field | Type | Default | Description |
+|-------|------|---------|-------------|
+| `domain_key` | str or null | `null` | JSONL key for domain grouping |
+| `storage_format` | str | `"bin"` | `"bin"` (mmap) or `"h5"` |
+| `max_tokens_per_shard` | int | `100000000` | Flush threshold in cumulative tokens |
+| `dtype` | dict[str, str] | `{}` | Per-key tensor dtype override (e.g. `{"loss_mask": "bool"}`) |
+| `position_ids_mode` | str | `"doc_reset"` | How to compute position_ids: `"none"`, `"doc_reset"`, `"continuous"` |
+
+---
+
+## Mask Algorithm
+
+### Template mode (`template: true`)
+
+1. Prepend BOS token (masked)
+2. For each message in the field's array:
+   1. Render through `chat_template` for that single message
+   2. Encode rendered text
+   3. Apply mask rule for the message's role
+
+### Non-template mode
+
+Encode the field value as text. Mask value is 1 (train) or 0 (mask) per the section's `action`.
+
+### Text config detection
+
+When no section uses `template` and all sections have `action: "train"`, the builder omits `loss_mask` from the output — all tokens are trained.
+
+---
+
+## Output Layout
+
+### Single-Shard (`bin`)
+
+```
+output/
+  __default__/
+    shard_0000/
+      meta.json
+      sequence.bin
+      loss_mask.bin
+  wiki/
+    shard_0000/
+      meta.json
+      sequence.bin
+      loss_mask.bin
+```
+
+### Multi-Shard (`bin`)
+
+When `max_tokens_per_shard` is exceeded:
+
+```
+output/
+  __default__/
+    shard_0000/
+      meta.json
+      sequence.bin
+      loss_mask.bin
+    shard_0001/
+      meta.json
+      sequence.bin
+      loss_mask.bin
+```
+
+For `bin` format, `MmapStore` discovers all shards under the domain directory via `rglob("meta.json")`. For `h5` format, `H5Store` discovers `.h5`/`.hdf5` files via recursive glob.
+
+---
+
+## CLI
+
+```bash
+# SFT
+python scripts/tools/preprocess.py data/sft/*.jsonl -o output/sft/ -c configs/sft_chat.json
+
+# DPO
+python scripts/tools/preprocess.py data/dpo/*.jsonl -o output/dpo/ -c configs/dpo.json --tokenizer_path params
+
+# GRPO
+python scripts/tools/preprocess.py data/grpo/*.jsonl -o output/grpo/ -c configs/grpo.json
+```
+
+---
+
+## Python API
+
+```python
+from astrai.preprocessing.pipeline import Pipeline
+from astrai.config.preprocess_config import PipelineConfig
+
+config = PipelineConfig.from_file("sft.json")
+Pipeline(
+    config,
+    ["data_part1.jsonl", "data_part2.jsonl"],
+    output_dir="output/",
+    tokenizer_path="params",
+).run()
+```
+
+> Document Update Time: 2026-06-03

assets/docs/training.md

@@ -1,37 +1,17 @@
 # Training
 
-## Model Architecture
+## Contents
 
-The model uses a decoder-only Transformer with **GQA** (Grouped Query Attention) and optional **MLA** (Multi-head Latent Attention). 1.0 billion parameters, Chinese–English bilingual.
+- [Autoregression](#autoregression)
-
+- [Causal Mask](#causal-mask)
-```mermaid
+- [Rotary Position Embedding (RoPE)](#rotary-position-embedding-rope)
-flowchart TB
+- [Training Loop](#training-loop)
-    subgraph Layers["Transformer Layers"]
+- [Strategies](#strategies) — SEQ, SFT, DPO, GRPO
-        direction TB
+- [LR Schedulers](#lr-schedulers)
-        A[Input Embedding] --> B[Transformer Block\nLayer 1]
+- [Gradient Checkpointing](#gradient-checkpointing)
-        B --> C[Transformer Block\nLayer ...]
+- [Checkpoint](#checkpoint)
-        C --> D[Transformer Block\nLayer ...]
+- [TrainContextBuilder](#traincontextbuilder-builder-pattern)
-        D --> E[RMSNorm]
+- [Training CLI](#training-cli)
-        E --> F[Linear]
-        F --> G[SoftMax]
-    end
-
-    subgraph TransformerBlock["Transformer Block"]
-        direction TB
-        H[x] --> I[RMSNorm]
-        I --> J[Linear → Q/K/V]
-        J --> K[Q]; J --> L[K]; J --> M[V]
-        K --> N[RoPE]; L --> O[RoPE]
-        N --> P["Q @ K^T / sqrt(d)"]; O --> P
-        P --> Q[Masked SoftMax]; Q --> R[S @ V]; M --> R
-        R --> S[Linear]; S --> T[+]; H --> T
-        T --> U[RMSNorm]
-        U --> V["Linear (gate)"]; U --> W["Linear (up)"]
-        V --> X[SiLU]; X --> Y[×]; W --> Y
-        Y --> Z["Linear (down)"]; Z --> AA[+]; T --> AA
-        AA --> BB[x']
-    end
-```
 
 ### Autoregression
 
@@ -69,19 +49,25 @@ Two-level loop: **epoch** → **batch**. Optimizer step fires every `grad_accum_
 
 ```
 on_train_begin
+  model.train()
   on_epoch_begin
     for batch in dataloader:
       on_batch_begin
-      loss = strategy(batch)
+      with executor.accumulate(model):
-      (loss / grad_accum_steps).backward()
+        loss = strategy.compute_loss(batch)
-      iteration += 1
+        context.loss = loss.item()
+        stand_loss = loss / executor.grad_accum_steps
+        executor.backward(stand_loss)
+        context.consumed_samples += (
+            context.config.batch_per_device * context.world_size
+        )
         on_batch_end
 
-      if iteration % grad_accum_steps == 0:
+        if executor.sync_gradients:
-        on_step_begin
+          on_optimizer_step
           optimizer.step()
           optimizer.zero_grad()
-        on_step_end
+          if scheduler:
             scheduler.step()
     on_epoch_end
 on_train_end
@@ -92,12 +78,15 @@ on_train_end
 | Hook | Fires | Default callback |
 |------|-------|-----------------|
 | `on_train_begin` | Before training starts | `GradientCheckpointingCallback` |
-| `on_step_begin` | Every accumulation window | `GradientClippingCallback` |
+| `on_epoch_begin` | Start of each epoch | `ProgressBarCallback` |
+| `on_batch_begin` | Every batch | — |
+| `on_optimizer_step` | Every accumulation window | `GradientClippingCallback`, `MetricLoggerCallback`, `ValidationCallback` |
 | `on_batch_end` | Every batch | `CheckpointCallback`, `MetricLoggerCallback`, `ProgressBarCallback` |
-| `on_step_end` | Every accumulation window | `ValidationCallback` |
+| `on_epoch_end` | End of each epoch | `ProgressBarCallback` |
-| `on_train_end` | Training ends | `CheckpointCallback`, `MetricLoggerCallback` (final save) |
+| `on_error` | On exception during training | `CheckpointCallback`, `MetricLoggerCallback` |
+| `on_train_end` | Training ends (always via finally) | `CheckpointCallback`, `MetricLoggerCallback`, `GradientCheckpointingCallback` |
 
-Default callbacks: `gradient_checkpointing` (activation checkpointing, optional), `progress_bar` (tqdm), `checkpoint` (safetensors, rank-0), `metric_logger` (JSONL, rank-0), `gradient_clipping`, `validation` (periodic validation on val_dataset).
+Default callbacks (in order): `gradient_checkpointing` (activation checkpointing, optional), `checkpoint` (safetensors, rank-0), `validation` (periodic validation on val_dataset), `metric_logger` (JSONL, rank-0), `progress_bar` (tqdm), `gradient_clipping`.
 
 ## Strategies
 
@@ -109,7 +98,7 @@ $$
 L_{\text{PT}} = -\sum_{t=1}^{T} \log P(x_t \mid x_{\lt t}; \theta)
 $$
 
-Keys: `input_ids`, `target_ids`
+Keys: `input_ids`, `target_ids`. Optional: `label_smoothing`.
 
 ### SFT (Supervised Fine-Tuning)
 
@@ -119,7 +108,7 @@ $$
 L_{\text{SFT}} = -\sum_{t=P+1}^{P+L} \log P(s_t \mid s_{\lt t}; \theta)
 $$
 
-Keys: `input_ids`, `target_ids`, `loss_mask`
+Keys: `input_ids`, `target_ids`, `loss_mask`. Optional: `label_smoothing`.
 
 ### DPO (Direct Preference Optimization)
 
@@ -129,7 +118,7 @@ $$
 L_{\text{DPO}} = -\mathbb{E}\left[\log\sigma\left(\beta\log\frac{\pi_\theta(y_w\mid x)}{\pi_{\text{ref}}(y_w\mid x)} - \beta\log\frac{\pi_\theta(y_l\mid x)}{\pi_{\text{ref}}(y_l\mid x)}\right)\right]
 $$
 
-Parameters: `beta=0.1`. Keys: `chosen`, `rejected`, `chosen_mask`, `rejected_mask`.
+Parameters: `beta=0.1`, `reduction="mean"`. Keys: `chosen`, `rejected`, `chosen_mask`, `rejected_mask`.
 
 ### GRPO (Group Relative Policy Optimization)
 
@@ -143,7 +132,7 @@ $$
 L_{\text{GRPO}} = -\mathbb{E}\left[\min\left(\frac{\pi_\theta}{\pi_{\text{ref}}}A,\; \text{clip}\left(\frac{\pi_\theta}{\pi_{\text{ref}}}, 1-\epsilon, 1+\epsilon\right)A\right)\right] + \lambda \cdot \mathbb{E}\left[(\log\pi_\theta - \log\pi_{\text{ref}})^2\right]
 $$
 
-Parameters: `group_size=4`, `clip_eps=0.2`, `kl_coef=0.01`, `sync_interval=200`.
+Parameters: `group_size=4`, `clip_eps=0.2`, `kl_coef=0.01`, `sync_interval=200`, `reduction="mean"`.
 
 Keys: `prompts`, `responses`, `masks`, `rewards`.
 
@@ -153,8 +142,9 @@ Keys: `prompts`, `responses`, `masks`, `rewards`.
 |------|-------|-------------|
 | Cosine | `CosineScheduler` | Linear warmup → cosine decay to `min_rate` |
 | SGDR | `SGDRScheduler` | Cosine annealing with warm restarts (`t_mult=2`) |
+| WSD | `WSDScheduler` | Warmup-Stable-Decay with sqrt cooldown |
 
-Created by `SchedulerFactory.create(optimizer, schedule_type, **kwargs)`.
+Created by `SchedulerFactory.create(schedule_type, optimizer, **kwargs)`. Valid types: `"cosine"`, `"sgdr"`, `"wsd"`. Omit to use no scheduler.
 
 ## Gradient Checkpointing
 
@@ -170,29 +160,30 @@ Callback wraps each `DecoderBlock.forward` with `torch.utils.checkpoint.checkpoi
 ## Checkpoint
 
 ```
-Checkpoint(state_dict, epoch, iteration, extra, meta)
+Checkpoint(state_dict, epoch, consumed_samples, extra, meta, config)
-  ├── save(save_dir)    rank-0 only: meta.json (includes training config) + state_dict.safetensors + optional extra.pt
+  ├── save(save_dir)    rank-0 only: meta.json (epoch/consumed_samples/timestamp) + config.json (model config) + model.safetensors + optional {key}.pt (optimizer.pt, scheduler.pt)
-  └── load(save_dir)    broadcasts metadata from rank-0
+  └── load(save_dir, broadcast=False)    loads from local disk; set broadcast=True to broadcast metadata from rank-0
 ```
 
 Optimizer/scheduler state persisted by default via `Checkpoint.extra`.  
-Training config (`TrainConfig.to_dict()`) saved into `meta.json` during training via `CheckpointCallback`.
+Model config (`context.model_config`) saved into `config.json` during training via `CheckpointCallback`.
 
 ## TrainContextBuilder (Builder Pattern)
 
 ```python
 context = (
     TrainContextBuilder(config)
-        .with_checkpoint(checkpoint)
+        .with_resume_dir(resume_dir)
         .build()
 )
 # Returns TrainContext with model, strategy, optimizer, scheduler, dataloader, checkpoint
 ```
 
 - Loads checkpoint weights if provided
-- Wraps model with `parallel_wrapper` if `nprocs > 1`
+- Creates executor via `ExecutorFactory.create(cfg.parallel_mode, grad_accum_steps=cfg.grad_accum_steps, **cfg.executor_kwargs)`
+- Calls `executor.prepare(model, optimizer, dataloader, scheduler)` for model distribution (e.g. DDP) + gradient accumulation wrappers
 - Creates `ResumableDistributedSampler` for shuffle+resume
-- Builds strategy via `StrategyFactory.create(train_type, ...)`
+- Builds strategy via `StrategyFactory.create(train_type, model, device, **kwargs)`
 
 ## Training CLI
 
@@ -201,6 +192,7 @@ export CUDA_VISIBLE_DEVICES=0,1,2,3
 
 nohup python scripts/tools/train.py \
     --nprocs=4 \
+    --parallel_mode=ddp \
     --train_type=seq \
     --data_root_path=/path/to/dataset \
     --param_path=/path/to/model \
@@ -222,4 +214,4 @@ nohup python scripts/tools/train.py \
 
 Full parameter reference at [params.md](params.md).
 
-> Document Update Time: 2026-05-17
+> Document Update Time: 2026-05-30

astrai/__init__.py

@@ -1,34 +1,98 @@
-__version__ = "1.3.5"
+__version__ = "1.3.8"
 __author__ = "ViperEkura"
 
 from astrai.config import (
     AutoRegressiveLMConfig,
+    BaseModelConfig,
+    ConfigFactory,
     EncoderConfig,
+    PipelineConfig,
     TrainConfig,
 )
-from astrai.dataset import DatasetFactory
+from astrai.dataset import (
+    BaseDataset,
+    DatasetFactory,
+    ResumableDistributedSampler,
+    Store,
+    StoreFactory,
+)
 from astrai.factory import BaseFactory
 from astrai.inference import (
     GenerationRequest,
     InferenceEngine,
+    ProtocolHandler,
+    SamplingPipeline,
+    get_app,
+    run_server,
+    sample,
+)
+from astrai.model import (
+    AutoModel,
+    AutoRegressiveLM,
+    EmbeddingEncoder,
+    LoRAConfig,
+    inject_lora,
+)
+from astrai.parallel import (
+    ExecutorFactory,
+    get_rank,
+    get_world_size,
+    only_on_rank,
+    spawn_parallel_fn,
+)
+from astrai.preprocessing import Pipeline, filter_by_length
+from astrai.serialization import Checkpoint
+from astrai.tokenize import AutoTokenizer, ChatTemplate
+from astrai.trainer import (
+    BaseScheduler,
+    BaseStrategy,
+    CallbackFactory,
+    SchedulerFactory,
+    StrategyFactory,
+    TrainCallback,
+    Trainer,
 )
-from astrai.model import AutoModel, AutoRegressiveLM
-from astrai.tokenize import AutoTokenizer
-from astrai.trainer import CallbackFactory, SchedulerFactory, StrategyFactory, Trainer
 
 __all__ = [
     "AutoRegressiveLM",
     "AutoRegressiveLMConfig",
-    "EncoderConfig",
+    "AutoModel",
-    "TrainConfig",
-    "DatasetFactory",
     "AutoTokenizer",
+    "BaseDataset",
+    "BaseFactory",
+    "BaseModelConfig",
+    "BaseScheduler",
+    "BaseStrategy",
+    "CallbackFactory",
+    "ChatTemplate",
+    "Checkpoint",
+    "ConfigFactory",
+    "DatasetFactory",
+    "EmbeddingEncoder",
+    "EncoderConfig",
+    "ExecutorFactory",
     "GenerationRequest",
     "InferenceEngine",
-    "Trainer",
+    "LoRAConfig",
-    "CallbackFactory",
+    "Pipeline",
-    "StrategyFactory",
+    "PipelineConfig",
+    "ProtocolHandler",
+    "ResumableDistributedSampler",
+    "SamplingPipeline",
     "SchedulerFactory",
-    "BaseFactory",
+    "Store",
-    "AutoModel",
+    "StoreFactory",
+    "StrategyFactory",
+    "TrainCallback",
+    "TrainConfig",
+    "Trainer",
+    "filter_by_length",
+    "get_app",
+    "get_rank",
+    "get_world_size",
+    "inject_lora",
+    "only_on_rank",
+    "run_server",
+    "sample",
+    "spawn_parallel_fn",
 ]

astrai/config/__init__.py

@@ -4,14 +4,22 @@ from astrai.config.model_config import (
     ConfigFactory,
     EncoderConfig,
 )
+from astrai.config.preprocess_config import (
+    InputConfig,
+    OutputConfig,
+    PipelineConfig,
+    ProcessingConfig,
+)
 from astrai.config.train_config import TrainConfig
 
 __all__ = [
-    # Model configuration
     "BaseModelConfig",
     "AutoRegressiveLMConfig",
     "EncoderConfig",
-    "ModelConfig",
     "ConfigFactory",
     "TrainConfig",
+    "InputConfig",
+    "OutputConfig",
+    "PipelineConfig",
+    "ProcessingConfig",
 ]

astrai/config/base.py

@@ -1,6 +1,7 @@
 import json
 from dataclasses import MISSING, dataclass, fields
-from typing import Any, Dict, Optional, Self, get_type_hints
+from pathlib import Path
+from typing import Any, Dict, Optional, Self, Union, get_type_hints
 
 
 @dataclass
@@ -13,12 +14,21 @@ class BaseConfig:
                 d[fld.name] = v
             elif v is None:
                 d[fld.name] = None
-            elif isinstance(v, dict):
+            elif isinstance(v, (dict, list, tuple)):
                 try:
-                    json.dumps(v)
+                    val = list(v) if isinstance(v, tuple) else v
-                    d[fld.name] = v
+                    json.dumps(val)
+                    d[fld.name] = val
                 except (TypeError, ValueError):
                     pass
+            elif isinstance(v, BaseConfig):
+                d[fld.name] = v.to_dict()
+            elif hasattr(v, "__dataclass_fields__"):
+                sub = {}
+                for f in fields(v):
+                    a = getattr(v, f.name)
+                    sub[f.name] = list(a) if isinstance(a, tuple) else a
+                d[fld.name] = sub
         return d
 
     @classmethod
@@ -74,4 +84,15 @@ class BaseConfig:
             return value
         if isinstance(value, target_type):
             return value
+        if isinstance(value, dict) and issubclass(target_type, BaseConfig):
+            return target_type.from_dict(value)
         raise TypeError
+
+    @classmethod
+    def from_file(cls, path: Union[str, Path]) -> Self:
+        with open(path, "r", encoding="utf-8") as f:
+            return cls.from_dict(json.load(f))
+
+    def to_file(self, path: Union[str, Path]):
+        with open(path, "w", encoding="utf-8") as f:
+            json.dump(self.to_dict(), f, indent=2, ensure_ascii=False)

astrai/config/model_config.py

@@ -1,6 +1,5 @@
-import json
 from dataclasses import dataclass
-from typing import Any, Dict, Optional, Self
+from typing import Any, Dict, Optional
 
 from astrai.config.base import BaseConfig
 from astrai.factory import BaseFactory
@@ -21,18 +20,7 @@ class BaseModelConfig(BaseConfig):
     """Base config with ``model_type`` dispatch and file I/O."""
 
     model_type: Optional[str] = None
-
+    neftune_alpha: float = 0.0
-    @classmethod
-    def from_file(cls, config_path: str) -> Self:
-        with open(config_path, "r") as f:
-            raw: Dict[str, Any] = json.load(f)
-        return cls.from_dict(raw)
-
-    def to_file(self, config_path: str):
-        d = self.to_dict()
-        config_dict = {k: v for k, v in d.items() if v is not None}
-        with open(config_path, "w") as f:
-            json.dump(config_dict, f, indent=4)
 
 
 @dataclass
@@ -49,6 +37,7 @@ class AutoRegressiveLMConfig(BaseModelConfig):
 
     max_len: Optional[int] = None
     rope_theta: Optional[float] = None
+    rope_scaling: Optional[dict] = None
 
     attn_type: str = "gqa"
     n_heads: Optional[int] = None
@@ -80,11 +69,14 @@ class EncoderConfig(BaseModelConfig):
 
     max_len: Optional[int] = None
     rope_theta: Optional[float] = None
+    rope_scaling: Optional[dict] = None
 
+    attn_type: str = "gqa"
     n_heads: Optional[int] = None
     n_kv_heads: Optional[int] = None
     use_qk_norm: Optional[bool] = None
     use_gated_attention: Optional[bool] = None
 
+    ffn_type: str = "mlp"
     pooling_type: Optional[str] = None
     normalize_embeddings: Optional[bool] = None

astrai/config/preprocess_config.py

@@ -0,0 +1,109 @@
+"""Pipeline configuration for JSONL preprocessing.
+
+Supports single-sequence (SFT/pretrain) and multi-output (DPO/GRPO)
+modes, both driven declaratively through ``input.sections`` or
+``input.sources``.
+"""
+
+from dataclasses import dataclass, field
+from typing import Dict, List, Optional
+
+from astrai.config.base import BaseConfig
+
+
+@dataclass
+class InputConfig(BaseConfig):
+    """Declarative input mapping.
+
+    Single-output mode (backward-compatible)::
+
+        {"input": {"sections": [{"field": "messages", ...}]}}
+
+    Multi-output mode (DPO / GRPO)::
+
+        {"input": {"sources": {
+            "chosen": {"sections": [{"field": "chosen", ...}]},
+            "rejected": {"sections": [{"field": "rejected", ...}]},
+        }}}
+    """
+
+    sections: Optional[List[Dict]] = None
+    sources: Optional[Dict[str, Dict]] = None
+
+
+@dataclass
+class ProcessingConfig(BaseConfig):
+    """Processing configuration.
+
+    Parameters
+    ----------
+    max_seq_len : int
+        Maximum sequence length (default: 2048).
+    min_chars : int
+        Minimum number of characters to keep (default: 50).
+    max_chars : int
+        Maximum number of characters to keep (default: 2_000_000).
+    max_items : Optional[int]
+        Maximum number of items to process (default: None, unlimited).
+    packing_strategy : str
+        How to pack sequences into a contiguous stream.
+
+        - ``"simple"``: sequential concatenation (default, backward compatible).
+        - ``"bfd"``: best-fit decreasing bin packing, minimises wasted tokens.
+        - ``"bfd_split"``: BFD with over-length sequences split into chunks.
+    max_packed_len : int
+        Maximum length of a packed bin. Sequences longer than this are
+        truncated or split depending on ``packing_strategy`` (default: 8192).
+    truncation_mode : str
+        How to truncate sequences longer than ``max_packed_len``.
+
+        - ``"keep_start"``: keep the first ``max_packed_len`` tokens (default).
+        - ``"keep_end"``: keep the last ``max_packed_len`` tokens.
+    """
+
+    max_seq_len: int = 2048
+    min_chars: int = 50
+    max_chars: int = 2_000_000
+    max_items: Optional[int] = None
+    packing_strategy: str = "simple"
+    max_packed_len: int = 8192
+    truncation_mode: str = "keep_start"
+
+
+@dataclass
+class OutputConfig(BaseConfig):
+    """Output configuration.
+
+    Parameters
+    ----------
+    domain_key : Optional[str]
+        Domain key for the output store (default: None).
+    storage_format : str
+        Storage format, one of ``"bin"``, ``"jsonl"`` (default: ``"bin"``).
+    max_tokens_per_shard : int
+        Maximum tokens per shard before splitting (default: 100_000_000).
+    dtype : Dict[str, str]
+        Per-key dtype overrides, e.g. ``{"input_ids": "int32"}`` (default: {}).
+    position_ids_mode : Optional[str]
+        How to compute position_ids in packed sequences.
+
+         - ``"none"``: do not generate (default).
+        - ``"doc_reset"``: reset to 0 at each document boundary.
+        - ``"continuous"``: sequential 0, 1, 2, ... (pretrain, single doc).
+    """
+
+    domain_key: Optional[str] = None
+    storage_format: str = "bin"
+    max_tokens_per_shard: int = 100_000_000
+    dtype: Dict[str, str] = field(default_factory=dict)
+    position_ids_mode: str = "doc_reset"
+
+
+@dataclass
+class PipelineConfig(BaseConfig):
+    version: int = 1
+    input: InputConfig = field(default_factory=InputConfig)
+    mask: Dict[str, str] = field(default_factory=dict)
+    mask_default: str = "mask"
+    preprocessing: ProcessingConfig = field(default_factory=ProcessingConfig)
+    output: OutputConfig = field(default_factory=OutputConfig)

astrai/config/train_config.py

@@ -1,5 +1,5 @@
 from dataclasses import dataclass, field, fields
-from typing import Callable, Optional
+from typing import Any, Callable, Dict, List, Optional
 
 import torch.nn as nn
 from torch.optim import Optimizer
@@ -7,6 +7,7 @@ from torch.optim.lr_scheduler import LRScheduler
 from torch.utils.data import Dataset
 
 from astrai.config.base import BaseConfig
+from astrai.model.components.lora import LoRAConfig
 
 
 def required(**kw):
@@ -16,8 +17,8 @@ def required(**kw):
 @dataclass
 class TrainConfig(BaseConfig):
     # basic setting
-    model: nn.Module = field(
+    model_fn: Callable[[], nn.Module] = field(
-        default=None, metadata=required(help="Model for training.")
+        default=None, metadata=required(help="Model factory for training.")
     )
     strategy: str = field(default=None, metadata=required(help="Training strategy."))
     dataset: Dataset = field(
@@ -39,21 +40,40 @@ class TrainConfig(BaseConfig):
     max_grad_norm: float = field(
         default=1.0, metadata={"help": "Maximum gradient norm."}
     )
-    gradient_checkpointing_modules: list = field(
+    gradient_checkpointing_modules: List[str] = field(
         default_factory=list,
         metadata={"help": "Module types to enable activation checkpointing for."},
     )
 
     # checkpoint setting
     start_epoch: int = field(default=0, metadata={"help": "Start epoch for training."})
-    start_batch: int = field(
+    start_samples: int = field(
-        default=0, metadata={"help": "Start batch iteration for training."}
+        default=0,
+        metadata={
+            "help": "Start samples count (per rank). Superseded by checkpoint consumed_samples."
+        },
     )
     ckpt_dir: str = field(
         default="./checkpoint", metadata={"help": "Checkpoint directory."}
     )
     ckpt_interval: int = field(
-        default=5000, metadata={"help": "Number of iterations between checkpoints."}
+        default=5000,
+        metadata={"help": "Number of optimizer steps between checkpoints."},
+    )
+
+    # lora setting
+    lora: Optional[LoRAConfig] = field(
+        default=None,
+        metadata={"help": "LoRA config. None means full fine-tuning."},
+    )
+
+    # metric setting
+    log_dir: str = field(
+        default="./checkpoint/logs", metadata={"help": "Directory for metric logs."}
+    )
+    metrics: List[str] = field(
+        default_factory=lambda: ["loss", "lr", "grad_norm"],
+        metadata={"help": "Metrics to record during training."},
     )
 
     # dataloader setting
@@ -82,11 +102,9 @@ class TrainConfig(BaseConfig):
     master_port: str = field(
         default="29500", metadata={"help": "Master port for distributed training."}
     )
-    parallel_wrapper: Optional[Callable] = field(
+    parallel_mode: str = field(
-        default=None, metadata={"help": "Parallel function for training."}
+        default="none",
-    )
+        metadata={"help": "Parallel strategy: none, ddp, fsdp."},
-    state_dict_fn: Optional[Callable] = field(
-        default=None, metadata={"help": "Parallel function for state  dict saving."}
     )
     start_method: str = field(
         default="spawn",
@@ -100,12 +118,26 @@ class TrainConfig(BaseConfig):
     val_dataset: Optional[Dataset] = field(
         default=None, metadata={"help": "Dataset for validation."}
     )
+    val_split: Optional[float] = field(
+        default=None,
+        metadata={
+            "help": "Ratio to split from training dataset for validation (e.g. 0.05). Ignored if val_dataset is set."
+        },
+    )
     val_step: int = field(
         default=1000,
         metadata={"help": "Number of optimizer steps between validation runs."},
     )
+    neftune_alpha: float = field(
+        default=0.0,
+        metadata={"help": "NEFTune noise alpha (0=disabled, typical: 5.0)."},
+    )
 
-    extra_kwargs: dict = field(
+    executor_kwargs: Dict[str, Any] = field(
+        default_factory=dict,
+        metadata={"help": "Extra kwargs passed to ExecutorFactory.create()."},
+    )
+    extra_kwargs: Dict[str, Any] = field(
         default_factory=dict, metadata={"help": "Other arguments."}
     )
 

astrai/dataset/__init__.py

@@ -4,32 +4,32 @@ from astrai.dataset.dataset import (
 )
 from astrai.dataset.sampler import ResumableDistributedSampler
 from astrai.dataset.storage import (
-    BaseSegmentFetcher,
+    H5Store,
-    BaseStorage,
+    JsonlStore,
-    H5Storage,
+    MmapStore,
-    JSONStorage,
+    Store,
-    MultiSegmentFetcher,
+    StoreFactory,
-    StorageFactory,
     detect_format,
+)
+from astrai.serialization import (
+    load_bin,
     load_h5,
-    load_json,
+    save_bin,
     save_h5,
-    save_json,
 )
 
 __all__ = [
     "BaseDataset",
     "DatasetFactory",
-    "BaseSegmentFetcher",
+    "Store",
-    "MultiSegmentFetcher",
+    "StoreFactory",
-    "BaseStorage",
+    "H5Store",
-    "H5Storage",
+    "MmapStore",
-    "JSONStorage",
+    "JsonlStore",
-    "StorageFactory",
     "detect_format",
     "save_h5",
     "load_h5",
-    "save_json",
+    "save_bin",
-    "load_json",
+    "load_bin",
     "ResumableDistributedSampler",
 ]

astrai/dataset/dataset.py

@@ -8,8 +8,8 @@ from torch import Tensor
 from torch.utils.data import Dataset
 
 from astrai.dataset.storage import (
-    BaseStorage,
+    Store,
-    StorageFactory,
+    StoreFactory,
     detect_format,
 )
 from astrai.factory import BaseFactory
@@ -26,7 +26,7 @@ class BaseDataset(Dataset, ABC):
         super().__init__()
         self.window_size = window_size
         self.stride = stride
-        self.storage: Optional[BaseStorage] = None
+        self.storage: Optional[Store] = None
 
     @property
     def required_keys(self) -> List[str]:
@@ -48,37 +48,28 @@ class BaseDataset(Dataset, ABC):
                 f"Missing: {missing}"
             )
 
-    def load(self, load_path: str, storage_type: Optional[str] = None, tokenizer=None):
+    def load(self, load_path: str, storage_type: Optional[str] = None, **kwargs):
         """Load dataset from the given path.
 
         Auto-detects the storage format if not specified.
 
         Args:
             load_path: Path to the data directory or file
-            storage_type: Force a specific storage type ("h5", "json"),
+            storage_type: Force a specific storage type ("h5", "bin", "jsonl"),
                           or None for auto-detection
-            tokenizer: Callable str -> List[int], used to tokenize raw text
+            **kwargs: Extra arguments forwarded to the store constructor and
-                       in JSON files. Ignored for HDF5.
+                      to ``store.load()``.
 
         Raises:
             KeyError: If the loaded storage is missing required keys.
         """
         if storage_type is None:
             storage_type = detect_format(load_path)
-        self.storage = StorageFactory.create(storage_type)
+        self.storage = StoreFactory.create(storage_type, **kwargs)
         self._load_path = load_path
-        self.storage.load(load_path, tokenizer=tokenizer)
+        self.storage.load(load_path, **kwargs)
         self._validate_keys()
 
-    def load_json(self, load_path: str, tokenizer=None):
-        """Load dataset from JSON files explicitly.
-
-        Args:
-            load_path: Path to the JSON data file or directory
-            tokenizer: Optional tokenizer callable for raw text JSON.
-        """
-        self.load(load_path, storage_type="json", tokenizer=tokenizer)
-
     @property
     def count(self) -> int:
         """Return the total number of raw elements (tokens) in the dataset."""
@@ -147,26 +138,6 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
         dataset = DatasetFactory.create("custom", window_size, stride)
     """
 
-    @classmethod
-    def _validate_component(cls, dataset_cls: type) -> None:
-        """Validate that the dataset class inherits from BaseDataset."""
-        if not issubclass(dataset_cls, BaseDataset):
-            raise TypeError(f"{dataset_cls.__name__} must inherit from BaseDataset")
-
-    @classmethod
-    def create(cls, train_type: str, window_size: int, stride: int) -> "BaseDataset":
-        """Create a dataset instance.
-
-        Args:
-            train_type: Type of training ("seq", "sft", "dpo", "grpo")
-            window_size: Window size for data sampling
-            stride: Stride between consecutive samples
-
-        Returns:
-            Dataset instance
-        """
-        return super().create(train_type, window_size, stride)
-
     @classmethod
     def load(
         cls,
@@ -175,7 +146,7 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
         window_size: int,
         stride: Optional[int] = None,
         storage_type: Optional[str] = None,
-        tokenizer=None,
+        **kwargs,
     ) -> "BaseDataset":
         """Create and load a dataset in one step.
 
@@ -184,8 +155,8 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
             load_path: Path to the data file
             window_size: Window size for data sampling
             stride: Stride between consecutive samples (default: same as window_size)
-            storage_type: Storage type ("h5", "json") or None for auto-detection
+            storage_type: Storage type ("h5", "bin", "jsonl") or None for auto-detection
-            tokenizer: Callable str -> List[int] for raw text JSON tokenization
+            **kwargs: Extra arguments forwarded to ``dataset.load()``.
 
         Returns:
             Loaded dataset instance
@@ -194,23 +165,15 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
             stride = window_size
 
         dataset = cls.create(train_type, window_size, stride)
-        dataset.load(load_path, storage_type=storage_type, tokenizer=tokenizer)
+        dataset.load(load_path, storage_type=storage_type, **kwargs)
 
         return dataset
 
-    @classmethod
-    def available_types(cls) -> list:
-        """Return list of registered dataset type names."""
-        return cls.list_registered()
-
 
 @DatasetFactory.register("seq")
 class SEQDataset(BaseDataset):
     """Dataset for sequential next-token prediction training."""
 
-    def __init__(self, window_size: int, stride: int):
-        super().__init__(window_size, stride)
-
     @property
     def required_keys(self) -> List[str]:
         return ["sequence"]
@@ -231,12 +194,9 @@ class SEQDataset(BaseDataset):
 class SFTDataset(BaseDataset):
     """Dataset for supervised fine-tuning with loss masking."""
 
-    def __init__(self, window_size: int, stride: int):
-        super().__init__(window_size, stride)
-
     @property
     def required_keys(self) -> List[str]:
-        return ["sequence", "loss_mask"]
+        return ["sequence", "loss_mask", "position_ids"]
 
     def _fetch_data(self, begin_idx: int, end_idx: int, key: str) -> Tensor:
         return self.storage.fetch(begin_idx, end_idx, key)
@@ -244,24 +204,23 @@ class SFTDataset(BaseDataset):
     def __getitem__(self, index):
         begin_idx, end_idx = self.get_index(index)
 
-        x = self._fetch_data(begin_idx, end_idx, "sequence").to(dtype=torch.long)
+        x = self._fetch_data(begin_idx, end_idx, "sequence")
-        y = self._fetch_data(begin_idx + 1, end_idx + 1, "sequence").to(
+        y = self._fetch_data(begin_idx + 1, end_idx + 1, "sequence")
-            dtype=torch.long
+        position_ids = self._fetch_data(begin_idx, end_idx, "position_ids")
-        )
+        loss_mask = self._fetch_data(begin_idx + 1, end_idx + 1, "loss_mask")
-        loss_mask = self._fetch_data(begin_idx + 1, end_idx + 1, "loss_mask").to(
-            dtype=torch.bool
-        )
 
-        return {"input_ids": x, "target_ids": y, "loss_mask": loss_mask}
+        return {
+            "input_ids": x.to(dtype=torch.long),
+            "target_ids": y.to(dtype=torch.long),
+            "position_ids": position_ids.to(dtype=torch.long),
+            "loss_mask": loss_mask.to(dtype=torch.bool),
+        }
 
 
 @DatasetFactory.register("dpo")
 class DPODataset(BaseDataset):
     """Dataset for Direct Preference Optimization training."""
 
-    def __init__(self, window_size: int, stride: int):
-        super().__init__(window_size, stride)
-
     @property
     def required_keys(self) -> List[str]:
         return ["chosen", "rejected", "chosen_mask", "rejected_mask"]
@@ -293,9 +252,6 @@ class DPODataset(BaseDataset):
 class GRPODataset(BaseDataset):
     """Dataset for Group Relative Policy Optimization training."""
 
-    def __init__(self, window_size: int, stride: int):
-        super().__init__(window_size, stride)
-
     @property
     def required_keys(self) -> List[str]:
         return ["prompts", "responses", "masks", "rewards"]
@@ -306,9 +262,11 @@ class GRPODataset(BaseDataset):
     def __getitem__(self, index: int) -> Dict[str, Tensor]:
         begin_idx, end_idx = self.get_index(index)
 
-        prompts = self._fetch_data(begin_idx, end_idx, "prompts")
+        prompts = self._fetch_data(begin_idx, end_idx, "prompts").to(dtype=torch.long)
-        responses = self._fetch_data(begin_idx, end_idx, "responses")
+        responses = self._fetch_data(begin_idx, end_idx, "responses").to(
-        masks = self._fetch_data(begin_idx, end_idx, "masks")
+            dtype=torch.long
+        )
+        masks = self._fetch_data(begin_idx, end_idx, "masks").to(dtype=torch.bool)
         rewards = self._fetch_data(begin_idx, end_idx, "rewards")
 
         return {

astrai/dataset/sampler.py

@@ -43,6 +43,7 @@ class ResumableDistributedSampler(Sampler[int]):
         offset = 0 if drop_last else self.num_replicas - 1
         self.num_samples_per_replica = (self.num_samples + offset) // self.num_replicas
         self.total_size = self.num_samples_per_replica * self.num_replicas
+        self.iter = self.iter % self.num_samples_per_replica
 
         self._indices = None
 
@@ -73,6 +74,12 @@ class ResumableDistributedSampler(Sampler[int]):
 
         self.epoch += 1
         self._indices = None
+        self.iter = self.iter % self.num_samples_per_replica
+
+    @property
+    def _remaining(self):
+        remaining = self.num_samples_per_replica - self.iter
+        return max(remaining, 0)
 
     def __len__(self):
-        return self.num_samples_per_replica
+        return self._remaining

astrai/dataset/storage.py

@@ -1,107 +1,44 @@
 """Storage backends for different data formats.
 
-Each storage handles format-specific loading (HDF5, JSON, etc.) and provides
+Layers:
-a uniform interface for data access and length observation via fetchers.
+  - I/O layer:       save_* / load_* functions, read/write raw files (HDF5/bin)
+                      return Dict[str, List[Tensor]] — format-specific, no state
+  - Store (ABC):     central abstraction, normalizes multi-segment into
+                      Dict[str, List[Tensor]] per key via _normalize(),
+                      fetch() uses bisect across segments — no forced concat
+  - Dataset layer:   BaseDataset owns a Store, only calls store.fetch(begin, end, key)
+
+Key properties:
+  - Multi-segment:   segments kept as-is, no forced concatenation — safe for
+                      datasets larger than RAM
+  - Explicit length: _length = min(total elements across keys), set at load,
+                      __len__ returns O(1)
+  - Zero-copy mmap:  MmapStore wraps np.memmap(mode="r"), all DataLoader
+                       workers share OS page-cache pages
 """
 
 import bisect
+import glob
 import json
-import os
+import logging
 from abc import ABC, abstractmethod
 from pathlib import Path
-from typing import Callable, Dict, List, Optional, Union
+from typing import Dict, List, Union
 
-import h5py
 import torch
 from torch import Tensor
 
+from astrai.config.preprocess_config import PipelineConfig
 from astrai.factory import BaseFactory
+from astrai.preprocessing.builder import MaskBuilderFactory
+from astrai.preprocessing.position_id import PositionIdStrategyFactory
+from astrai.serialization import (
+    load_bin,
+    load_h5,
+)
+from astrai.tokenize import AutoTokenizer
 
-
+logger = logging.getLogger(__name__)
-def save_h5(file_path: str, file_name: str, tensor_group: Dict[str, List[Tensor]]):
-    os.makedirs(file_path, exist_ok=True)
-    full_file_path = os.path.join(file_path, f"{file_name}.h5")
-    with h5py.File(full_file_path, "w") as f:
-        for key, tensors in tensor_group.items():
-            grp = f.create_group(key)
-            for idx, tensor in enumerate(tensors):
-                arr = tensor.cpu().numpy()
-                grp.create_dataset(f"data_{idx}", data=arr)
-
-
-def load_h5(file_path: str, share_memory=True) -> Dict[str, List[Tensor]]:
-    tensor_group: Dict[str, List[Tensor]] = {}
-
-    root_path = Path(file_path)
-    h5_files = list(root_path.rglob("*.h5")) + list(root_path.rglob("*.hdf5"))
-
-    for h5_file in h5_files:
-        with h5py.File(h5_file, "r") as f:
-            for key in f.keys():
-                grp = f[key]
-                dsets = []
-                for dset_name in grp.keys():
-                    dset = grp[dset_name]
-                    tensor = torch.from_numpy(dset[:])
-                    if share_memory:
-                        tensor = tensor.share_memory_()
-                    dsets.append(tensor)
-
-                if tensor_group.get(key) is None:
-                    tensor_group[key] = []
-                tensor_group[key].extend(dsets)
-
-    return tensor_group
-
-
-def save_json(file_path: str, file_name: str, tensor_group: Dict[str, List[Tensor]]):
-    os.makedirs(file_path, exist_ok=True)
-    full_file_path = os.path.join(file_path, f"{file_name}.json")
-    json_data = {}
-    for key, tensors in tensor_group.items():
-        json_data[key] = [tensor.tolist() for tensor in tensors]
-    with open(full_file_path, "w", encoding="utf-8") as f:
-        json.dump(json_data, f, ensure_ascii=False)
-
-
-def load_json(
-    file_path: str,
-    share_memory: bool = True,
-    tokenizer: Optional[Callable[[str], List[int]]] = None,
-) -> Dict[str, List[Tensor]]:
-    """Load tensor data from JSON files.
-
-    Supports two modes:
-    - Pre-tokenized: JSON values are List[List[int]] (token IDs), loaded as-is.
-    - Raw text: JSON values are List[str], tokenized via ``tokenizer`` callable
-      at load time. A ``tokenizer`` receives a str and returns List[int].
-
-    Non-data JSON files (e.g. config.json) with scalar/object values are
-    silently skipped.
-    """
-    tensor_group: Dict[str, List[Tensor]] = {}
-    root_path = Path(file_path)
-    json_files = list(root_path.rglob("*.json")) + list(root_path.rglob("*.jsonl"))
-    for json_file in json_files:
-        with open(json_file, "r", encoding="utf-8") as f:
-            data = json.load(f)
-        if not isinstance(data, dict):
-            continue
-        for key, sequences in data.items():
-            if not isinstance(sequences, list):
-                continue
-            tensors = []
-            for seq in sequences:
-                if tokenizer is not None and isinstance(seq, str):
-                    seq = tokenizer(seq)
-                tensor = torch.tensor(seq, dtype=torch.long)
-                if share_memory:
-                    tensor = tensor.share_memory_()
-                tensors.append(tensor)
-            if tensor_group.get(key) is None:
-                tensor_group[key] = []
-            tensor_group[key].extend(tensors)
-    return tensor_group
 
 
 def detect_format(load_path: str) -> str:
@@ -111,7 +48,7 @@ def detect_format(load_path: str) -> str:
         load_path: Directory or file path
 
     Returns:
-        Format string ("h5" or "json")
+        Format string ("h5", "bin", or "jsonl")
 
     Raises:
         FileNotFoundError: If no supported data files are found
@@ -121,181 +58,255 @@ def detect_format(load_path: str) -> str:
         suffix = root.suffix.lower()
         if suffix in (".h5", ".hdf5"):
             return "h5"
-        if suffix in (".json", ".jsonl"):
+        if suffix == ".jsonl":
-            return "json"
+            return "jsonl"
         raise ValueError(f"Unsupported file format: {suffix}")
 
-    h5_files = list(root.rglob("*.h5")) + list(root.rglob("*.hdf5"))
+    h5_files = [
+        Path(p)
+        for pattern in ("*.h5", "*.hdf5")
+        for p in glob.glob(str(root / "**" / pattern), recursive=True)
+    ]
     if h5_files:
         return "h5"
-    json_files = list(root.rglob("*.json")) + list(root.rglob("*.jsonl"))
+    bin_files = [Path(p) for p in glob.glob(str(root / "**" / "*.bin"), recursive=True)]
-    if json_files:
+    if bin_files:
-        return "json"
+        has_meta = (root / "meta.json").exists() or len(
+            [Path(p) for p in glob.glob(str(root / "**" / "meta.json"), recursive=True)]
+        ) > 0
+        if has_meta:
+            return "bin"
+    jsonl_files = [
+        Path(p) for p in glob.glob(str(root / "**" / "*.jsonl"), recursive=True)
+    ]
+    if jsonl_files:
+        return "jsonl"
     raise FileNotFoundError(f"No supported data files found at {load_path}")
 
 
-class BaseSegmentFetcher:
+class Store(ABC):
-    """Fetches data segments across multiple tensor segments.
+    """String keys -> segmented tensors with ``fetch(begin, end, keys)``.
 
-    Maintains cumulative lengths for efficient range queries across
+    Each key maps to one or more tensor segments (no forced concatenation).
-    multiple discontinuous segments.
+    ``len(store)`` returns ``self._length`` (explicit, O(1)), the minimum
-    """
+    total element count across all keys.
 
-    def __init__(self, segments: List[Tensor]):
+    Subclasses fill ``self._data`` and ``self._cum`` during ``load()``
-        self.segments = segments
+    via ``_normalize()``.
-        self.cum_lengths = []
-
-        total = 0
-        for seg in segments:
-            total += torch.numel(seg)
-            self.cum_lengths.append(total)
-
-        self.total_length = total
-
-    def __len__(self) -> int:
-        return self.total_length
-
-    def fetch_data(self, begin_idx: int, end_idx: int) -> Tensor:
-        """Fetch data in the range [begin_idx, end_idx)."""
-        if not (
-            0 <= begin_idx < self.total_length and 0 <= end_idx <= self.total_length
-        ):
-            raise ValueError("begin_idx or end_idx out of bounds")
-        if begin_idx >= end_idx:
-            return torch.tensor([], dtype=torch.long)
-
-        seg_start_idx = bisect.bisect_right(self.cum_lengths, begin_idx)
-        seg_end_idx = bisect.bisect_left(self.cum_lengths, end_idx)
-
-        result_segments = []
-
-        for i in range(seg_start_idx, seg_end_idx + 1):
-            prev_cum = self.cum_lengths[i - 1] if i > 0 else 0
-            start = max(begin_idx - prev_cum, 0)
-            end = min(end_idx - prev_cum, len(self.segments[i]))
-            result_segments.append(self.segments[i][start:end])
-
-        return torch.cat(result_segments, dim=0)
-
-
-class MultiSegmentFetcher:
-    """Manages multiple segment fetchers for different data keys."""
-
-    def __init__(self, multi_segments: Dict):
-        self.multi_keys = list(multi_segments.keys())
-        self.multi_fetchers = {
-            key: BaseSegmentFetcher(segments)
-            for key, segments in multi_segments.items()
-        }
-
-    def __len__(self) -> int:
-        """Returns the minimum length across all fetchers."""
-        if not self.multi_fetchers:
-            return 0
-        len_list = [len(seg) for seg in self.multi_fetchers.values()]
-        return min(len_list)
-
-    def key_fetch(
-        self, begin_idx: int, end_idx: int, keys: Union[str, List[str]]
-    ) -> Dict:
-        """Fetch data for specific keys."""
-        fetch_dict = {}
-        keys = [keys] if isinstance(keys, str) else keys
-
-        for key in keys:
-            fetcher = self.multi_fetchers[key]
-            fetch_tensor = fetcher.fetch_data(begin_idx, end_idx)
-            fetch_dict[key] = fetch_tensor
-
-        return fetch_dict if len(keys) > 1 else fetch_dict[keys[0]]
-
-    def fetch_data(self, begin_idx: int, end_idx: int) -> Dict:
-        """Fetch all keys."""
-        return self.key_fetch(begin_idx, end_idx, self.multi_keys)
-
-
-class BaseStorage(ABC):
-    """Abstract storage backend for loading and dispatching data.
-
-    Storage encapsulates format-specific loading and provides a uniform
-    interface for data access and length observation. Subclasses handle
-    different data formats (HDF5, JSON, etc.) while exposing the same
-    fetch interface.
     """
 
     def __init__(self):
-        self._fetcher: Optional[MultiSegmentFetcher] = None
+        self._data: Dict[str, List[Tensor]] = {}
+        self._cum: Dict[str, List[int]] = {}
+        self._length: int = 0
 
     @abstractmethod
-    def load(self, load_path: str, tokenizer=None) -> None:
+    def load(self, path: str) -> None:
-        """Load data from the given path into internal fetcher."""
         raise NotImplementedError
 
-    def __len__(self) -> int:
-        """Total number of raw elements (tokens) in storage."""
-        if self._fetcher is None:
-            return 0
-        return len(self._fetcher)
-
-    def fetch(self, begin_idx: int, end_idx: int, keys: Union[str, List[str]]):
-        """Fetch data for the given keys and index range.
-
-        Args:
-            begin_idx: Starting index (inclusive)
-            end_idx: Ending index (exclusive)
-            keys: Single key or list of keys to fetch
-
-        Returns:
-            Tensor if single key, Dict[str, Tensor] if multiple keys
-        """
-        if self._fetcher is None:
-            raise RuntimeError("Storage not loaded")
-        return self._fetcher.key_fetch(begin_idx, end_idx, keys)
-
     @property
     def keys(self) -> List[str]:
-        """Return the data keys available in this storage."""
+        return list(self._data.keys())
-        if self._fetcher is None:
+
-            return []
+    def __len__(self) -> int:
-        return self._fetcher.multi_keys
+        return self._length
+
+    def fetch(
+        self,
+        begin: int,
+        end: int,
+        keys: Union[str, List[str]],
+    ):
+        if not self._data:
+            raise RuntimeError("Store not loaded")
+        if not (0 <= begin < self._length and 0 <= end <= self._length):
+            raise ValueError(
+                f"Index out of bounds: begin={begin}, end={end}, length={self._length}"
+            )
+        if isinstance(keys, str):
+            return self._fetch_key(keys, begin, end)
+        return {k: self._fetch_key(k, begin, end) for k in keys}
+
+    def _fetch_key(self, key: str, begin: int, end: int) -> Tensor:
+        """Fetch slice [begin, end) across potentially multiple segments."""
+        segments = self._data[key]
+        cum = self._cum[key]
+        seg_start = bisect.bisect_right(cum, begin)
+        seg_end = bisect.bisect_left(cum, end)
+
+        results = []
+        for i in range(seg_start, seg_end + 1):
+            prev = cum[i - 1] if i > 0 else 0
+            s = max(begin - prev, 0)
+            e = min(end - prev, segments[i].shape[0])
+            results.append(segments[i][s:e])
+
+        return results[0] if len(results) == 1 else torch.cat(results, dim=0)
+
+    def _normalize(self, raw: Dict[str, List[Tensor]]):
+        """Register segments and pre-compute cumulative lengths.
+
+        Does NOT concatenate — segments are kept as-is to avoid OOM on
+        large datasets.  Sets ``self._length`` to the minimum total
+        element count across all keys.
+        """
+        for key, tensors in raw.items():
+            self._data[key] = tensors
+            cum = []
+            total = 0
+            for t in tensors:
+                total += t.shape[0]
+                cum.append(total)
+            self._cum[key] = cum
+        self._length = (
+            min((cum[-1] if cum else 0) for cum in self._cum.values())
+            if self._cum
+            else 0
+        )
 
 
-class StorageFactory(BaseFactory["BaseStorage"]):
+class StoreFactory(BaseFactory["Store"]):
-    """Factory for creating storage backends by type name.
+    """Factory for creating Store instances by type name.
 
-    Example:
+    Example::
-        @StorageFactory.register("custom")
+
-        class CustomStorage(BaseStorage):
+        @StoreFactory.register("custom")
+        class CustomStore(Store):
             ...
-
-        storage = StorageFactory.create("custom")
     """
 
-    @classmethod
-    def _validate_component(cls, storage_cls: type) -> None:
-        if not issubclass(storage_cls, BaseStorage):
-            raise TypeError(f"{storage_cls.__name__} must inherit from BaseStorage")
 
-
+@StoreFactory.register("h5")
-@StorageFactory.register("h5")
+class H5Store(Store):
-class H5Storage(BaseStorage):
     """HDF5-based storage backend (pre-tokenized data)."""
 
-    def load(self, load_path: str, tokenizer=None) -> None:
+    def load(self, path: str):
-        segments = load_h5(load_path)
+        self._normalize(load_h5(path))
-        self._fetcher = MultiSegmentFetcher(segments)
 
 
-@StorageFactory.register("json")
+@StoreFactory.register("bin")
-class JSONStorage(BaseStorage):
+class MmapStore(Store):
-    """JSON-based storage backend.
+    """Memory-mapped binary storage backend.
 
-    Supports two modes:
+    Each key is a single .bin file backed by ``np.memmap(mode="r")``.
-    - Pre-tokenized: JSON values are List[List[int]], loaded as-is.
+    No per-process memory duplication — all DataLoader workers share the
-    - Raw text: JSON values are List[str], tokenized via ``tokenizer``
+    same OS page-cache pages.
-      callable (str -> List[int]) at load time.
+
+    Format on disk::
+
+        data_root/
+          meta.json          # {key: {shape, dtype}, ...}
+          <key>.bin          # raw numpy array, one per key
     """
 
-    def load(self, load_path: str, tokenizer=None) -> None:
+    def load(self, path: str):
-        segments = load_json(load_path, tokenizer=tokenizer)
+        self._mmap_refs = []
-        self._fetcher = MultiSegmentFetcher(segments)
+        root = Path(path)
+        all_raw: Dict[str, List[Tensor]] = {}
+        meta_paths = [
+            Path(p) for p in glob.glob(str(root / "**" / "meta.json"), recursive=True)
+        ]
+        for meta_path in meta_paths:
+            raw = load_bin(str(meta_path.parent))
+            for key, tensors in raw.items():
+                if key not in all_raw:
+                    all_raw[key] = []
+                all_raw[key].extend(tensors)
+        if not meta_paths:
+            raise FileNotFoundError(f"No meta.json found under {path}")
+        self._normalize(all_raw)
+        for tensors in self._data.values():
+            self._mmap_refs.extend(tensors)
+
+
+@StoreFactory.register("jsonl")
+class JsonlStore(Store):
+    """On-the-fly tokenization store for raw JSONL files.
+
+    A JSONL dataset directory contains ``*.jsonl`` files plus a
+    ``dataset_config.json`` file that follows the same schema as
+    :class:`PipelineConfig` with an additional ``tokenizer_path`` field.
+    Records are tokenized when the store is loaded and concatenated into
+    segmented tensors matching the key layout expected by the dataset
+    classes (``sequence``, ``loss_mask``, ``position_ids``, ...).
+    """
+
+    CONFIG_NAME = "dataset_config.json"
+
+    def load(self, path: str):
+        root = Path(path)
+        config_path = root / self.CONFIG_NAME
+        if not config_path.exists():
+            raise FileNotFoundError(
+                f"JSONL dataset config not found: {config_path}. "
+                f"Expected {self.CONFIG_NAME} alongside *.jsonl files."
+            )
+
+        with open(config_path, "r", encoding="utf-8") as f:
+            raw_config = json.load(f)
+
+        tokenizer_path = raw_config.pop("tokenizer_path", None)
+        if tokenizer_path is None:
+            raise ValueError(
+                f"JSONL dataset config must specify 'tokenizer_path': {config_path}"
+            )
+
+        self.config = PipelineConfig.from_dict(raw_config)
+        tokenizer = AutoTokenizer.from_pretrained(tokenizer_path)
+        mask_builder = MaskBuilderFactory.create("sectioned")
+        position_strategy = PositionIdStrategyFactory.create(
+            self.config.output.position_ids_mode
+        )
+
+        raw: Dict[str, List[Tensor]] = {}
+        doc_sequences: List[List[int]] = []
+
+        for jsonl_path in sorted(root.glob("*.jsonl")):
+            with open(jsonl_path, "r", encoding="utf-8") as f:
+                for line in f:
+                    line = line.strip()
+                    if not line:
+                        continue
+                    try:
+                        item = json.loads(line)
+                    except json.JSONDecodeError:
+                        logger.warning(
+                            "Failed to parse JSON line in %s, skipping", jsonl_path
+                        )
+                        continue
+
+                    result = mask_builder.build(item, self.config, tokenizer)
+                    if result is None:
+                        continue
+
+                    result.pop("domain", None)
+                    primary_ids = self._primary_ids(result)
+                    if not primary_ids:
+                        continue
+
+                    doc_sequences.append(primary_ids)
+                    for key, ids in result.items():
+                        if key not in raw:
+                            raw[key] = []
+                        raw[key].append(torch.tensor(ids, dtype=self._infer_dtype(ids)))
+
+        pos_ids = position_strategy.generate(doc_sequences)
+        if pos_ids:
+            raw["position_ids"] = [torch.tensor(pos_ids, dtype=torch.int32)]
+
+        self._normalize(raw)
+
+    @staticmethod
+    def _primary_ids(result: dict) -> List[int]:
+        """Return the first integer list in *result* as the primary id sequence."""
+        for val in result.values():
+            if isinstance(val, list) and val and isinstance(val[0], int):
+                return val
+        return []
+
+    @staticmethod
+    def _infer_dtype(ids: List) -> torch.dtype:
+        """Infer tensor dtype from the first element of a token/value list."""
+        if ids and isinstance(ids[0], float):
+            return torch.float32
+        return torch.int32

astrai/factory.py

@@ -1,149 +1,103 @@
-"""Base factory class for extensible component registration."""
+"""Base factory with decorator-based registration and kwarg-filtered instantiation."""
 
 import inspect
+import sys
 from abc import ABC
-from typing import Callable, Dict, Generic, List, Optional, Tuple, Type, TypeVar
+from typing import (
+    Callable,
+    Dict,
+    ForwardRef,
+    Generic,
+    List,
+    Optional,
+    Type,
+    TypeVar,
+    Union,
+)
+from typing import get_args as _get_args
+from typing import get_origin as _get_origin
 
 T = TypeVar("T")
 
 
-class Registry:
+def _resolve_type(
-    """Flexible registry for component classes with category and priority support.
+    arg: Union[Type, str, ForwardRef], factory_cls: type
+) -> Optional[Type]:
+    """Resolve a generic type-arg (str forward-ref, ForwardRef, or class)."""
+    if not isinstance(arg, (str, ForwardRef)):
+        return arg
 
-    This registry stores component classes with optional metadata (category, priority).
+    name = arg if isinstance(arg, str) else arg.__forward_arg__
-    It provides methods for registration, retrieval, and listing with filtering.
+    if name == factory_cls.__name__:
-    """
+        return factory_cls
 
-    def __init__(self):
+    mod = sys.modules.get(factory_cls.__module__)
-        self._entries = {}  # name -> (component_cls, category, priority)
+    if mod is None:
+        return None
+    ns = vars(mod)
 
-    def register(
+    if isinstance(arg, ForwardRef):
-        self,
+        return arg._evaluate(ns, None, recursive_guard=frozenset())
-        name: str,
-        component_cls: Type,
-        category: Optional[str] = None,
-        priority: int = 0,
-    ) -> None:
-        """Register a component class with optional category and priority."""
-        if name in self._entries:
-            raise ValueError(f"Component '{name}' is already registered")
-        self._entries[name] = (component_cls, category, priority)
 
-    def get(self, name: str) -> Type:
+    return ns.get(name)
-        """Get component class by name."""
-        if name not in self._entries:
-            raise KeyError(f"Component '{name}' not found in registry")
-        return self._entries[name][0]
-
-    def get_with_metadata(self, name: str) -> Tuple[Type, Optional[str], int]:
-        """Get component class with its metadata."""
-        entry = self._entries.get(name)
-        if entry is None:
-            raise KeyError(f"Component '{name}' not found in registry")
-        return entry
-
-    def contains(self, name: str) -> bool:
-        """Check if a name is registered."""
-        return name in self._entries
-
-    def list_names(self) -> List[str]:
-        """Return list of registered component names."""
-        return sorted(self._entries.keys())
-
-    def list_by_category(self, category: str) -> List[str]:
-        """Return names of components belonging to a specific category."""
-        return sorted(
-            name for name, (_, cat, _) in self._entries.items() if cat == category
-        )
-
-    def list_by_priority(self, reverse: bool = False) -> List[str]:
-        """Return names sorted by priority (default ascending)."""
-        return sorted(
-            self._entries.keys(),
-            key=lambda name: self._entries[name][2],
-            reverse=reverse,
-        )
-
-    def entries(self) -> Dict[str, Tuple[Type, Optional[str], int]]:
-        """Return raw entries dictionary."""
-        return self._entries.copy()
 
 
 class BaseFactory(ABC, Generic[T]):
-    """Generic factory class for component registration and creation.
+    """Generic factory with decorator-based component registration.
 
-    This base class provides a decorator-based registration pattern
+        class MyFactory(BaseFactory[MyBase]):
-    for creating extensible component factories.
-
-    Example usage:
-        class MyFactory(BaseFactory[MyBaseClass]):
             pass
 
         @MyFactory.register("custom")
-        class CustomComponent(MyBaseClass):
+        class CustomComponent(MyBase):
             ...
 
-        component = MyFactory.create("custom", *args, **kwargs)
+        obj = MyFactory.create("custom", *args, **kwargs)
+
+    ``create()`` filters kwargs to match the component's ``__init__``
+    signature so components don't need ``**kwargs`` just to absorb
+    unrelated parameters.
     """
 
-    _registry: Registry
+    _entries: Dict[str, Type[T]]
 
     def __init_subclass__(cls, **kwargs):
         super().__init_subclass__(**kwargs)
-        cls._registry = Registry()
+        for orig_base in getattr(cls, "__orig_bases__", ()):
+            if _get_origin(orig_base) is BaseFactory:
+                (arg,) = _get_args(orig_base)
+                cls._entries = {}
+                cls._component_base = _resolve_type(arg, cls)
+                return
 
     @classmethod
-    def register(
+    def register(cls, name: str) -> Callable[[Type[T]], Type[T]]:
-        cls, name: str, category: Optional[str] = None, priority: int = 0
+        """Decorator to register a component class.
-    ) -> Callable[[Type[T]], Type[T]]:
-        """Decorator to register a component class with optional category and priority.
 
-        Args:
+        Validates that the decorated class inherits from the generic
-            name: Registration name for the component
+        type parameter ``T`` declared on the factory.
-            category: Optional category for grouping components
-            priority: Priority for ordering (default 0)
-
-        Returns:
-            Decorator function that registers the component class
-
-        Raises:
-            TypeError: If the decorated class doesn't inherit from the base type
         """
 
         def decorator(component_cls: Type[T]) -> Type[T]:
             cls._validate_component(component_cls)
-            cls._registry.register(
+            if name in cls._entries:
-                name, component_cls, category=category, priority=priority
+                raise ValueError(f"Component '{name}' is already registered")
-            )
+            cls._entries[name] = component_cls
             return component_cls
 
         return decorator
 
     @classmethod
     def create(cls, name: str, *args, **kwargs) -> T:
-        """Create a component instance by name.
+        """Create a component instance by name, filtering kwargs to match
-
+        the component's ``__init__`` signature.
-        Filters kwargs to match the component's __init__ signature,
-        so components don't need to declare **kwargs just to absorb
-        parameters meant for other components.
-
-        Args:
-            name: Registered name of the component
-            *args: Positional arguments passed to component constructor
-            **kwargs: Keyword arguments passed to component constructor
-
-        Returns:
-            Component instance
-
-        Raises:
-            ValueError: If the component name is not registered
         """
-        if not cls._registry.contains(name):
+        entry = cls._entries.get(name)
+        if entry is None:
             raise ValueError(
-                f"Unknown component: '{name}'. "
+                f"Unknown component: '{name}'. Supported types: {sorted(cls._entries)}"
-                f"Supported types: {sorted(cls._registry.list_names())}"
             )
-        component_cls = cls._registry.get(name)
+        component_cls = entry
         sig = inspect.signature(component_cls.__init__)
         has_var_kwargs = any(
             p.kind == inspect.Parameter.VAR_KEYWORD for p in sig.parameters.values()
@@ -158,69 +112,33 @@ class BaseFactory(ABC, Generic[T]):
         return component_cls(*args, **kwargs)
 
     @classmethod
-    def _validate_component(cls, component_cls: Type[T]) -> None:
+    def _validate_component(cls, component_cls: Type[T]):
-        """Validate that the component class is valid for this factory.
+        """Validate the decorated class inherits from the factory's base type.
 
-        Override this method in subclasses to add custom validation.
+        Override for custom validation beyond ``issubclass``.
-
-        Args:
-            component_cls: Component class to validate
-
-        Raises:
-            TypeError: If the component class is invalid
         """
-        pass
+        base = cls._component_base
+        if base is not None and not issubclass(component_cls, base):
+            raise TypeError(
+                f"{component_cls.__name__} must inherit from {base.__name__}"
+            )
 
     @classmethod
     def get_component_class(cls, name: str) -> Type[T]:
-        """Get the registered component class by name without instantiating it.
+        """Get the registered component class without instantiating it."""
-
+        entry = cls._entries.get(name)
-        Args:
+        if entry is None:
-            name: Registered name of the component
-
-        Returns:
-            The component class itself
-
-        Raises:
-            ValueError: If the component name is not registered
-        """
-        if not cls._registry.contains(name):
             raise ValueError(
-                f"Unknown component: '{name}'. "
+                f"Unknown component: '{name}'. Supported types: {sorted(cls._entries)}"
-                f"Supported types: {sorted(cls._registry.list_names())}"
             )
-        return cls._registry.get(name)
+        return entry
 
     @classmethod
-    def list_registered(cls) -> list:
+    def list_registered(cls) -> List[str]:
-        """List all registered component names.
+        """List all registered component names."""
-
+        return sorted(cls._entries)
-        Returns:
-            List of registered component names
-        """
-        return cls._registry.list_names()
 
     @classmethod
     def is_registered(cls, name: str) -> bool:
-        """Check if a component name is registered.
+        """Check if a component name is registered."""
-
+        return name in cls._entries
-        Args:
-            name: Component name to check
-
-        Returns:
-            True if registered, False otherwise
-        """
-        return cls._registry.contains(name)
-
-    @classmethod
-    def list_by_category(cls, category: str) -> List[str]:
-        """List registered component names in a category."""
-        return cls._registry.list_by_category(category)
-
-    @classmethod
-    def list_by_priority(cls, reverse: bool = False) -> List[str]:
-        """List registered component names sorted by priority."""
-        return cls._registry.list_by_priority(reverse)
-
-
-__all__ = ["Registry", "BaseFactory"]

astrai/inference/__init__.py

@@ -2,31 +2,42 @@
 
 Layers:
   - core/:        Core inference loop (cache, executor, scheduler, task)
-  - api/:            HTTP protocol handlers (OpenAI, Anthropic)
+  - api/:         HTTP orchestration (ProtocolHandler, server)
+  - protocols/:   Response builders (OpenAI, Anthropic)
+  - transport/:   SSE transport utilities
   - engine.py:    Facade (InferenceEngine), Value Object (GenerationRequest)
   - sample.py:    Strategy pattern (TemperatureStrategy, TopKStrategy, TopPStrategy)
 """
 
 from astrai.inference.api import (
-    AnthropicHandler,
     AnthropicMessage,
+    BaseToolParser,
     ChatCompletionRequest,
     ChatMessage,
+    FunctionDef,
+    GenContext,
     MessagesRequest,
-    OpenAIHandler,
     ProtocolHandler,
+    SimpleJsonToolParser,
     StopChecker,
-    StreamContext,
+    ToolDef,
-    app,
+    ToolParserFactory,
+    get_app,
     run_server,
 )
+from astrai.inference.api.anthropic import AnthropicResponseBuilder
+from astrai.inference.api.openai import OpenAIResponseBuilder
 from astrai.inference.core import (
     STOP,
     Allocator,
+    CacheView,
+    ContiguousCache,
+    ContiguousCacheView,
     Executor,
     InferenceScheduler,
     KVCache,
-    KvcacheView,
+    PageCache,
+    PageCacheView,
     PagePool,
     PrefixCache,
     Storage,
@@ -36,10 +47,7 @@ from astrai.inference.core import (
     TaskTable,
     page_hash,
 )
-from astrai.inference.engine import (
+from astrai.inference.engine import GenerationRequest, InferenceEngine
-    GenerationRequest,
-    InferenceEngine,
-)
 from astrai.inference.sample import (
     BaseSamplingStrategy,
     SamplingPipeline,
@@ -50,43 +58,46 @@ from astrai.inference.sample import (
 )
 
 __all__ = [
-    # Engine / Requests
     "InferenceEngine",
     "GenerationRequest",
-    # Core scheduler
     "InferenceScheduler",
     "Executor",
     "STOP",
     "Task",
     "TaskManager",
     "TaskStatus",
-    # Core cache
     "Allocator",
+    "CacheView",
     "KVCache",
-    "KvcacheView",
+    "ContiguousCache",
+    "ContiguousCacheView",
+    "PageCache",
+    "PageCacheView",
     "PagePool",
     "PrefixCache",
     "Storage",
     "TaskTable",
     "page_hash",
-    # Sampling (Strategy pattern)
     "sample",
     "BaseSamplingStrategy",
     "TemperatureStrategy",
     "TopKStrategy",
     "TopPStrategy",
     "SamplingPipeline",
-    # Protocol
     "ProtocolHandler",
     "StopChecker",
-    "StreamContext",
+    "GenContext",
-    "AnthropicHandler",
+    "BaseToolParser",
-    "OpenAIHandler",
+    "SimpleJsonToolParser",
-    # Server
+    "ToolParserFactory",
+    "OpenAIResponseBuilder",
+    "AnthropicResponseBuilder",
     "ChatMessage",
     "ChatCompletionRequest",
+    "FunctionDef",
+    "ToolDef",
     "AnthropicMessage",
     "MessagesRequest",
-    "app",
+    "get_app",
     "run_server",
 ]

astrai/inference/api/__init__.py

@@ -1,31 +1,39 @@
-"""Inference API: protocol handlers and FastAPI server."""
+"""Inference API: protocol handler, stop checker, tool parsers, and FastAPI server.
 
-from astrai.inference.api.protocol import (
+``app`` is no longer a module-level global. Use :func:`get_app` to access the
-    AnthropicHandler,
+lazy singleton FastAPI instance.
-    OpenAIHandler,
+"""
-    ProtocolHandler,
+
-    StopChecker,
+from astrai.inference.api.protocol import GenContext, ProtocolHandler, StopChecker
-    StreamContext,
-)
 from astrai.inference.api.server import (
     AnthropicMessage,
     ChatCompletionRequest,
     ChatMessage,
+    FunctionDef,
     MessagesRequest,
-    app,
+    ToolDef,
+    get_app,
     run_server,
 )
+from astrai.inference.api.tool_parser import (
+    BaseToolParser,
+    SimpleJsonToolParser,
+    ToolParserFactory,
+)
 
 __all__ = [
-    "AnthropicHandler",
-    "OpenAIHandler",
     "ProtocolHandler",
     "StopChecker",
-    "StreamContext",
+    "GenContext",
+    "BaseToolParser",
+    "SimpleJsonToolParser",
+    "ToolParserFactory",
     "AnthropicMessage",
     "ChatCompletionRequest",
     "ChatMessage",
+    "FunctionDef",
+    "ToolDef",
     "MessagesRequest",
-    "app",
+    "get_app",
     "run_server",
 ]

astrai/inference/api/anthropic.py

@@ -0,0 +1,142 @@
+"""Anthropic message completion response builder."""
+
+import time
+import uuid
+from typing import Any, Dict, List, Tuple, Union
+
+from pydantic import BaseModel
+
+from astrai.inference.api.protocol import (
+    GenContext,
+    ResponseBuilder,
+    StopInfo,
+    sse_event,
+)
+from astrai.inference.engine import InferenceEngine
+
+
+def _extract_text(content: Union[str, List[Dict[str, Any]]]) -> str:
+    if isinstance(content, str):
+        return content
+    if isinstance(content, list):
+        for block in content:
+            if isinstance(block, dict) and block.get("type") == "text":
+                return block.get("text", "")
+    return ""
+
+
+class AnthropicResponseBuilder(ResponseBuilder):
+    def prepare(
+        self, request: BaseModel, engine: InferenceEngine
+    ) -> Tuple[str, GenContext, List[str]]:
+        messages: List[Dict[str, str]] = []
+        system = getattr(request, "system", None)
+        if system:
+            messages.append({"role": "system", "content": system})
+        for m in request.messages:
+            text = _extract_text(m.content)
+            if text:
+                messages.append({"role": m.role, "content": text})
+        prompt = engine.tokenizer.apply_chat_template(messages, tokenize=False)
+        ctx = GenContext(
+            resp_id=f"msg_{uuid.uuid4().hex[:24]}",
+            created=int(time.time()),
+            model=request.model,
+        )
+        stop_sequences = getattr(request, "stop_sequences", None) or []
+        return prompt, ctx, stop_sequences
+
+    def format_stream_start(self, ctx: GenContext) -> List[str]:
+        return [
+            sse_event(
+                {
+                    "type": "message_start",
+                    "message": {
+                        "id": ctx.resp_id,
+                        "type": "message",
+                        "role": "assistant",
+                        "model": ctx.model,
+                        "content": [],
+                        "usage": {"input_tokens": ctx.prompt_tokens},
+                    },
+                },
+                event="message_start",
+            ),
+            sse_event(
+                {
+                    "type": "content_block_start",
+                    "index": 0,
+                    "content_block": {"type": "text", "text": ""},
+                },
+                event="content_block_start",
+            ),
+        ]
+
+    def format_chunk(self, token: str, **kwargs) -> List[str]:
+        return [
+            sse_event(
+                {
+                    "type": "content_block_delta",
+                    "index": 0,
+                    "delta": {"type": "text_delta", "text": token},
+                },
+                event="content_block_delta",
+            )
+        ]
+
+    def format_stream_end(self, ctx: GenContext, stop: StopInfo) -> List[str]:
+        events: List[str] = []
+        if stop.matched:
+            trimmed = stop.body[: stop.body.rfind(stop.matched)]
+            unyielded = trimmed[len(stop.yielded) :]
+            if unyielded:
+                events.append(
+                    sse_event(
+                        {
+                            "type": "content_block_delta",
+                            "index": 0,
+                            "delta": {"type": "text_delta", "text": unyielded},
+                        },
+                        event="content_block_delta",
+                    )
+                )
+        events.append(
+            sse_event(
+                {"type": "content_block_stop", "index": 0},
+                event="content_block_stop",
+            )
+        )
+        events.append(
+            sse_event(
+                {
+                    "type": "message_delta",
+                    "delta": {
+                        "stop_reason": "stop_sequence" if stop.matched else "end_turn",
+                        "stop_sequence": stop.matched,
+                    },
+                    "usage": {"output_tokens": ctx.completion_tokens},
+                },
+                event="message_delta",
+            )
+        )
+        events.append(sse_event({"type": "message_stop"}, event="message_stop"))
+        return events
+
+    def format_response(
+        self, ctx: GenContext, content: str, stop: StopInfo
+    ) -> Dict[str, Any]:
+        if stop.matched:
+            content = content[: content.rfind(stop.matched)]
+        return {
+            "id": ctx.resp_id,
+            "type": "message",
+            "role": "assistant",
+            "model": ctx.model,
+            "content": [{"type": "text", "text": content}],
+            "stop_reason": "stop_sequence" if stop.matched else "end_turn",
+            "stop_sequence": stop.matched,
+            "usage": {
+                "input_tokens": ctx.prompt_tokens,
+                "output_tokens": ctx.completion_tokens,
+            },
+        }

astrai/inference/api/openai.py

@@ -0,0 +1,278 @@
+"""OpenAI chat completion response builder."""
+
+import logging
+import time
+import uuid
+from typing import Any, Dict, List, Optional, Tuple, Union
+
+from pydantic import BaseModel
+
+from astrai.inference.api.protocol import (
+    GenContext,
+    ResponseBuilder,
+    StopInfo,
+    sse_event,
+)
+from astrai.inference.api.tool_parser import BaseToolParser, ToolParserFactory
+from astrai.inference.engine import InferenceEngine
+
+logger = logging.getLogger(__name__)
+
+_UNSUPPORTED_PARAMS = (
+    "n",
+    "presence_penalty",
+    "frequency_penalty",
+    "logit_bias",
+    "user",
+)
+
+
+def _resolve_tool_choice(
+    request: BaseModel,
+) -> Union[str, Dict[str, Any]]:
+    tc = getattr(request, "tool_choice", None)
+    if tc is None:
+        return "auto"
+    if isinstance(tc, str):
+        return tc
+    if isinstance(tc, dict):
+        return tc
+    return "auto"
+
+
+def _resolve_tools(request: BaseModel) -> Optional[List[Dict[str, Any]]]:
+    raw = getattr(request, "tools", None)
+    if not raw:
+        return None
+    if isinstance(raw, list):
+        return [t.model_dump() if hasattr(t, "model_dump") else t for t in raw]
+    return None
+
+
+class OpenAIResponseBuilder(ResponseBuilder):
+    def prepare(
+        self, request: BaseModel, engine: InferenceEngine
+    ) -> Tuple[str, GenContext, List[str]]:
+        messages = [{"role": m.role, "content": m.content} for m in request.messages]
+        tools = _resolve_tools(request)
+        prompt = engine.tokenizer.apply_chat_template(
+            messages, tokenize=False, tools=tools or []
+        )
+
+        self._resp_id = f"chatcmpl-{uuid.uuid4().hex[:12]}"
+        self._model = request.model
+
+        for param in _UNSUPPORTED_PARAMS:
+            value = getattr(request, param, None)
+            fields = getattr(type(request), "model_fields", {})
+            default = fields[param].default if param in fields else None
+            if value is not None and value != default:
+                logger.warning(
+                    "ChatCompletionRequest param '%s'=%r is not supported"
+                    " and will be ignored",
+                    param,
+                    value,
+                )
+
+        self._parser: Optional[BaseToolParser] = None
+        if tools:
+            tool_choice = _resolve_tool_choice(request)
+            self._parser = ToolParserFactory.create(
+                "simple_json", tools=tools, tool_choice=tool_choice
+            )
+        self._content_started = False
+
+        ctx = GenContext(
+            resp_id=self._resp_id,
+            created=int(time.time()),
+            model=self._model,
+        )
+        stop = request.stop
+        stop_sequences = (
+            [] if stop is None else [stop] if isinstance(stop, str) else stop
+        )
+        return prompt, ctx, stop_sequences
+
+    def format_stream_start(self, ctx: GenContext) -> List[str]:
+        return [
+            sse_event(
+                {
+                    "id": self._resp_id,
+                    "object": "chat.completion.chunk",
+                    "created": ctx.created,
+                    "model": self._model,
+                    "choices": [
+                        {
+                            "index": 0,
+                            "delta": {"role": "assistant"},
+                            "finish_reason": None,
+                        }
+                    ],
+                }
+            )
+        ]
+
+    def format_chunk(self, token: str, **kwargs) -> List[str]:
+        body = kwargs.get("body", "")
+        if self._parser is not None:
+            return self._format_tool_chunk(body, **kwargs)
+
+        return [
+            sse_event(
+                {
+                    "id": self._resp_id,
+                    "object": "chat.completion.chunk",
+                    "created": 0,
+                    "model": self._model,
+                    "choices": [
+                        {
+                            "index": 0,
+                            "delta": {"content": token},
+                            "finish_reason": None,
+                        }
+                    ],
+                }
+            )
+        ]
+
+    def _format_tool_chunk(self, body: str, **kwargs) -> List[str]:
+        deltas = self._parser.feed(
+            body,
+            current_token_ids=kwargs.get("current_token_ids"),
+            delta_token_ids=kwargs.get("delta_token_ids"),
+        )
+        events: List[str] = []
+        for d in deltas:
+            if "content" in d:
+                if not self._content_started:
+                    events.append(self._role_chunk())
+                    self._content_started = True
+                events.append(
+                    sse_event(
+                        {
+                            "id": self._resp_id,
+                            "object": "chat.completion.chunk",
+                            "created": 0,
+                            "model": self._model,
+                            "choices": [
+                                {
+                                    "index": 0,
+                                    "delta": {"content": d["content"]},
+                                    "finish_reason": None,
+                                }
+                            ],
+                        }
+                    )
+                )
+            elif "tool_calls" in d:
+                if not self._content_started:
+                    events.append(self._role_chunk())
+                    self._content_started = True
+                events.append(
+                    sse_event(
+                        {
+                            "id": self._resp_id,
+                            "object": "chat.completion.chunk",
+                            "created": 0,
+                            "model": self._model,
+                            "choices": [
+                                {
+                                    "index": 0,
+                                    "delta": {"tool_calls": d["tool_calls"]},
+                                    "finish_reason": None,
+                                }
+                            ],
+                        }
+                    )
+                )
+        return events
+
+    def _role_chunk(self) -> str:
+        return sse_event(
+            {
+                "id": self._resp_id,
+                "object": "chat.completion.chunk",
+                "created": 0,
+                "model": self._model,
+                "choices": [
+                    {
+                        "index": 0,
+                        "delta": {"role": "assistant"},
+                        "finish_reason": None,
+                    }
+                ],
+            }
+        )
+
+    def format_stream_end(self, ctx: GenContext, stop: StopInfo) -> List[str]:
+        finish_reason = "stop"
+        if self._parser is not None and self._parser.has_tool_calls:
+            finish_reason = "tool_calls"
+        return [
+            sse_event(
+                {
+                    "id": self._resp_id,
+                    "object": "chat.completion.chunk",
+                    "created": ctx.created,
+                    "model": self._model,
+                    "choices": [
+                        {"index": 0, "delta": {}, "finish_reason": finish_reason}
+                    ],
+                }
+            ),
+            sse_event(
+                {
+                    "prompt_tokens": ctx.prompt_tokens,
+                    "completion_tokens": ctx.completion_tokens,
+                    "total_tokens": ctx.prompt_tokens + ctx.completion_tokens,
+                }
+            ),
+        ]
+
+    def format_response(
+        self, ctx: GenContext, content: str, stop: StopInfo
+    ) -> Dict[str, Any]:
+        if self._parser is not None:
+            parsed = self._parser.parse_complete(content)
+            if parsed and parsed.get("tool_calls"):
+                return {
+                    "id": self._resp_id,
+                    "object": "chat.completion",
+                    "created": ctx.created,
+                    "model": self._model,
+                    "choices": [
+                        {
+                            "index": 0,
+                            "message": {
+                                "role": "assistant",
+                                "content": parsed.get("content"),
+                                "tool_calls": parsed["tool_calls"],
+                            },
+                            "finish_reason": "tool_calls",
+                        }
+                    ],
+                    "usage": {
+                        "prompt_tokens": ctx.prompt_tokens,
+                        "completion_tokens": ctx.completion_tokens,
+                        "total_tokens": ctx.prompt_tokens + ctx.completion_tokens,
+                    },
+                }
+
+        return {
+            "id": self._resp_id,
+            "object": "chat.completion",
+            "created": ctx.created,
+            "model": self._model,
+            "choices": [
+                {
+                    "index": 0,
+                    "message": {"role": "assistant", "content": content},
+                    "finish_reason": "stop",
+                }
+            ],
+            "usage": {
+                "prompt_tokens": ctx.prompt_tokens,
+                "completion_tokens": ctx.completion_tokens,
+                "total_tokens": ctx.prompt_tokens + ctx.completion_tokens,
+            },
+        }

astrai/inference/api/protocol.py

@@ -1,15 +1,13 @@
-"""Protocol handlers for OpenAI and Anthropic chat completion APIs.
+"""Orchestration layer: ProtocolHandler, StopChecker, GenContext, StopInfo, ResponseBuilder, SSE utils.
 
-Template Method + Builder patterns eliminate the 45% code duplication between
+ProtocolHandler orchestrates the async generation loop and delegates
-stream/non-stream branches and across protocol adapters.
+protocol-specific formatting to a ResponseBuilder.
 """
 
 import json
-import time
-import uuid
 from abc import ABC, abstractmethod
 from dataclasses import dataclass
-from typing import Any, Dict, List, Optional, Union
+from typing import Any, AsyncGenerator, Dict, List, Optional, Tuple, Union
 
 from fastapi.responses import StreamingResponse
 from pydantic import BaseModel
@@ -17,7 +15,7 @@ from pydantic import BaseModel
 from astrai.inference.engine import InferenceEngine
 
 
-def _sse_event(data: Dict[str, Any], event: Optional[str] = None) -> str:
+def sse_event(data: Dict[str, Any], event: Optional[str] = None) -> str:
     lines: List[str] = []
     if event:
         lines.append(f"event: {event}")
@@ -26,22 +24,28 @@ def _sse_event(data: Dict[str, Any], event: Optional[str] = None) -> str:
     return "\n".join(lines)
 
 
-def _sse_done() -> str:
+def sse_done() -> str:
     return "data: [DONE]\n\n"
 
 
 @dataclass
-class StreamContext:
+class GenContext:
-    """Shared state across the streaming generation lifecycle."""
+    """Per-generation metadata passed to builder format methods."""
 
     resp_id: str
     created: int
     model: str
-    prompt_tokens: int
+    prompt_tokens: int = 0
     completion_tokens: int = 0
-    accumulated: str = ""
+
-    stop_matched: Optional[str] = None
+
-    last_yield_trimmed: str = ""
+@dataclass
+class StopInfo:
+    """Stop-check result passed to format_stream_end / format_response."""
+
+    matched: Optional[str] = None
+    body: str = ""
+    yielded: str = ""
 
 
 class StopChecker:
@@ -56,95 +60,67 @@ class StopChecker:
                 return seq
         return None
 
-    def trim(self, text: str, matched: str) -> str:
-        idx = text.rfind(matched)
-        return text[:idx] if idx != -1 else text
 
-    @property
+class ResponseBuilder(ABC):
-    def has_sequences(self) -> bool:
+    """Interface for protocol-specific response formatting.
-        return len(self._sequences) > 0
 
-
+    A new protocol requires one concrete builder implementing 5 methods.
-class ProtocolHandler(ABC):
-    """Template-method base for API protocol handlers.
-
-    Subclasses implement format hooks; the base class orchestrates the
-    generate-async loop and SSE/JSON response construction.
-
-    Lifecycle::
-
-        handle()
-          ├─ build_prompt()          # protocol-specific prompt assembly
-          ├─ create_response_id()    # unique response identifier
-          ├─ [stream]
-          │   ├─ format_stream_start()
-          │   ├─ format_stream_token()  × N
-          │   │   └─ on_token() hook for stop-sequence interception
-          │   └─ format_stream_end()
-          └─ [non-stream]
-              ├─ (accumulate tokens)
-              └─ format_non_stream_response()
     """
 
-    request_model: type[BaseModel]
+    @abstractmethod
+    def prepare(
+        self, request: BaseModel, engine: InferenceEngine
+    ) -> Tuple[str, GenContext, List[str]]:
+        """Return (prompt, ctx, stop_sequences) for a generation request."""
 
-    def __init__(self, request: BaseModel, engine: InferenceEngine):
+    @abstractmethod
+    def format_stream_start(self, ctx: GenContext) -> List[str]:
+        """SSE events that open the stream."""
+
+    @abstractmethod
+    def format_chunk(self, token: str, **kwargs) -> List[str]:
+        """SSE events for a single generated token.
+
+        ``body`` (the full accumulated text so far) is always provided
+        as a keyword argument. Additional keyword arguments such as
+        ``current_token_ids`` and ``delta_token_ids`` may be included
+        for tool parsers that need token-level information.
+        Returns a list of SSE event strings (may be empty).
+        """
+
+    @abstractmethod
+    def format_stream_end(self, ctx: GenContext, stop: StopInfo) -> List[str]:
+        """SSE events that close the stream."""
+
+    @abstractmethod
+    def format_response(
+        self, ctx: GenContext, content: str, stop: StopInfo
+    ) -> Dict[str, Any]:
+        """JSON response body for non-streaming mode."""
+
+
+class ProtocolHandler:
+    """Orchestrates the generation loop, delegates formatting to a builder.
+
+    Usage::
+
+        handler = ProtocolHandler(request, engine, OpenAIResponseBuilder())
+        response = await handler.handle()
+    """
+
+    def __init__(
+        self, request: BaseModel, engine: InferenceEngine, builder: ResponseBuilder
+    ):
         self.request = request
         self.engine = engine
-
+        self.builder = builder
-    @abstractmethod
-    def build_prompt(self) -> str:
-        """Build the full prompt string from the request messages."""
-
-    @abstractmethod
-    def create_response_id(self) -> str:
-        """Generate a unique response ID following the protocol convention."""
-
-    @abstractmethod
-    def format_stream_start(self, ctx: StreamContext) -> List[str]:
-        """Yield SSE events that open the stream (role marker, metadata)."""
-
-    @abstractmethod
-    def format_stream_token(self, ctx: StreamContext, token: str) -> str:
-        """Yield an SSE event for a single generated token."""
-
-    @abstractmethod
-    def format_stream_end(self, ctx: StreamContext) -> List[str]:
-        """Yield SSE events that close the stream (finish reason, usage stats)."""
-
-    @abstractmethod
-    def format_non_stream_response(
-        self, ctx: StreamContext, content: str
-    ) -> Dict[str, Any]:
-        """Build the JSON response body for non-streaming mode."""
-
-    def get_stop_sequences(self) -> List[str]:
-        return []
-
-    def create_stop_checker(self) -> StopChecker:
-        return StopChecker(self.get_stop_sequences())
-
-    def on_token(
-        self, ctx: StreamContext, token: str, stop_checker: StopChecker
-    ) -> Optional[str]:
-        """Hook after each token is appended to accumulated.
-
-        Return a matched stop-sequence string to break the loop,
-        or None to continue.
-
-        """
-        return None
 
     async def handle(self) -> Union[StreamingResponse, Dict[str, Any]]:
-        ctx = StreamContext(
+        prompt, ctx, stop_sequences = self.builder.prepare(self.request, self.engine)
-            resp_id=self.create_response_id(),
+        ctx.prompt_tokens = len(self.engine.tokenizer.encode(prompt))
-            created=int(time.time()),
-            model=self.request.model,
-            prompt_tokens=self._count_prompt_tokens(),
-        )
 
         agen = self.engine.generate_async(
-            prompt=self.build_prompt(),
+            prompt=prompt,
             max_tokens=self.request.max_tokens,
             temperature=self.request.temperature,
             top_p=self.request.top_p,
@@ -152,33 +128,47 @@ class ProtocolHandler(ABC):
         )
 
         if self.request.stream:
-            return self._handle_stream(agen, ctx)
+            return self._handle_stream(agen, ctx, stop_sequences)
         else:
-            return await self._handle_non_stream(agen, ctx)
+            return await self._handle_non_stream(agen, ctx, stop_sequences)
 
-    def _count_prompt_tokens(self) -> int:
+    def _handle_stream(
-        return len(self.engine.tokenizer.encode(self.build_prompt()))
+        self, agen: AsyncGenerator, ctx: GenContext, stop_sequences: List[str]
-
+    ) -> StreamingResponse:
-    def _handle_stream(self, agen, ctx: StreamContext) -> StreamingResponse:
+        checker = StopChecker(stop_sequences)
-        stop_checker = self.create_stop_checker()
 
         async def event_stream():
-            for event in self.format_stream_start(ctx):
+            for event in self.builder.format_stream_start(ctx):
                 yield event
 
+            body = ""
+            yielded = ""
+            matched = None
+            token_ids: List[int] = []
             async for token in agen:
-                ctx.completion_tokens += 1
+                body += token
-                ctx.accumulated += token
 
-                matched = self.on_token(ctx, token, stop_checker)
+                new_ids = self.engine.tokenizer.encode(token)
+                token_ids.extend(new_ids)
+
+                matched = checker.check(body)
                 if matched:
                     break
 
-                yield self.format_stream_token(ctx, token)
+                ctx.completion_tokens += 1
-
+                for event in self.builder.format_chunk(
-            for event in self.format_stream_end(ctx):
+                    token,
+                    body=body,
+                    current_token_ids=token_ids,
+                    delta_token_ids=new_ids,
+                ):
                     yield event
-            yield _sse_done()
+                yielded += token
+
+            stop = StopInfo(matched=matched, body=body, yielded=yielded)
+            for event in self.builder.format_stream_end(ctx, stop):
+                yield event
+            yield sse_done()
 
         return StreamingResponse(
             event_stream(),
@@ -186,249 +176,24 @@ class ProtocolHandler(ABC):
             headers={"Cache-Control": "no-cache", "Connection": "keep-alive"},
         )
 
-    async def _handle_non_stream(self, agen, ctx: StreamContext) -> Dict[str, Any]:
+    async def _handle_non_stream(
-        stop_checker = self.create_stop_checker()
+        self, agen: AsyncGenerator, ctx: GenContext, stop_sequences: List[str]
+    ) -> Dict[str, Any]:
+        checker = StopChecker(stop_sequences)
         chunks: List[str] = []
+        body = ""
+        matched = None
 
         async for token in agen:
-            ctx.completion_tokens += 1
-            ctx.accumulated += token
             chunks.append(token)
+            body += token
 
-            matched = self.on_token(ctx, token, stop_checker)
+            matched = checker.check(body)
             if matched:
                 break
 
+            ctx.completion_tokens += 1
+
         content = "".join(chunks)
-        return self.format_non_stream_response(ctx, content)
+        stop = StopInfo(matched=matched, body=body)
-
+        return self.builder.format_response(ctx, content, stop)
-
-def _extract_text_content(content: Union[str, List[Dict[str, Any]]]) -> str:
-    """Extract plain text from an Anthropic content block (string or list)."""
-    if isinstance(content, str):
-        return content
-    if isinstance(content, list):
-        for block in content:
-            if isinstance(block, dict) and block.get("type") == "text":
-                return block.get("text", "")
-    return ""
-
-
-class OpenAIHandler(ProtocolHandler):
-    """OpenAI-compatible /v1/chat/completions handler."""
-
-    def build_prompt(self) -> str:
-        messages = [
-            {"role": m.role, "content": m.content} for m in self.request.messages
-        ]
-        return self.engine.tokenizer.apply_chat_template(messages, tokenize=False)
-
-    def create_response_id(self) -> str:
-        return f"chatcmpl-{uuid.uuid4().hex[:12]}"
-
-    def format_stream_start(self, ctx: StreamContext) -> List[str]:
-        return [
-            _sse_event(
-                {
-                    "id": ctx.resp_id,
-                    "object": "chat.completion.chunk",
-                    "created": ctx.created,
-                    "model": ctx.model,
-                    "choices": [
-                        {
-                            "index": 0,
-                            "delta": {"role": "assistant"},
-                            "finish_reason": None,
-                        }
-                    ],
-                }
-            )
-        ]
-
-    def format_stream_token(self, ctx: StreamContext, token: str) -> str:
-        return _sse_event(
-            {
-                "id": ctx.resp_id,
-                "object": "chat.completion.chunk",
-                "created": ctx.created,
-                "model": ctx.model,
-                "choices": [
-                    {"index": 0, "delta": {"content": token}, "finish_reason": None}
-                ],
-            }
-        )
-
-    def format_stream_end(self, ctx: StreamContext) -> List[str]:
-        return [
-            _sse_event(
-                {
-                    "id": ctx.resp_id,
-                    "object": "chat.completion.chunk",
-                    "created": ctx.created,
-                    "model": ctx.model,
-                    "choices": [{"index": 0, "delta": {}, "finish_reason": "stop"}],
-                }
-            ),
-            _sse_event(
-                {
-                    "prompt_tokens": ctx.prompt_tokens,
-                    "completion_tokens": ctx.completion_tokens,
-                    "total_tokens": ctx.prompt_tokens + ctx.completion_tokens,
-                }
-            ),
-        ]
-
-    def format_non_stream_response(
-        self, ctx: StreamContext, content: str
-    ) -> Dict[str, Any]:
-        return {
-            "id": ctx.resp_id,
-            "object": "chat.completion",
-            "created": ctx.created,
-            "model": ctx.model,
-            "choices": [
-                {
-                    "index": 0,
-                    "message": {"role": "assistant", "content": content},
-                    "finish_reason": "stop",
-                }
-            ],
-            "usage": {
-                "prompt_tokens": ctx.prompt_tokens,
-                "completion_tokens": ctx.completion_tokens,
-                "total_tokens": ctx.prompt_tokens + ctx.completion_tokens,
-            },
-        }
-
-
-class AnthropicHandler(ProtocolHandler):
-    """Anthropic-compatible /v1/messages handler."""
-
-    def __init__(self, *args, **kwargs):
-        super().__init__(*args, **kwargs)
-        self._yielded = ""
-
-    def build_prompt(self) -> str:
-        messages: List[Dict[str, str]] = []
-        system = getattr(self.request, "system", None)
-        if system:
-            messages.append({"role": "system", "content": system})
-        for m in self.request.messages:
-            content = _extract_text_content(m.content)
-            if content:
-                messages.append({"role": m.role, "content": content})
-        return self.engine.tokenizer.apply_chat_template(messages, tokenize=False)
-
-    def create_response_id(self) -> str:
-        return f"msg_{uuid.uuid4().hex[:24]}"
-
-    def get_stop_sequences(self) -> List[str]:
-        return getattr(self.request, "stop_sequences", None) or []
-
-    def on_token(
-        self, ctx: StreamContext, token: str, stop_checker: StopChecker
-    ) -> Optional[str]:
-        matched = stop_checker.check(ctx.accumulated)
-        if not matched:
-            return None
-
-        ctx.stop_matched = matched
-        trimmed = ctx.accumulated[: ctx.accumulated.rfind(matched)]
-        unyielded = trimmed[len(self._yielded) :]
-        if unyielded:
-            ctx.last_yield_trimmed = unyielded
-        return matched
-
-    def format_stream_start(self, ctx: StreamContext) -> List[str]:
-        return [
-            _sse_event(
-                {
-                    "type": "message_start",
-                    "message": {
-                        "id": ctx.resp_id,
-                        "type": "message",
-                        "role": "assistant",
-                        "model": ctx.model,
-                        "content": [],
-                        "usage": {"input_tokens": ctx.prompt_tokens},
-                    },
-                },
-                event="message_start",
-            ),
-            _sse_event(
-                {
-                    "type": "content_block_start",
-                    "index": 0,
-                    "content_block": {"type": "text", "text": ""},
-                },
-                event="content_block_start",
-            ),
-        ]
-
-    def format_stream_token(self, ctx: StreamContext, token: str) -> str:
-        self._yielded += token
-        return _sse_event(
-            {
-                "type": "content_block_delta",
-                "index": 0,
-                "delta": {"type": "text_delta", "text": token},
-            },
-            event="content_block_delta",
-        )
-
-    def format_stream_end(self, ctx: StreamContext) -> List[str]:
-        matched = ctx.stop_matched
-        events: List[str] = []
-        last_yielded = ctx.last_yield_trimmed
-        if last_yielded:
-            events.append(
-                _sse_event(
-                    {
-                        "type": "content_block_delta",
-                        "index": 0,
-                        "delta": {"type": "text_delta", "text": last_yielded},
-                    },
-                    event="content_block_delta",
-                )
-            )
-        events.append(
-            _sse_event(
-                {"type": "content_block_stop", "index": 0},
-                event="content_block_stop",
-            )
-        )
-        events.append(
-            _sse_event(
-                {
-                    "type": "message_delta",
-                    "delta": {
-                        "stop_reason": "stop_sequence" if matched else "end_turn",
-                        "stop_sequence": matched,
-                    },
-                    "usage": {"output_tokens": ctx.completion_tokens},
-                },
-                event="message_delta",
-            )
-        )
-        events.append(_sse_event({"type": "message_stop"}, event="message_stop"))
-        return events
-
-    def format_non_stream_response(
-        self, ctx: StreamContext, content: str
-    ) -> Dict[str, Any]:
-        matched = ctx.stop_matched
-        if matched:
-            content = content[: content.rfind(matched)]
-        return {
-            "id": ctx.resp_id,
-            "type": "message",
-            "role": "assistant",
-            "model": ctx.model,
-            "content": [{"type": "text", "text": content}],
-            "stop_reason": "stop_sequence" if matched else "end_turn",
-            "stop_sequence": matched,
-            "usage": {
-                "input_tokens": ctx.prompt_tokens,
-                "output_tokens": ctx.completion_tokens,
-            },
-        }

astrai/inference/api/server.py

@@ -3,6 +3,9 @@ OpenAI / Anthropic-compatible chat completion server backed by continuous-batchi
 
 Protocol-specific formatting is delegated to ``astrai.inference.protocol``.
 This module owns the FastAPI app, request/response schemas, and dependency wiring.
+
+``app`` is lazily constructed — importing this module does NOT create a FastAPI instance.
+Use :func:`get_app` to access the singleton.
 """
 
 import logging
@@ -12,22 +15,37 @@ from typing import Any, Dict, List, Optional, Union
 
 import torch
 import uvicorn
-from fastapi import FastAPI, HTTPException
+from fastapi import APIRouter, FastAPI, HTTPException
 from pydantic import BaseModel, Field
 
-from astrai.inference.api.protocol import AnthropicHandler, OpenAIHandler
+from astrai.inference.api.anthropic import AnthropicResponseBuilder
+from astrai.inference.api.openai import OpenAIResponseBuilder
+from astrai.inference.api.protocol import ProtocolHandler
 from astrai.inference.engine import InferenceEngine
 from astrai.model import AutoModel
 from astrai.tokenize import AutoTokenizer
 
 logger = logging.getLogger(__name__)
 
-_project_root = Path(__file__).parent.parent.parent
+_app_instance: Optional[FastAPI] = None
 
 
 class ChatMessage(BaseModel):
     role: str
-    content: str
+    content: Optional[str] = None
+    tool_calls: Optional[List[Dict[str, Any]]] = None
+    tool_call_id: Optional[str] = None
+
+
+class FunctionDef(BaseModel):
+    name: str
+    description: Optional[str] = None
+    parameters: Optional[Dict[str, Any]] = None
+
+
+class ToolDef(BaseModel):
+    type: str = "function"
+    function: FunctionDef
 
 
 class ChatCompletionRequest(BaseModel):
@@ -46,6 +64,8 @@ class ChatCompletionRequest(BaseModel):
     frequency_penalty: Optional[float] = Field(default=0.0, ge=-2.0, le=2.0)
     logit_bias: Optional[Dict[int, float]] = None
     user: Optional[str] = None
+    tools: Optional[List[ToolDef]] = None
+    tool_choice: Optional[Union[str, Dict[str, Any]]] = "auto"
 
 
 class AnthropicMessage(BaseModel):
@@ -82,17 +102,15 @@ async def lifespan(app: FastAPI):
         logger.info("Inference engine shutdown complete")
 
 
-app = FastAPI(title="AstrAI Inference Server", version="0.2.0", lifespan=lifespan)
+router = APIRouter()
 
 
 def _create_engine(
-    param_path: Optional[Path] = None,
+    param_path: Path,
     device: str = "cuda",
     dtype: torch.dtype = torch.bfloat16,
     max_batch_size: int = 16,
 ) -> InferenceEngine:
-    if param_path is None:
-        param_path = _project_root / "params"
     if not param_path.exists():
         raise FileNotFoundError(f"Parameter directory not found: {param_path}")
 
@@ -110,49 +128,66 @@ def _create_engine(
     return engine
 
 
+def get_app() -> FastAPI:
+    """Return the singleton FastAPI instance (lazily created on first call)."""
+    global _app_instance
+    if _app_instance is None:
+        _app_instance = FastAPI(
+            title="AstrAI Inference Server",
+            version="0.2.0",
+            lifespan=lifespan,
+        )
+        _app_instance.include_router(router)
+        _app_instance.state.server_config = {}
+        _app_instance.state.engine = None
+    return _app_instance
+
+
 def _get_engine() -> InferenceEngine:
-    engine = app.state.engine
+    engine = get_app().state.engine
     if engine is None:
         raise HTTPException(status_code=503, detail="Engine not initialized")
     return engine
 
 
-@app.get("/health")
+@router.get("/health")
 async def health():
+    app = get_app()
     return {
         "status": "ok",
         "model_loaded": app.state.engine is not None,
     }
 
 
-@app.get("/stats")
+@router.get("/stats")
 async def get_stats():
     return _get_engine().get_stats()
 
 
-@app.post("/v1/chat/completions")
+@router.post("/v1/chat/completions")
 async def chat_completion(request: ChatCompletionRequest):
     engine = _get_engine()
-    handler = OpenAIHandler(request, engine)
+    handler = ProtocolHandler(request, engine, OpenAIResponseBuilder())
     return await handler.handle()
 
 
-@app.post("/v1/messages")
+@router.post("/v1/messages")
 async def create_message(request: MessagesRequest):
     engine = _get_engine()
-    handler = AnthropicHandler(request, engine)
+    handler = ProtocolHandler(request, engine, AnthropicResponseBuilder())
     return await handler.handle()
 
 
 def run_server(
+    param_path: Path,
     host: str = "0.0.0.0",
     port: int = 8000,
     reload: bool = False,
     device: str = "cuda",
     dtype: torch.dtype = torch.bfloat16,
-    param_path: Optional[Path] = None,
     max_batch_size: int = 16,
 ):
+    app = get_app()
     app.state.server_config = {
         "device": device,
         "dtype": dtype,

astrai/inference/api/tool_parser.py

@@ -0,0 +1,325 @@
+"""Tool call parsers for extracting structured tool calls from model output.
+
+Patterned after vLLM's ToolParser abstraction. Each parser knows how to
+detect and incrementally extract tool calls from raw generated text.
+
+Subclasses may optionally consume ``token_ids`` for token-level parsing
+(e.g. Harmony / VLM-style parsers).
+"""
+
+import re
+import uuid
+from abc import ABC, abstractmethod
+from typing import Dict, List, Optional
+
+from astrai.factory import BaseFactory
+
+
+class BaseToolParser(ABC):
+    """Abstract tool call parser — one instance per request.
+
+    Maintains streaming state internally so that each call to :meth:`feed`
+    can diff against previously emitted content.
+
+    Parameters
+    ----------
+    tools : list of dict, optional
+        Tool definitions from the request.
+    tool_choice : str
+        ``"auto"`` / ``"required"`` / ``"none"`` or a named tool choice
+        dict.
+    """
+
+    def __init__(self, tools: Optional[List[Dict]] = None, tool_choice: str = "auto"):
+        self.tools = tools or []
+        self.tool_choice = tool_choice
+
+    @abstractmethod
+    def feed(
+        self,
+        body: str,
+        current_token_ids: Optional[List[int]] = None,
+        delta_token_ids: Optional[List[int]] = None,
+    ) -> List[Dict]:
+        """Feed the *full* accumulated text each step.
+
+        Returns a list of delta dicts to emit. Each delta is one of:
+
+        - ``{"content": "text"}``      — plain text delta
+        - ``{"tool_calls": [...]}``    — tool-call delta (OpenAI format)
+
+        Returns an empty list when nothing new should be emitted.
+
+        Parameters
+        ----------
+        body : str
+            The complete accumulated generated text so far.
+        current_token_ids : list of int, optional
+            All token IDs decoded into *body* (cumulative).
+        delta_token_ids : list of int, optional
+            Only the token IDs for this chunk.
+        """
+
+    @abstractmethod
+    def parse_complete(self, body: str) -> Optional[Dict]:
+        """Parse the *complete* generated text after generation ends.
+
+        Returns ``None`` when no tool calls were found, otherwise a dict
+        with ``content`` (str or None) and ``tool_calls`` (list of dicts).
+        """
+
+    @property
+    @abstractmethod
+    def has_tool_calls(self) -> bool:
+        """True if the parser detected at least one tool call in the stream."""
+
+
+class ToolParserFactory(BaseFactory["BaseToolParser"]):
+    pass
+
+
+_TOOL_CALL_HEAD_RE = re.compile(r'\{\s*"name"\s*:')
+
+
+def _scan_json(text: str, start: int = 0):
+    """Scan for a complete JSON object starting at *start*.
+
+    Returns ``(end, complete)`` where *end* is one-past the closing
+    brace (or ``len(text)`` if unclosed), and *complete* is a bool.
+    """
+    depth = 0
+    in_string = False
+    escape = False
+    for i in range(start, len(text)):
+        c = text[i]
+        if escape:
+            escape = False
+            continue
+        if c == "\\":
+            escape = True
+            continue
+        if c == '"':
+            in_string = not in_string
+            continue
+        if in_string:
+            continue
+        if c == "{":
+            depth += 1
+        elif c == "}":
+            depth -= 1
+            if depth == 0:
+                return i + 1, True
+    return len(text), False
+
+
+def _parse_tool_call_json(json_str: str, complete: bool):
+    """Extract *name* and *arguments* from a tool-call JSON string.
+
+    Returns ``(name, args, valid)``.
+    """
+    name_match = re.search(r'"name"\s*:\s*"([^"]*)"', json_str)
+    if not name_match:
+        return None, "", False
+    name = name_match.group(1)
+
+    args_match = re.search(r'"arguments"\s*:\s*(.*)', json_str, re.DOTALL)
+    if not args_match:
+        return name, "", True
+
+    raw = args_match.group(1).rstrip()
+    if complete and raw.endswith("}"):
+        raw = raw[:-1].rstrip()
+    if raw.startswith("{"):
+        inner = raw[1:].rstrip()
+        if inner.endswith("}"):
+            inner = inner[:-1].rstrip()
+        raw = inner
+    return name, raw, True
+
+
+def _find_tool_calls(text: str, start_pos: int = 0):
+    """Find all complete ``{...}`` tool-call objects in *text*.
+
+    Returns a list of dicts with keys *start*, *end*, *name*, *args*,
+    *complete*.
+    """
+    results = []
+    pos = start_pos
+
+    while True:
+        brace = text.find("{", pos)
+        if brace == -1:
+            break
+
+        end, complete = _scan_json(text, brace)
+        if not complete:
+            break
+
+        json_str = text[brace:end]
+        if not _TOOL_CALL_HEAD_RE.search(json_str):
+            pos = end
+            continue
+
+        name, args, valid = _parse_tool_call_json(json_str, complete=True)
+        if not valid or name is None:
+            pos = end
+            continue
+
+        results.append(
+            {
+                "start": brace,
+                "end": end,
+                "name": name,
+                "args": args,
+                "complete": True,
+            }
+        )
+        pos = end
+
+    return results
+
+
+def _find_partial_tool_call(text: str, start_pos: int = 0):
+    """Find one incomplete (still-generating) tool-call JSON object."""
+    brace = text.find("{", start_pos)
+    if brace == -1:
+        return None
+
+    json_str = text[brace:]
+    if not _TOOL_CALL_HEAD_RE.search(json_str):
+        return None
+
+    name, args, valid = _parse_tool_call_json(json_str, complete=False)
+    if not valid or name is None:
+        return None
+
+    return {
+        "start": brace,
+        "name": name,
+        "args": args,
+        "complete": False,
+    }
+
+
+@ToolParserFactory.register("simple_json")
+class SimpleJsonToolParser(BaseToolParser):
+    """Parser for models that output tool calls as plain JSON objects.
+
+    Detects ``{"name": "<func>", "arguments": {...}}`` anywhere in the
+    generated text.  Handles single and (non-overlapping) multiple tool
+    calls.  Text preceding the first tool call is emitted as plain
+    ``content`` deltas.
+    """
+
+    def __init__(self, tools=None, tool_choice="auto"):
+        super().__init__(tools, tool_choice)
+        self._emitted_content_len = 0
+        self._tc_state: List[Dict] = []
+        self._has_tool_calls = False
+
+    # -------------------------------------------------------------- feed
+
+    def feed(
+        self,
+        body: str,
+        current_token_ids: Optional[List[int]] = None,
+        delta_token_ids: Optional[List[int]] = None,
+    ) -> List[Dict]:
+        deltas: List[Dict] = []
+
+        completed = _find_tool_calls(body)
+
+        if not completed:
+            partial = _find_partial_tool_call(body)
+            if not partial:
+                return self._emit_plain_content(body, deltas)
+            all_tcs = [partial]
+        else:
+            all_tcs = completed
+            partial = _find_partial_tool_call(body, completed[-1]["end"])
+            if partial:
+                all_tcs = completed + [partial]
+
+        first_start = all_tcs[0]["start"]
+        if first_start > self._emitted_content_len:
+            content = body[self._emitted_content_len : first_start]
+            self._emitted_content_len = first_start
+            if content:
+                deltas.append({"content": content})
+
+        for i, tc in enumerate(all_tcs):
+            if i >= len(self._tc_state):
+                self._tc_state.append(
+                    {
+                        "id": f"call_{uuid.uuid4().hex[:12]}",
+                        "name_emitted": False,
+                        "args_emitted_len": 0,
+                    }
+                )
+                self._has_tool_calls = True
+            st = self._tc_state[i]
+
+            if not st["name_emitted"]:
+                st["name_emitted"] = True
+                deltas.append(
+                    {
+                        "tool_calls": [
+                            {
+                                "index": i,
+                                "id": st["id"],
+                                "type": "function",
+                                "function": {"name": tc["name"], "arguments": ""},
+                            }
+                        ]
+                    }
+                )
+
+            new_args = tc["args"]
+            if len(new_args) > st["args_emitted_len"]:
+                diff = new_args[st["args_emitted_len"] :]
+                st["args_emitted_len"] = len(new_args)
+                deltas.append(
+                    {
+                        "tool_calls": [
+                            {
+                                "index": i,
+                                "function": {"arguments": diff},
+                            }
+                        ]
+                    }
+                )
+
+        return deltas
+
+    def _emit_plain_content(self, body: str, deltas: List[Dict]) -> List[Dict]:
+        new_content = body[self._emitted_content_len :]
+        if new_content:
+            self._emitted_content_len = len(body)
+            deltas.append({"content": new_content})
+        return deltas
+
+    # -------------------------------------------------------- complete
+
+    def parse_complete(self, body: str) -> Optional[Dict]:
+        completed = _find_tool_calls(body)
+        if not completed:
+            return None
+
+        content = body[: completed[0]["start"]].strip() or None
+        tool_calls = []
+        for i, tc in enumerate(completed):
+            tool_calls.append(
+                {
+                    "id": f"call_{uuid.uuid4().hex[:12]}",
+                    "type": "function",
+                    "function": {
+                        "name": tc["name"],
+                        "arguments": tc["args"],
+                    },
+                }
+            )
+        return {"content": content, "tool_calls": tool_calls}
+
+    @property
+    def has_tool_calls(self) -> bool:
+        return self._has_tool_calls

astrai/inference/core/__init__.py

@@ -2,8 +2,12 @@
 
 from astrai.inference.core.cache import (
     Allocator,
+    CacheView,
+    ContiguousCache,
+    ContiguousCacheView,
     KVCache,
-    KvcacheView,
+    PageCache,
+    PageCacheView,
     PagePool,
     PrefixCache,
     Storage,
@@ -16,8 +20,12 @@ from astrai.inference.core.task import STOP, Task, TaskManager, TaskStatus
 
 __all__ = [
     "Allocator",
+    "CacheView",
     "KVCache",
-    "KvcacheView",
+    "ContiguousCache",
+    "ContiguousCacheView",
+    "PageCache",
+    "PageCacheView",
     "PagePool",
     "PrefixCache",
     "Storage",

astrai/inference/core/cache.py

@@ -1,4 +1,5 @@
 import threading
+from abc import ABC, abstractmethod
 from collections import OrderedDict
 from typing import Callable, Dict, List, Optional, Tuple
 
@@ -42,7 +43,7 @@ class Allocator:
                 return idx
             return -1
 
-    def free(self, idx: int, keep_cached: bool = False) -> None:
+    def free(self, idx: int, keep_cached: bool = False):
         with self._lock:
             self._refs[idx] -= 1
             if self._refs[idx] == 0:
@@ -51,7 +52,7 @@ class Allocator:
                 else:
                     self._free_mask |= 1 << idx
 
-    def inc_ref(self, idx: int) -> None:
+    def inc_ref(self, idx: int):
         with self._lock:
             self._refs[idx] += 1
             self._lru.pop(idx, None)
@@ -60,8 +61,9 @@ class Allocator:
         with self._lock:
             return self._refs[idx]
 
-    def touch(self, idx: int) -> None:
+    def touch(self, idx: int):
         with self._lock:
+            if idx in self._lru:
                 self._lru.move_to_end(idx)
 
 
@@ -74,7 +76,7 @@ class PrefixCache:
         self._hash_to_page: Dict[int, int] = {}
         self._lock = threading.Lock()
 
-    def evict(self, idx: int) -> None:
+    def evict(self, idx: int):
         with self._lock:
             h = self._page_to_hash.pop(idx, None)
             if h is not None:
@@ -96,9 +98,7 @@ class PrefixCache:
                 hits.append(p)
             return hits
 
-    def record(
+    def record(self, page_idx: int, token_ids: List[int], logical_page_idx: int):
-        self, page_idx: int, token_ids: List[int], logical_page_idx: int
-    ) -> None:
         with self._lock:
             h = page_hash(token_ids, logical_page_idx, self._page_size)
             old_h = self._page_to_hash.pop(page_idx, None)
@@ -127,13 +127,13 @@ class PagePool:
     def alloc(self) -> int:
         return self._alloc.alloc()
 
-    def free(self, idx: int) -> None:
+    def free(self, idx: int):
         keep = self._prefix.has_page(idx)
         self._alloc.free(idx, keep_cached=keep)
         if not keep:
             self._prefix.evict(idx)
 
-    def inc_ref(self, idx: int) -> None:
+    def inc_ref(self, idx: int):
         self._alloc.inc_ref(idx)
 
     def lookup(self, token_ids: List[int]) -> List[int]:
@@ -142,9 +142,7 @@ class PagePool:
             self._alloc.touch(p)
         return hits
 
-    def record(
+    def record(self, page_idx: int, token_ids: List[int], logical_page_idx: int):
-        self, page_idx: int, token_ids: List[int], logical_page_idx: int
-    ) -> None:
         self._prefix.record(page_idx, token_ids, logical_page_idx)
 
 
@@ -157,7 +155,7 @@ class TaskTable:
         self._cached: Dict[str, int] = {}
         self._lock = threading.Lock()
 
-    def set(self, task_id: str, page_table: List[int], cached: int) -> None:
+    def set(self, task_id: str, page_table: List[int], cached: int):
         with self._lock:
             self._pages[task_id] = page_table
             self._cached[task_id] = cached
@@ -220,7 +218,7 @@ class Storage:
         start_pos: int,
         k: Tensor,
         v: Tensor,
-    ) -> None:
+    ):
         seq_len = k.size(1)
         if seq_len == 0:
             return
@@ -278,7 +276,42 @@ class Storage:
         return k, v
 
 
-class KvcacheView:
+class CacheView(ABC):
+    """Abstract view passed to attention layers for KV-cache I/O."""
+
+    @abstractmethod
+    def write(self, layer_id: int, k: Tensor, v: Tensor): ...
+
+    @abstractmethod
+    def gather(self, layer_id: int) -> Tuple[Tensor, Tensor]: ...
+
+
+class KVCache(ABC):
+    """Abstract KV-cache facade for scheduler/executor."""
+
+    @abstractmethod
+    def task_alloc(self, task_id: str, prompt_ids: List[int]) -> bool: ...
+
+    @abstractmethod
+    def task_free(self, task_id: str): ...
+
+    @abstractmethod
+    def task_extend(self, task_id: str, pos: int) -> bool: ...
+
+    @abstractmethod
+    def bind_tasks(
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> CacheView: ...
+
+    def task_cached(self, task_id: str) -> int:
+        return 0
+
+    def task_record_hashes(
+        self, task_id: str, prompt_ids: List[int], start_logical_page: int = 0
+    ): ...
+
+
+class PageCacheView(CacheView):
     """Bundles Storage + page_table + total_len for attention layers."""
 
     def __init__(self, storage: Storage, page_table: Tensor, total_len: int = 0):
@@ -286,7 +319,7 @@ class KvcacheView:
         self._page_table = page_table
         self._total_len = total_len
 
-    def write(self, layer_id: int, k: Tensor, v: Tensor) -> None:
+    def write(self, layer_id: int, k: Tensor, v: Tensor):
         start_pos = self._total_len - k.size(1)
         self._storage.write(layer_id, self._page_table, start_pos, k, v)
 
@@ -294,8 +327,8 @@ class KvcacheView:
         return self._storage.gather(layer_id, self._page_table, self._total_len)
 
 
-class KVCache:
+class PageCache(KVCache):
-    """Facade: page management + KV-cache I/O for continuous batching."""
+    """Paged KV-cache with prefix sharing."""
 
     def __init__(
         self,
@@ -339,7 +372,7 @@ class KVCache:
         self._table.set(task_id, hits + new_pages, cached)
         return True
 
-    def task_free(self, task_id: str) -> None:
+    def task_free(self, task_id: str):
         page_table, _ = self._table.pop(task_id)
         for idx in page_table:
             self._pool.free(idx)
@@ -359,14 +392,108 @@ class KVCache:
 
     def task_record_hashes(
         self, task_id: str, prompt_ids: List[int], start_logical_page: int = 0
-    ) -> None:
+    ):
         page_table = self._table.get(task_id)
         full_pages = len(prompt_ids) // self.page_size
         for i in range(start_logical_page, full_pages):
             self._pool.record(page_table[i], prompt_ids, i)
 
-    def make_table_tensor(self, task_ids: List[str], device: torch.device) -> Tensor:
+    def bind_tasks(
-        return self._table.table_tensor(task_ids, device)
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> PageCacheView:
+        page_table = self._table.table_tensor(task_ids, device)
+        return PageCacheView(self._storage, page_table, total_len)
 
-    def bind(self, page_table: Tensor, total_len: int = 0) -> KvcacheView:
+
-        return KvcacheView(self._storage, page_table, total_len)
+class ContiguousCacheView(CacheView):
+    """Contiguous KV-cache view for attention layers."""
+
+    def __init__(
+        self, cache: "ContiguousCache", batch_indices: Tensor, total_len: int = 0
+    ):
+        self._cache = cache
+        self._batch_indices = batch_indices
+        self._total_len = total_len
+
+    def write(self, layer_id: int, k: Tensor, v: Tensor):
+        seq_len = k.size(1)
+        start_pos = self._total_len - seq_len
+        indices = self._batch_indices
+        self._cache.k[layer_id, indices, start_pos : start_pos + seq_len] = k
+        self._cache.v[layer_id, indices, start_pos : start_pos + seq_len] = v
+        new_len = start_pos + seq_len
+        for s in indices.tolist():
+            cur = self._cache._slot_len.get(s, 0)
+            if new_len > cur:
+                self._cache._slot_len[s] = new_len
+
+    def gather(self, layer_id: int) -> Tuple[Tensor, Tensor]:
+        max_len = max(
+            self._cache._slot_len.get(int(s), 0) for s in self._batch_indices.tolist()
+        )
+        indices = self._batch_indices
+        k = self._cache.k[layer_id, indices, :max_len]
+        v = self._cache.v[layer_id, indices, :max_len]
+        return k, v
+
+
+class ContiguousCache(KVCache):
+    """Contiguous per-slot KV cache (default implementation)."""
+
+    def __init__(
+        self,
+        n_layers: int,
+        max_batch_size: int,
+        max_seq_len: int,
+        n_kv_heads: int,
+        head_dim: int,
+        device: torch.device,
+        dtype: torch.dtype,
+    ):
+        self.max_seq_len = max_seq_len
+        self.k = torch.zeros(
+            n_layers,
+            max_batch_size,
+            max_seq_len,
+            n_kv_heads,
+            head_dim,
+            device=device,
+            dtype=dtype,
+        )
+        self.v = torch.zeros(
+            n_layers,
+            max_batch_size,
+            max_seq_len,
+            n_kv_heads,
+            head_dim,
+            device=device,
+            dtype=dtype,
+        )
+        self._slot_len: Dict[int, int] = {}
+        self._task_slot: Dict[str, int] = {}
+        self._free_slots = list(range(max_batch_size))
+        self._device = device
+
+    def task_alloc(self, task_id: str, prompt_ids: List[int]) -> bool:
+        if not self._free_slots:
+            return False
+        slot = self._free_slots.pop(0)
+        self._task_slot[task_id] = slot
+        self._slot_len[slot] = 0
+        return True
+
+    def task_free(self, task_id: str):
+        slot = self._task_slot.pop(task_id, None)
+        if slot is not None:
+            self._slot_len.pop(slot, None)
+            self._free_slots.append(slot)
+
+    def task_extend(self, task_id: str, pos: int) -> bool:
+        return pos < self.max_seq_len
+
+    def bind_tasks(
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> ContiguousCacheView:
+        slots = [self._task_slot[tid] for tid in task_ids]
+        batch_indices = torch.tensor(slots, dtype=torch.long, device=device)
+        return ContiguousCacheView(self, batch_indices, total_len)

astrai/inference/core/executor.py

@@ -19,19 +19,17 @@ class Executor:
         self,
         model: AutoModel,
         tokenizer: AutoTokenizer,
-        page_cache: KVCache,
+        kv_cache: KVCache,
         device: Optional[str] = None,
         dtype: Optional[torch.dtype] = None,
     ):
         self.model = model
         self.tokenizer = tokenizer
-        self.page_cache = page_cache
+        self.kv_cache = kv_cache
         self.device = device or next(model.parameters()).device
         self.dtype = dtype or next(model.parameters()).dtype
 
-    def execute_prefill(
+    def execute_prefill(self, tasks: List[Task], prompt_len: int, start_pos: int = 0):
-        self, tasks: List[Task], prompt_len: int, start_pos: int = 0
-    ) -> None:
         if start_pos >= prompt_len:
             return
 
@@ -45,7 +43,6 @@ class Executor:
         )
 
         task_ids = [t.task_id for t in tasks]
-        page_tables = self.page_cache.make_table_tensor(task_ids, self.device)
 
         with torch.inference_mode():
             self.model(
@@ -55,7 +52,7 @@ class Executor:
                 )
                 .unsqueeze(0)
                 .expand(batch_sz, -1),
-                paged_cache=self.page_cache.bind(page_tables, total_len=prompt_len),
+                paged_cache=self.kv_cache.bind_tasks(task_ids, prompt_len, self.device),
             )
 
     def execute_decode(self, tasks: List[Task]) -> List[int]:
@@ -74,7 +71,6 @@ class Executor:
         total_len = position_ids.max().item() + 1
 
         task_ids = [t.task_id for t in tasks]
-        page_tables = self.page_cache.make_table_tensor(task_ids, self.device)
 
         temperatures = torch.tensor([t.temperature for t in tasks], device=self.device)
         top_ks = torch.tensor([t.top_k for t in tasks], device=self.device)
@@ -83,7 +79,7 @@ class Executor:
         with torch.inference_mode():
             outputs = self.model(
                 input_ids.unsqueeze(1),
-                paged_cache=self.page_cache.bind(page_tables, total_len=total_len),
+                paged_cache=self.kv_cache.bind_tasks(task_ids, total_len, self.device),
                 position_ids=position_ids.unsqueeze(1),
             )
             logits = outputs["logits"][:, -1, :]

astrai/inference/core/scheduler.py

@@ -4,7 +4,7 @@ from typing import Any, Dict, List, Optional, Tuple
 
 import torch
 
-from astrai.inference.core.cache import KVCache
+from astrai.inference.core.cache import ContiguousCache, KVCache
 from astrai.inference.core.executor import Executor
 from astrai.inference.core.task import STOP, Task, TaskManager, TaskStatus
 from astrai.model.automodel import AutoModel
@@ -14,7 +14,7 @@ logger = logging.getLogger(__name__)
 
 
 class InferenceScheduler:
-    """Four-phase continuous batching loop: cleanup -> refill -> prefill -> decode."""
+    """Continuous batching loop: cleanup -> refill -> prefill -> decode (all groups)."""
 
     def __init__(
         self,
@@ -23,9 +23,9 @@ class InferenceScheduler:
         max_batch_size: int = 16,
         max_seq_len: Optional[int] = None,
         max_prompt_len: int = 2048,
-        page_size: int = 64,
         device: Optional[str] = None,
         dtype: Optional[torch.dtype] = None,
+        cache: Optional[KVCache] = None,
     ):
         config = model.config
 
@@ -41,16 +41,17 @@ class InferenceScheduler:
         self.device = device or next(model.parameters()).device
         self.dtype = dtype or next(model.parameters()).dtype
 
-        n_pages = (
+        head_dim = config.dim // config.n_heads
-            max_batch_size * (self.max_seq_len + page_size) + page_size - 1
-        ) // page_size
 
-        self._page_cache = KVCache(
+        if cache is not None:
+            self._cache = cache
+        else:
+            self._cache = ContiguousCache(
                 config.n_layers,
-            n_pages,
+                max_batch_size,
-            page_size,
+                self.max_seq_len,
                 config.n_kv_heads,
-            config.dim // config.n_heads,
+                head_dim,
                 self.device,
                 self.dtype,
             )
@@ -65,30 +66,32 @@ class InferenceScheduler:
         self._executor = Executor(
             model=model,
             tokenizer=tokenizer,
-            page_cache=self._page_cache,
+            kv_cache=self._cache,
             device=self.device,
             dtype=self.dtype,
         )
 
-        self._running = False
+        self._stop_event = threading.Event()
+        self._loop_thread: Optional[threading.Thread] = None
 
     def add_task(self, prompt: str, **kwargs) -> str:
         return self._task_mgr.add_task(prompt, **kwargs)
 
-    def remove_task(self, task_id: str) -> None:
+    def remove_task(self, task_id: str):
         for task in self._task_mgr.remove_task(task_id):
-            self._page_cache.task_free(task.task_id)
+            self._cache.task_free(task.task_id)
 
     def get_stats(self) -> Dict[str, Any]:
         return self._task_mgr.get_stats()
 
-    def _run_generation_loop(self) -> None:
+    def _run_generation_loop(self):
         stop_ids = self._task_mgr.tokenizer.stop_ids
+        cache = self._cache
         try:
-            while self._running:
+            while not self._stop_event.is_set():
                 finished = self._task_mgr.remove_finished_tasks(stop_ids)
                 for task in finished:
-                    self._page_cache.task_free(task.task_id)
+                    cache.task_free(task.task_id)
 
                 active = self._task_mgr.get_active_tasks()
                 available = self._task_mgr.max_batch_size - len(active)
@@ -96,7 +99,7 @@ class InferenceScheduler:
                     candidates = self._task_mgr.pull_candidates(available)
                     failed = []
                     for task in candidates:
-                        if self._page_cache.task_alloc(task.task_id, task.prompt_ids):
+                        if cache.task_alloc(task.task_id, task.prompt_ids):
                             self._task_mgr.activate(task)
                         else:
                             failed.append(task)
@@ -108,7 +111,10 @@ class InferenceScheduler:
                     continue
 
                 to_prefill = [
-                    t for t in self._task_mgr.get_active_tasks() if t.output_tokens == 0
+                    t
+                    for t in self._task_mgr.get_active_tasks()
+                    if t.output_tokens == 0
+                    and cache.task_cached(t.task_id) < len(t.prompt_ids)
                 ]
                 if to_prefill:
                     for t in to_prefill:
@@ -118,36 +124,34 @@ class InferenceScheduler:
                     for t in to_prefill:
                         key = (
                             len(t.prompt_ids),
-                            self._page_cache.task_cached(t.task_id),
+                            cache.task_cached(t.task_id),
                         )
                         groups.setdefault(key, []).append(t)
 
                     for (prompt_len, start_pos), group in groups.items():
                         self._executor.execute_prefill(group, prompt_len, start_pos)
-                        start_logical_page = start_pos // self._page_cache.page_size
+                        start_logical_page = start_pos // getattr(
+                            cache, "page_size", 64
+                        )
                         for t in group:
-                            self._page_cache.task_record_hashes(
+                            cache.task_record_hashes(
-                                t.task_id,
+                                t.task_id, t.prompt_ids, start_logical_page
-                                t.prompt_ids,
-                                start_logical_page=start_logical_page,
                             )
 
                 pos_groups: Dict[int, List[Task]] = {}
                 for t in self._task_mgr.get_active_tasks():
                     pos_groups.setdefault(t.next_pos, []).append(t)
 
-                if pos_groups:
+                for next_pos in sorted(pos_groups.keys()):
-                    best_key = max(pos_groups, key=lambda k: len(pos_groups[k]))
+                    group = sorted(pos_groups[next_pos], key=lambda t: t.task_id)
-                    group = sorted(pos_groups[best_key], key=lambda t: t.task_id)
 
                     valid: List[Task] = []
                     for t in group:
-                        if self._page_cache.task_extend(t.task_id, t.next_pos):
+                        if cache.task_extend(t.task_id, t.next_pos):
                             valid.append(t)
                         else:
                             t.status = TaskStatus.ABORTED
-                            if t.stream_callback:
+                            self._task_mgr.invoke_callback(t.task_id, STOP)
-                                t.stream_callback(STOP)
 
                     if valid:
                         next_tokens = self._executor.execute_decode(valid)
@@ -155,41 +159,44 @@ class InferenceScheduler:
                         for t, ntok in zip(valid, next_tokens):
                             t.output_ids.append(ntok)
                             t.output_tokens += 1
-                            pos = t.input_tokens + t.output_tokens
+                            self._task_mgr.invoke_callback(
-                            self._page_cache.task_extend(t.task_id, pos)
+                                t.task_id,
-                            if t.stream_callback:
+                                self._task_mgr.tokenizer.decode([ntok]),
-                                t.stream_callback(
-                                    self._task_mgr.tokenizer.decode([ntok])
                             )
 
                         for t in valid:
                             if t.is_finished(stop_ids):
-                                if t.stream_callback:
+                                self._task_mgr.invoke_callback(t.task_id, STOP)
-                                    t.stream_callback(STOP)
 
         except Exception as e:
+            self._stop_event.set()
             logger.error(f"Scheduler loop crashed: {e}", exc_info=True)
             for task in self._task_mgr.get_active_tasks():
-                if task.stream_callback:
+                self._task_mgr.invoke_callback(task.task_id, STOP)
-                    task.stream_callback(STOP)
+                cache.task_free(task.task_id)
-                self._page_cache.task_free(task.task_id)
+            for task in self._task_mgr.get_waiting_tasks():
+                self._task_mgr.invoke_callback(task.task_id, STOP)
             self._task_mgr.clear_queues()
-            raise
 
-    def start(self) -> None:
+    def start(self):
-        if not self._running:
+        if self._loop_thread is not None and self._loop_thread.is_alive():
-            self._running = True
+            return
+        self._stop_event.clear()
         t = threading.Thread(target=self._run_generation_loop, daemon=True)
         t.start()
         self._loop_thread = t
 
-    def stop(self) -> None:
+    def stop(self):
-        self._running = False
+        self._stop_event.set()
         self._task_mgr.wake()
-        if hasattr(self, "_loop_thread"):
+        if self._loop_thread is not None:
             self._loop_thread.join(timeout=2.0)
+        self._loop_thread = None
         for task in self._task_mgr.get_active_tasks():
-            self._page_cache.task_free(task.task_id)
+            self._task_mgr.invoke_callback(task.task_id, STOP)
+            self._cache.task_free(task.task_id)
+        for task in self._task_mgr.get_waiting_tasks():
+            self._task_mgr.invoke_callback(task.task_id, STOP)
         self._task_mgr.clear_queues()
         if torch.cuda.is_available():
             torch.cuda.empty_cache()

astrai/inference/core/task.py

@@ -33,7 +33,6 @@ class Task:
         temperature: float = 1.0,
         top_p: float = 1.0,
         top_k: int = 50,
-        stream_callback: Optional[Callable[[str], None]] = None,
     ):
         self.task_id = task_id
         self.prompt_ids = prompt_ids
@@ -48,7 +47,6 @@ class Task:
         self.output_tokens: int = 0
         self.arrival_time = time.time()
         self.finish_time: Optional[float] = None
-        self.stream_callback = stream_callback
 
     @property
     def next_pos(self) -> int:
@@ -79,6 +77,7 @@ class TaskManager:
 
         self.waiting_queue: Deque[Task] = deque()
         self.active_tasks: List[Task] = []
+        self._callbacks: Dict[str, Callable[[str], None]] = {}
 
         self._task_event = threading.Event()
         self._lock = threading.Lock()
@@ -117,12 +116,13 @@ class TaskManager:
             temperature=temperature,
             top_p=top_p,
             top_k=top_k,
-            stream_callback=stream_callback,
         )
 
         with self._lock:
             self.waiting_queue.append(task)
             self._total_tasks += 1
+            if stream_callback:
+                self._callbacks[task_id] = stream_callback
 
         self._task_event.set()
         return task_id
@@ -134,8 +134,14 @@ class TaskManager:
                 t for t in self.waiting_queue if t.task_id != task_id
             )
             self.active_tasks = [t for t in self.active_tasks if t.task_id != task_id]
+            self._callbacks.pop(task_id, None)
         return removed_active
 
+    def invoke_callback(self, task_id: str, token: str):
+        cb = self._callbacks.get(task_id)
+        if cb:
+            cb(token)
+
     def get_stats(self) -> Dict[str, Any]:
         return {
             "total_tasks": self._total_tasks,
@@ -172,12 +178,12 @@ class TaskManager:
                 to_add.append(self.waiting_queue.popleft())
         return to_add
 
-    def activate(self, task: Task) -> None:
+    def activate(self, task: Task):
         task.status = TaskStatus.RUNNING
         with self._lock:
             self.active_tasks.append(task)
 
-    def return_to_waiting(self, tasks: List[Task]) -> None:
+    def return_to_waiting(self, tasks: List[Task]):
         with self._lock:
             for task in reversed(tasks):
                 self.waiting_queue.appendleft(task)
@@ -185,7 +191,10 @@ class TaskManager:
     def has_work(self) -> bool:
         return bool(self.active_tasks or self.waiting_queue)
 
-    def wait_for_tasks(self, timeout: float = 1.0) -> None:
+    def wait_for_tasks(self, timeout: float = 1.0):
+        with self._lock:
+            if self.waiting_queue or self.active_tasks:
+                return
             self._task_event.clear()
         self._task_event.wait(timeout=timeout)
 
@@ -193,10 +202,15 @@ class TaskManager:
         with self._lock:
             return list(self.active_tasks)
 
-    def clear_queues(self) -> None:
+    def get_waiting_tasks(self) -> List[Task]:
+        with self._lock:
+            return list(self.waiting_queue)
+
+    def clear_queues(self):
         with self._lock:
             self.waiting_queue.clear()
             self.active_tasks.clear()
+            self._callbacks.clear()
 
-    def wake(self) -> None:
+    def wake(self):
         self._task_event.set()

astrai/inference/engine.py

@@ -8,22 +8,12 @@ from typing import Any, AsyncGenerator, Dict, Generator, List, Optional, Tuple,
 import torch
 import torch.nn as nn
 
+from astrai.inference.core.cache import KVCache
 from astrai.inference.core.scheduler import InferenceScheduler
 from astrai.inference.core.task import STOP
 from astrai.tokenize import AutoTokenizer
 
 
-def _validate_sampling_params(
-    top_k: int, top_p: float, temperature: float, max_tokens: Optional[int] = None
-):
-    if not (isinstance(top_k, int) and top_k >= 0):
-        raise ValueError("top_k must be a non-negative integer")
-    if not (0.0 <= top_p <= 1.0):
-        raise ValueError("top_p must be a float between 0.0 and 1.0")
-    if not (isinstance(temperature, (int, float)) and temperature >= 0):
-        raise ValueError("temperature must be a non-negative number")
-
-
 class GenerateResult:
     """Thread-safe token accumulator for streaming and non-streaming modes."""
 
@@ -59,7 +49,7 @@ class GenerateResult:
     def wait(self, timeout: Optional[float] = None) -> bool:
         return self._event.wait(timeout=timeout)
 
-    def wait_completion(self, timeout: float = 300.0) -> None:
+    def wait_completion(self, timeout: float = 300.0):
         with self._cond:
             if not self._cond.wait_for(
                 lambda: self._completed >= self._total, timeout=timeout
@@ -86,7 +76,12 @@ class GenerationRequest:
         max_tokens: Optional[int] = None,
         stream: bool = False,
     ):
-        _validate_sampling_params(top_k, top_p, temperature, max_tokens)
+        if not (isinstance(top_k, int) and top_k >= 0):
+            raise ValueError("top_k must be a non-negative integer")
+        if not (0.0 <= top_p <= 1.0):
+            raise ValueError("top_p must be a float between 0.0 and 1.0")
+        if not (isinstance(temperature, (int, float)) and temperature > 0):
+            raise ValueError("temperature must be a positive number")
 
         self.messages = messages
         self.top_k = top_k
@@ -107,6 +102,7 @@ class InferenceEngine:
         max_seq_len: Optional[int] = None,
         max_prompt_len: int = 2048,
         page_size: int = 128,
+        cache: Optional[KVCache] = None,
     ):
         self.model = model
         self.tokenizer = tokenizer
@@ -116,7 +112,7 @@ class InferenceEngine:
             max_batch_size=max_batch_size,
             max_seq_len=max_seq_len,
             max_prompt_len=max_prompt_len,
-            page_size=page_size,
+            cache=cache,
         )
 
         self.scheduler.start()
@@ -137,7 +133,6 @@ class InferenceEngine:
         top_p: float = 1.0,
         top_k: int = 50,
     ) -> Union[Generator, str, List[str]]:
-        _validate_sampling_params(top_k, top_p, temperature, max_tokens)
         is_batch = isinstance(prompt, list)
         prompts = prompt if is_batch else [prompt]
 
@@ -158,7 +153,6 @@ class InferenceEngine:
         top_p: float = 1.0,
         top_k: int = 50,
     ) -> AsyncGenerator[str, None]:
-        _validate_sampling_params(top_k, top_p, temperature, max_tokens)
         sync_gen = self._generate_streaming(
             [prompt], False, max_tokens, temperature, top_p, top_k
         )
@@ -289,7 +283,7 @@ class InferenceEngine:
     def get_stats(self) -> Dict[str, Any]:
         return self.scheduler.get_stats()
 
-    def shutdown(self) -> None:
+    def shutdown(self):
         self.scheduler.stop()
         if torch.cuda.is_available():
             torch.cuda.empty_cache()

astrai/inference/sample.py

@@ -29,6 +29,7 @@ class BaseSamplingStrategy(ABC):
         Returns:
             Transformed logits tensor.
         """
+        raise NotImplementedError
 
 
 class TemperatureStrategy(BaseSamplingStrategy):
@@ -41,13 +42,15 @@ class TemperatureStrategy(BaseSamplingStrategy):
     def __init__(self, temperature: Union[float, Tensor] = 1.0):
         self.temperature = temperature
 
-    def apply(self, logits, filter_value=-float("inf")):
+    def apply(self, logits: Tensor, filter_value: float = -float("inf")) -> Tensor:
         t = self.temperature
         if isinstance(t, Tensor):
+            t = t.to(logits.device, non_blocking=True).view(-1, 1)
+            t = torch.clamp(t, min=1e-8)
             if (t != 1.0).any():
-                logits = logits / t.to(logits.device, non_blocking=True).view(-1, 1)
-        elif t != 1.0:
                 logits = logits / t
+        elif t != 1.0:
+            logits = logits / max(t, 1e-8)
         return logits
 
 
@@ -61,7 +64,7 @@ class TopKStrategy(BaseSamplingStrategy):
     def __init__(self, top_k: Union[int, Tensor] = 0):
         self.top_k = top_k
 
-    def apply(self, logits, filter_value=-float("inf")):
+    def apply(self, logits: Tensor, filter_value: float = -float("inf")) -> Tensor:
         tk = self.top_k
         if isinstance(tk, Tensor):
             tk = tk.to(logits.device, non_blocking=True).long().clamp(min=0)
@@ -98,7 +101,9 @@ class TopPStrategy(BaseSamplingStrategy):
     def __init__(self, top_p: Union[float, Tensor] = 1.0):
         self.top_p = top_p
 
-    def _apply(self, logits, top_p, filter_value):
+    def _apply(
+        self, logits: Tensor, top_p: Union[float, Tensor], filter_value: float
+    ) -> Tensor:
         sorted_logits, sorted_indices = torch.sort(logits, descending=True, dim=-1)
         cum_probs = torch.cumsum(torch.softmax(sorted_logits, dim=-1), dim=-1)
         remove = cum_probs > top_p
@@ -109,7 +114,7 @@ class TopPStrategy(BaseSamplingStrategy):
         logits[mask] = filter_value
         return logits
 
-    def apply(self, logits, filter_value=-float("inf")):
+    def apply(self, logits: Tensor, filter_value: float = -float("inf")) -> Tensor:
         tp = self.top_p
         if isinstance(tp, Tensor):
             tp = tp.to(logits.device, non_blocking=True)
@@ -140,7 +145,7 @@ class SamplingPipeline(BaseSamplingStrategy):
     def __init__(self, strategies: List[BaseSamplingStrategy]):
         self.strategies = strategies
 
-    def apply(self, logits, filter_value=-float("inf")):
+    def apply(self, logits: Tensor, filter_value: float = -float("inf")) -> Tensor:
         for strategy in self.strategies:
             logits = strategy.apply(logits, filter_value)
         return logits

astrai/model/__init__.py

@@ -2,6 +2,13 @@ from astrai.model.automodel import AutoModel
 from astrai.model.components.attention import GQA
 from astrai.model.components.decoder_block import DecoderBlock
 from astrai.model.components.linear import Linear
+from astrai.model.components.lora import (
+    LoRAConfig,
+    inject_lora,
+    load_lora,
+    merge_lora,
+    save_lora,
+)
 from astrai.model.components.mlp import MLP
 from astrai.model.components.norm import RMSNorm
 from astrai.model.encoder import EmbeddingEncoder
@@ -18,4 +25,10 @@ __all__ = [
     "AutoRegressiveLM",
     "EmbeddingEncoder",
     "AutoModel",
+    # LoRA
+    "LoRAConfig",
+    "inject_lora",
+    "merge_lora",
+    "save_lora",
+    "load_lora",
 ]

astrai/model/automodel.py

@@ -2,21 +2,24 @@
 AutoModel base class for model loading and saving.
 """
 
-import json
 from contextlib import contextmanager
 from pathlib import Path
 from typing import Self, Union
 
-import safetensors.torch as st
 import torch.nn as nn
 
 from astrai.config.model_config import BaseModelConfig, ConfigFactory
 from astrai.factory import BaseFactory
+from astrai.serialization import load_model_config, load_model_weights, save_model
 
 
 @contextmanager
 def _disable_random_init(enable: bool = True):
-    init_functions = [
+    if not enable:
+        yield
+        return
+
+    names = (
         "xavier_normal_",
         "xavier_uniform_",
         "kaiming_normal_",
@@ -26,18 +29,15 @@ def _disable_random_init(enable: bool = True):
         "constant_",
         "normal_",
         "uniform_",
-    ]
+    )
-    original_funcs = {}
+    orig = {n: getattr(nn.init, n) for n in names if hasattr(nn.init, n)}
-    for name in init_functions:
+    for n in orig:
-        if enable and hasattr(nn.init, name):
+        setattr(nn.init, n, lambda *a, **kw: None)
-            original_funcs[name] = getattr(nn.init, name)
-            setattr(nn.init, name, lambda *args, **kwargs: None)
     try:
         yield
     finally:
-        if enable:
+        for n, fn in orig.items():
-            for name, orig_func in original_funcs.items():
+            setattr(nn.init, n, fn)
-                setattr(nn.init, name, orig_func)
 
 
 class AutoModel(BaseFactory["AutoModel"], nn.Module):
@@ -60,25 +60,22 @@ class AutoModel(BaseFactory["AutoModel"], nn.Module):
 
         model_path = Path(path)
 
-        # Load config
         config_path = model_path / "config.json"
-        if config_path.exists():
+        if not config_path.exists():
-            with open(config_path, "r") as f:
+            raise FileNotFoundError(f"Config file not found: {config_path}")
-                raw = json.load(f)
+
+        raw = load_model_config(str(model_path))
         config = ConfigFactory.load(raw)
         model_type = config.model_type or "autoregressive_lm"
-        else:
-            raise FileNotFoundError(f"Config file not found: {config_path}")
 
         actual_cls = AutoModel.get_component_class(model_type)
 
         with _disable_random_init(enable=disable_random_init):
             model = actual_cls(config)
 
-        # Load weights
         weights_path = model_path / "model.safetensors"
         if weights_path.exists():
-            state_dict = st.load_file(str(weights_path))
+            state_dict = load_model_weights(str(model_path))
             model.load_state_dict(state_dict, strict=strict)
 
         return model
@@ -86,15 +83,12 @@ class AutoModel(BaseFactory["AutoModel"], nn.Module):
     def save_pretrained(
         self,
         save_directory: Union[str, Path],
-    ) -> None:
+    ):
-        save_path = Path(save_directory)
+        save_model(
-        save_path.mkdir(parents=True, exist_ok=True)
+            config=self.config.to_dict(),
-
+            state_dict=self.state_dict(),
-        # Save config
+            save_directory=str(save_directory),
-        self.config.to_file(str(save_path / "config.json"))
+        )
-
-        # Save weights
-        st.save_file(self.state_dict(), str(save_path / "model.safetensors"))
 
     def to(self, *args, **kwargs) -> Self:
         """Move model to device/dtype."""

astrai/model/components/attention.py

@@ -6,7 +6,7 @@ import torch.nn.functional as F
 from torch import Tensor
 
 from astrai.factory import BaseFactory
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.components.linear import Linear
 from astrai.model.components.norm import RMSNorm
 from astrai.model.components.rope import apply_rotary_emb
@@ -24,9 +24,7 @@ def repeat_kv(x: Tensor, n_rep: int) -> Tensor:
 
 
 class AttnFactory(BaseFactory[nn.Module]):
-    @classmethod
+    pass
-    def create(cls, attn_type: str, **kwargs) -> nn.Module:
-        return super().create(attn_type, **kwargs)
 
 
 @AttnFactory.register("gqa")
@@ -40,6 +38,7 @@ class GQA(nn.Module):
         norm_eps: float,
         use_gated_attention: bool,
         layer_id: int,
+        n_layers: int = 1,
     ):
         super().__init__()
         assert dim % n_heads == 0
@@ -57,7 +56,7 @@ class GQA(nn.Module):
         self.q_proj = Linear(dim, n_heads * self.head_dim)
         self.k_proj = Linear(dim, n_kv_heads * self.head_dim)
         self.v_proj = Linear(dim, n_kv_heads * self.head_dim)
-        self.o_proj = Linear(dim, dim)
+        self.o_proj = Linear(dim, dim, init_std=0.02 / (2 * n_layers) ** 0.5)
 
         if self.use_qk_norm:
             self.q_norm = RMSNorm(self.head_dim, norm_eps)
@@ -76,7 +75,7 @@ class GQA(nn.Module):
         x: Tensor,
         rotary_emb: Tensor,
         attn_mask: Tensor = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         is_causal = attn_mask is None
 
@@ -123,6 +122,7 @@ class MLA(nn.Module):
         use_qk_norm: bool,
         use_gated_attention: bool,
         layer_id: int,
+        n_layers: int = 1,
     ):
         super().__init__()
         self.dim = dim
@@ -150,7 +150,9 @@ class MLA(nn.Module):
             n_kv_heads * (2 * self.head_dim),
         )
 
-        self.o_proj = Linear(dim, dim, bias=False)
+        self.o_proj = Linear(
+            dim, dim, bias=False, init_std=0.02 / (2 * n_layers) ** 0.5
+        )
 
         if use_gated_attention:
             self.gate = Linear(dim, dim, bias=False)
@@ -160,7 +162,7 @@ class MLA(nn.Module):
         x: Tensor,
         rotary_emb: Tensor,
         attn_mask: Tensor = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         bsz, seq_len, _ = x.size()
         is_causal = attn_mask is None

astrai/model/components/decoder_block.py

@@ -1,51 +1,31 @@
+from dataclasses import asdict
 from typing import Optional
 
 import torch.nn as nn
 from torch import Tensor
 
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.components.attention import AttnFactory
 from astrai.model.components.mlp import FFNFactory
 from astrai.model.components.norm import RMSNorm
 
 
 class DecoderBlock(nn.Module):
-    def __init__(
+    def __init__(self, config, layer_id: int):
-        self,
-        dim: int,
-        n_heads: int,
-        dim_ffn: int,
-        n_kv_heads: int,
-        norm_eps: float,
-        use_qk_norm: bool,
-        use_gated_attention: bool,
-        layer_id: int,
-        attn_type: str = "gqa",
-        ffn_type: str = "mlp",
-        **kwargs,
-    ):
         super().__init__()
-        self.attention = AttnFactory.create(
+        cfg = asdict(config)
-            attn_type,
+        cfg["down_init_std"] = 0.02 / (2 * config.n_layers) ** 0.5
-            dim=dim,
+        self.attention = AttnFactory.create(config.attn_type, **cfg, layer_id=layer_id)
-            n_heads=n_heads,
+        self.input_norm = RMSNorm(config.dim, config.norm_eps)
-            n_kv_heads=n_kv_heads,
+        self.post_attention_norm = RMSNorm(config.dim, config.norm_eps)
-            use_qk_norm=use_qk_norm,
+        self.mlp = FFNFactory.create(config.ffn_type, **cfg)
-            norm_eps=norm_eps,
-            use_gated_attention=use_gated_attention,
-            layer_id=layer_id,
-            **kwargs,
-        )
-        self.input_norm = RMSNorm(dim, norm_eps)
-        self.post_attention_norm = RMSNorm(dim, norm_eps)
-        self.mlp = FFNFactory.create(ffn_type, dim, dim_ffn, **kwargs)
 
     def forward(
         self,
         x: Tensor,
         rotary_emb: Tensor,
         attention_mask: Optional[Tensor] = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         attn_output = self.attention(
             self.input_norm(x),

astrai/model/components/embedding.py

@@ -1,3 +1,5 @@
+import math
+
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
@@ -5,12 +7,20 @@ from torch import Tensor
 
 
 class Embedding(nn.Module):
-    def __init__(self, vocab_size: int, embedding_dim: int):
+    def __init__(self, vocab_size: int, embedding_dim: int, neftune_alpha: float = 0.0):
         super().__init__()
         self.weight = nn.Parameter(torch.empty((vocab_size, embedding_dim)))
+        self.neftune_noise_alpha = neftune_alpha
+
+    def set_neftune_alpha(self, alpha: float):
+        self.neftune_noise_alpha = alpha
 
     def reset_parameters(self):
         nn.init.normal_(self.weight, mean=0.0, std=0.02)
 
     def forward(self, x: Tensor) -> Tensor:
-        return F.embedding(x, self.weight)
+        out = F.embedding(x, self.weight)
+        if self.training and self.neftune_noise_alpha > 0.0:
+            eps = self.neftune_noise_alpha / math.sqrt(out.size(1))
+            out = out + eps * torch.randn_like(out)
+        return out

astrai/model/components/linear.py

@@ -5,13 +5,16 @@ from torch import Tensor
 
 
 class Linear(nn.Module):
-    def __init__(self, in_dim: int, out_dim: int, bias: bool = False):
+    def __init__(
+        self, in_dim: int, out_dim: int, bias: bool = False, init_std: float = 0.02
+    ):
         super().__init__()
         self.weight = nn.Parameter(torch.empty((out_dim, in_dim)))
         self.bias = nn.Parameter(torch.zeros(out_dim)) if bias else None
+        self.init_std = init_std
 
     def reset_parameters(self):
-        nn.init.kaiming_uniform_(self.weight, a=5**0.5)
+        nn.init.normal_(self.weight, mean=0.0, std=self.init_std)
         if self.bias is not None:
             fan_in, _ = nn.init._calculate_fan_in_and_fan_out(self.weight)
             bound = 1 / (fan_in**0.5)

astrai/model/components/lora.py

@@ -0,0 +1,194 @@
+import logging
+from dataclasses import asdict, dataclass
+from pathlib import Path
+from typing import Optional, Set
+
+import torch
+import torch.nn as nn
+import torch.nn.functional as F
+
+from astrai.model.components.linear import Linear
+from astrai.serialization import (
+    load_json,
+    load_safetensors,
+    save_json,
+    save_safetensors,
+)
+
+logger = logging.getLogger(__name__)
+
+TARGET_MODULES_ATTN = {"q_proj", "k_proj", "v_proj", "o_proj"}
+TARGET_MODULES_FFN = {"up", "gate", "down"}
+
+
+@dataclass
+class LoRAConfig:
+    r: int = 16
+    alpha: int = 32
+    target_modules: tuple = ("q_proj", "v_proj")
+
+
+class LoRALinear(nn.Module):
+    def __init__(self, base: Linear, r: int = 16, alpha: int = 32):
+        super().__init__()
+        self.register_parameter("weight", base.weight)
+        self.weight.requires_grad_(False)
+        self.bias = base.bias
+        if self.bias is not None:
+            self.bias.requires_grad_(False)
+
+        self.r = r
+        self.scaling = alpha / r
+        self.lora_A = nn.Parameter(torch.randn(r, self.weight.shape[1]) / r)
+        self.lora_B = nn.Parameter(torch.zeros(self.weight.shape[0], r))
+        self._merged = False
+
+    def forward(self, x):
+        out = F.linear(x, self.weight, self.bias)
+        if not self._merged:
+            out += (F.linear(x, self.lora_A) @ self.lora_B.T) * self.scaling
+        return out
+
+    def merge(self):
+        if self._merged:
+            return
+        self.weight.data += (self.lora_B @ self.lora_A) * self.scaling
+        self._merged = True
+        del self.lora_A
+        del self.lora_B
+
+
+def _collect_lora_info(model: nn.Module) -> dict:
+    names = {}
+    for n, m in model.named_modules():
+        if isinstance(m, Linear):
+            _, _, child = n.rpartition(".")
+            names.setdefault(child, []).append(n)
+    return names
+
+
+def _get_lora_count(model: nn.Module) -> int:
+    return sum(1 for m in model.modules() if isinstance(m, LoRALinear))
+
+
+def inject_lora(
+    model: nn.Module,
+    r: int = 16,
+    alpha: int = 32,
+    target_modules: Optional[Set[str]] = None,
+) -> LoRAConfig:
+    if target_modules is None:
+        target_modules = TARGET_MODULES_ATTN
+
+    available = _collect_lora_info(model)
+    injected = 0
+
+    for name, module in list(model.named_modules()):
+        if not isinstance(module, Linear):
+            continue
+        parent_name, _, child_name = name.rpartition(".")
+        if child_name not in target_modules:
+            continue
+        parent = model.get_submodule(parent_name) if parent_name else model
+        setattr(parent, child_name, LoRALinear(module, r=r, alpha=alpha))
+        injected += 1
+
+    if injected == 0:
+        logger.warning(
+            "No LoRA layers injected. Available Linear child names: %s. "
+            "target_modules: %s. Check model type and target_modules.",
+            sorted(available),
+            sorted(target_modules),
+        )
+    else:
+        logger.info("LoRA injected: %d layers (r=%d, alpha=%d)", injected, r, alpha)
+
+    return LoRAConfig(r=r, alpha=alpha, target_modules=tuple(target_modules))
+
+
+def merge_lora(model: nn.Module):
+    n = 0
+    for module in model.modules():
+        if isinstance(module, LoRALinear):
+            module.merge()
+            n += 1
+    if n == 0:
+        logger.warning("No LoRA layers to merge.")
+    else:
+        logger.info("Merged %d LoRA layers", n)
+
+
+def save_lora(model: nn.Module, save_dir: str, config: LoRAConfig):
+    lora_sd = {
+        k: v
+        for k, v in model.state_dict().items()
+        if k.endswith((".lora_A", ".lora_B"))
+    }
+    if not lora_sd:
+        raise RuntimeError(
+            "No LoRA parameters found in model. "
+            "The model may not have been injected or was already merged."
+        )
+
+    path = Path(save_dir)
+    path.mkdir(parents=True, exist_ok=True)
+    save_safetensors(lora_sd, path / "adapter_model.safetensors")
+    save_json(asdict(config), path / "adapter_config.json")
+    logger.info("LoRA adapter saved to %s (%d keys)", save_dir, len(lora_sd))
+
+
+def load_lora(model: nn.Module, load_dir: str) -> LoRAConfig:
+    path = Path(load_dir)
+    raw = load_json(path / "adapter_config.json")
+    config = LoRAConfig(
+        r=raw["r"], alpha=raw["alpha"], target_modules=tuple(raw["target_modules"])
+    )
+
+    existing = _get_lora_count(model)
+    if existing > 0:
+        logger.warning(
+            "Model already has %d LoRA layers. Skipping injection, "
+            "loading weights onto existing layers only.",
+            existing,
+        )
+    else:
+        inject_lora(
+            model,
+            r=config.r,
+            alpha=config.alpha,
+            target_modules=set(config.target_modules),
+        )
+
+    weights = load_safetensors(path / "adapter_model.safetensors")
+    try:
+        missing, unexpected = model.load_state_dict(weights, strict=False)
+    except RuntimeError as e:
+        msg = str(e)
+        if "size mismatch" in msg:
+            raise RuntimeError(
+                f"LoRA weight shapes do not match the model. "
+                f"The adapter config (r={config.r}) may not match the injected layers. "
+                f"Original error: {msg}"
+            ) from e
+        raise
+
+    injected = _get_lora_count(model)
+    if injected == 0:
+        raise RuntimeError(
+            "No LoRA layers found after loading. "
+            "Inject LoRA before calling load_lora, or check the adapter config."
+        )
+
+    if missing:
+        lora_missing = [k for k in missing if "lora" in k]
+        if lora_missing:
+            raise RuntimeError(
+                f"LoRA weight keys not found in model: {lora_missing}. "
+                f"The adapter config (r={config.r}) may not match the model."
+            )
+        logger.debug("LoRA load: %d missing base-weight keys (expected)", len(missing))
+    if unexpected:
+        logger.warning("LoRA load: %d unexpected keys", len(unexpected))
+
+    logger.info("LoRA adapter loaded from %s", load_dir)
+    return config

astrai/model/components/mlp.py

@@ -8,18 +8,16 @@ from astrai.model.components.linear import Linear
 
 
 class FFNFactory(BaseFactory[nn.Module]):
-    @classmethod
+    pass
-    def create(cls, ffn_type: str, dim: int, dim_ffn: int, **kwargs) -> nn.Module:
-        return super().create(ffn_type, dim, dim_ffn, **kwargs)
 
 
 @FFNFactory.register("mlp")
 class MLP(nn.Module):
-    def __init__(self, dim: int, dim_ffn: int):
+    def __init__(self, dim: int, dim_ffn: int, down_init_std: float = 0.02):
         super().__init__()
         self.up = Linear(dim, dim_ffn)
         self.gate = Linear(dim, dim_ffn)
-        self.down = Linear(dim_ffn, dim)
+        self.down = Linear(dim_ffn, dim, init_std=down_init_std)
 
     def forward(self, x: Tensor) -> Tensor:
         gated = self.up(x) * F.silu(self.gate(x))
@@ -37,6 +35,7 @@ class DeepSeekMoE(nn.Module):
         n_shared_experts: int = 1,
         n_activated_experts: int = 2,
         topk_method: str = "greedy",
+        n_layers: int = 1,
     ):
         super().__init__()
         self.dim = dim
@@ -46,12 +45,20 @@ class DeepSeekMoE(nn.Module):
         self.topk_method = topk_method
 
         self.router = Linear(dim, n_routed_experts, bias=False)
+        moe_scale = 1 / max(n_shared_experts, 1) + 1 / n_activated_experts
+        down_init_std = 0.02 / (2 * n_layers * moe_scale) ** 0.5
 
         self.shared_experts = nn.ModuleList(
-            [MLP(dim, dim_ffn) for _ in range(n_shared_experts)]
+            [
+                MLP(dim, dim_ffn, down_init_std=down_init_std)
+                for _ in range(n_shared_experts)
+            ]
         )
         self.routed_experts = nn.ModuleList(
-            [MLP(dim, dim_ffn) for _ in range(n_routed_experts)]
+            [
+                MLP(dim, dim_ffn, down_init_std=down_init_std)
+                for _ in range(n_routed_experts)
+            ]
         )
 
     def forward(self, x: Tensor) -> Tensor:

astrai/model/components/rope.py

@@ -1,4 +1,4 @@
-from typing import Optional
+from typing import Dict, Optional
 
 import torch
 import torch.nn as nn
@@ -19,6 +19,10 @@ def get_rotary_emb(
     return torch.complex(cos, sin)
 
 
+def ntk_base(base: float, dim: int, factor: float) -> float:
+    return base * (factor ** (dim / (dim - 2)))
+
+
 def apply_rotary_emb(x: torch.Tensor, freqs_cis: Tensor) -> Tensor:
     dtype = x.dtype
     x_ = x.float().reshape(*x.shape[:-1], -1, 2)
@@ -30,11 +34,25 @@ def apply_rotary_emb(x: torch.Tensor, freqs_cis: Tensor) -> Tensor:
 
 
 class RotaryEmbedding(nn.Module):
-    def __init__(self, dim: int, max_len: int, base: float = 10000):
+    def __init__(
+        self,
+        dim: int,
+        max_len: int,
+        base: float = 10000,
+        rope_scaling: Optional[Dict] = None,
+    ):
         super().__init__()
         self.dim = dim
         self.max_len = max_len
         self.base = base
+        self.rope_scaling = rope_scaling
+
+        if rope_scaling is not None:
+            scaling_type = rope_scaling.get("type", "ntk")
+            factor = rope_scaling.get("factor", 1.0)
+            if scaling_type == "ntk":
+                self.base = ntk_base(base, dim, factor)
+
         self._set_rotary_buffer(self.max_len)
 
     def _set_rotary_buffer(self, max_len: int):

astrai/model/encoder.py

@@ -20,23 +20,15 @@ class EmbeddingEncoder(AutoModel):
         self.config = config
         rope_dim = config.dim // config.n_heads
         rope_base = config.rope_theta if config.rope_theta is not None else 10000
-        self.rotary_embedding = RotaryEmbedding(rope_dim, config.max_len, rope_base)
+        self.rotary_embedding = RotaryEmbedding(
-        self.embed_tokens = Embedding(config.vocab_size, config.dim)
+            rope_dim, config.max_len, rope_base, rope_scaling=config.rope_scaling
+        )
+        self.embed_tokens = Embedding(
+            config.vocab_size, config.dim, neftune_alpha=config.neftune_alpha
+        )
 
         self.layers = nn.ModuleList(
-            [
+            [DecoderBlock(config, layer_id) for layer_id in range(config.n_layers)]
-                DecoderBlock(
-                    config.dim,
-                    config.n_heads,
-                    config.dim_ffn,
-                    config.n_kv_heads,
-                    config.norm_eps,
-                    config.use_qk_norm,
-                    config.use_gated_attention,
-                    layer_id,
-                )
-                for layer_id in range(config.n_layers)
-            ]
         )
 
         self.norm = RMSNorm(config.dim, config.norm_eps)
@@ -66,9 +58,6 @@ class EmbeddingEncoder(AutoModel):
 
         x = self.embed_tokens(input_ids)
 
-        if position_ids is None:
-            position_ids = torch.arange(S, device=x.device).unsqueeze(0).expand(B, -1)
-
         rotary_emb = self.rotary_embedding(x, position_ids)
         attn_mask = process_attention_mask(x, position_ids, input_mask, is_causal=False)
 

astrai/model/transformer.py

@@ -1,11 +1,11 @@
-from typing import Any, Mapping, Optional
+from typing import Any, Dict, Mapping, Optional
 
 import torch
 import torch.nn as nn
 from torch import Tensor
 
 from astrai.config.model_config import AutoRegressiveLMConfig
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.automodel import AutoModel
 from astrai.model.components.decoder_block import DecoderBlock
 from astrai.model.components.embedding import Embedding
@@ -26,24 +26,21 @@ def process_attention_mask(
         return input_mask
 
     device = input_tensor.device
-    dtype = input_tensor.dtype
+    B = input_tensor.size(0)
-    B, S = input_tensor.size()[:2]
     T = position_ids.max().item() + 1
 
     if input_mask is None:
         if position_ids.min().item() == 0 and is_causal:
             return None
-        pad = torch.ones(B, T, dtype=torch.bool, device=device)
+        attend = torch.ones(B, 1, T, dtype=torch.bool, device=device)
     else:
-        pad = input_mask[:, :T].to(device=device, dtype=torch.bool)
+        attend = input_mask[:, :T].to(device=device, dtype=torch.bool).unsqueeze(1)
 
-    attend = pad.view(B, 1, T).expand(B, S, T).clone()
     if is_causal:
-        attend &= position_ids.unsqueeze(-1) >= torch.arange(T, device=device)
+        causal = position_ids.unsqueeze(-1) >= torch.arange(T, device=device)
+        attend = attend & causal
 
-    return torch.full(
+    return attend.unsqueeze(1)
-        (B, 1, S, T), -torch.finfo(dtype).max / 2, dtype=dtype, device=device
-    ).masked_fill_(attend.unsqueeze(1), 0.0)
 
 
 @AutoModel.register("autoregressive_lm")
@@ -59,32 +56,15 @@ class AutoRegressiveLM(AutoModel):
             else config.dim // config.n_heads
         )
         rope_base = config.rope_theta if config.rope_theta is not None else 10000
-        self.rotary_embedding = RotaryEmbedding(rope_dim, config.max_len, rope_base)
+        self.rotary_embedding = RotaryEmbedding(
-        self.embed_tokens = Embedding(config.vocab_size, config.dim)
+            rope_dim, config.max_len, rope_base, rope_scaling=config.rope_scaling
+        )
+        self.embed_tokens = Embedding(
+            config.vocab_size, config.dim, neftune_alpha=config.neftune_alpha
+        )
 
         self.layers = nn.ModuleList(
-            [
+            [DecoderBlock(config, layer_id) for layer_id in range(config.n_layers)]
-                DecoderBlock(
-                    config.dim,
-                    config.n_heads,
-                    config.dim_ffn,
-                    config.n_kv_heads,
-                    config.norm_eps,
-                    config.use_qk_norm,
-                    config.use_gated_attention,
-                    layer_id,
-                    attn_type=config.attn_type,
-                    ffn_type=config.ffn_type,
-                    n_routed_experts=config.n_routed_experts,
-                    n_shared_experts=config.n_shared_experts,
-                    n_activated_experts=config.n_activated_experts,
-                    topk_method=config.topk_method,
-                    kv_lora_rank=config.kv_lora_rank,
-                    qk_nope_head_dim=config.qk_nope_head_dim,
-                    qk_rope_head_dim=config.qk_rope_head_dim,
-                )
-                for layer_id in range(config.n_layers)
-            ]
         )
 
         self.norm = RMSNorm(config.dim, config.norm_eps)
@@ -132,9 +112,9 @@ class AutoRegressiveLM(AutoModel):
         self,
         input_ids: Tensor,
         input_mask: Optional[Tensor] = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
         position_ids: Optional[Tensor] = None,
-    ) -> Tensor:
+    ) -> Dict[str, Tensor]:
         assert input_ids.ndim == 2
 
         x = self.embed_tokens(input_ids)

astrai/parallel/__init__.py

@@ -1,3 +1,13 @@
+from astrai.parallel.executor import (
+    AccumOptimizer,
+    AccumScheduler,
+    BaseExecutor,
+    DDPExecutor,
+    ExecutorFactory,
+    FSDPExecutor,
+    GradientState,
+    NoneExecutor,
+)
 from astrai.parallel.module import ColumnParallelLinear, RowParallelLinear
 from astrai.parallel.setup import (
     get_current_device,
@@ -17,4 +27,12 @@ __all__ = [
     "spawn_parallel_fn",
     "RowParallelLinear",
     "ColumnParallelLinear",
+    "ExecutorFactory",
+    "BaseExecutor",
+    "GradientState",
+    "AccumOptimizer",
+    "AccumScheduler",
+    "NoneExecutor",
+    "DDPExecutor",
+    "FSDPExecutor",
 ]

astrai/parallel/executor.py

@@ -0,0 +1,286 @@
+"""Unified training executor — parallel strategy + gradient accumulation."""
+
+import contextlib
+import logging
+import os
+from contextlib import contextmanager
+from typing import Optional, Tuple
+
+import torch
+import torch.nn as nn
+from torch.distributed.fsdp import FullStateDictConfig, StateDictType
+from torch.distributed.fsdp import FullyShardedDataParallel as FSDP
+from torch.nn.parallel import DistributedDataParallel as DDP
+from torch.optim import Optimizer
+from torch.optim.lr_scheduler import LRScheduler
+from torch.utils.data import DataLoader
+
+from astrai.factory import BaseFactory
+from astrai.parallel.setup import get_rank, get_world_size
+
+logger = logging.getLogger(__name__)
+
+
+class GradientState:
+    def __init__(self, grad_accum_steps: int = 1):
+        self.num_steps = max(grad_accum_steps, 1)
+        self._step: int = 0
+        self._sync_gradients: bool = True
+
+    @property
+    def sync_gradients(self) -> bool:
+        return self._sync_gradients
+
+    def _do_sync(self):
+        self._step += 1
+        self._sync_gradients = self._step % self.num_steps == 0
+
+
+class AccumOptimizer:
+    def __init__(self, optimizer: Optimizer, gradient_state: GradientState):
+        self.optimizer = optimizer
+        self.gradient_state = gradient_state
+
+    def step(self, closure=None):
+        if self.gradient_state.sync_gradients:
+            self.optimizer.step(closure)
+
+    def zero_grad(self):
+        if self.gradient_state.sync_gradients:
+            self.optimizer.zero_grad()
+
+    @property
+    def param_groups(self):
+        return self.optimizer.param_groups
+
+    def state_dict(self):
+        return self.optimizer.state_dict()
+
+    def load_state_dict(self, d):
+        self.optimizer.load_state_dict(d)
+
+
+class AccumScheduler:
+    def __init__(self, scheduler: LRScheduler, gradient_state: GradientState):
+        self.scheduler = scheduler
+        self.gradient_state = gradient_state
+
+    def step(self):
+        if self.gradient_state.sync_gradients:
+            self.scheduler.step()
+
+    def state_dict(self):
+        return self.scheduler.state_dict()
+
+    def load_state_dict(self, d):
+        self.scheduler.load_state_dict(d)
+
+    def get_last_lr(self):
+        return self.scheduler.get_last_lr()
+
+
+class BaseExecutor:
+    def __init__(self, grad_accum_steps: int = 1):
+        self.gradient_state = GradientState(grad_accum_steps)
+
+    def prepare(
+        self,
+        model: nn.Module,
+        optimizer: Optional[Optimizer] = None,
+        dataloader: Optional[DataLoader] = None,
+        scheduler: Optional[LRScheduler] = None,
+    ) -> Tuple[
+        nn.Module, Optional[Optimizer], Optional[DataLoader], Optional[LRScheduler]
+    ]:
+        model = self._prepare_model(model)
+        if optimizer is not None:
+            optimizer = AccumOptimizer(optimizer, self.gradient_state)
+        if scheduler is not None:
+            scheduler = AccumScheduler(scheduler, self.gradient_state)
+        return model, optimizer, dataloader, scheduler
+
+    def _prepare_model(self, model: nn.Module) -> nn.Module:
+        return model
+
+    def _no_sync(self, model: nn.Module):
+        return contextlib.nullcontext()
+
+    @contextmanager
+    def accumulate(self, model: nn.Module):
+        self.gradient_state._do_sync()
+        if not self.gradient_state.sync_gradients:
+            with self._no_sync(model):
+                yield
+        else:
+            yield
+
+    def backward(self, loss: torch.Tensor):
+        loss.backward()
+
+    def unwrap_model(self, model: nn.Module):
+        return model.state_dict()
+
+    @property
+    def use_distributed(self) -> bool:
+        return get_world_size() > 1
+
+    @property
+    def sync_gradients(self) -> bool:
+        return self.gradient_state.sync_gradients
+
+    @property
+    def grad_accum_steps(self) -> int:
+        return self.gradient_state.num_steps
+
+    def clip_grad_norm(self, model: nn.Module, max_norm: float) -> float:
+        total_norm = torch.nn.utils.clip_grad_norm_(model.parameters(), max_norm)
+        if isinstance(total_norm, torch.Tensor):
+            return total_norm.item()
+        return total_norm
+
+
+class ExecutorFactory(BaseFactory[BaseExecutor]):
+    pass
+
+
+@ExecutorFactory.register("none")
+class NoneExecutor(BaseExecutor):
+    pass
+
+
+@ExecutorFactory.register("ddp")
+class DDPExecutor(BaseExecutor):
+    def __init__(
+        self,
+        grad_accum_steps: int = 1,
+        dim: int = 0,
+        broadcast_buffers: bool = True,
+        init_sync: bool = True,
+        process_group=None,
+        bucket_cap_mb: int = 25,
+        find_unused_parameters: bool = False,
+        check_reduction: bool = False,
+        gradient_as_bucket_view: bool = False,
+        static_graph: bool = False,
+        delay_all_reduce_named_params=None,
+        param_to_hook_all_reduce=None,
+        mixed_precision=None,
+        device_mesh=None,
+    ):
+        super().__init__(grad_accum_steps=grad_accum_steps)
+        self._ddp_kwargs = dict(
+            dim=dim,
+            broadcast_buffers=broadcast_buffers,
+            init_sync=init_sync,
+            process_group=process_group,
+            bucket_cap_mb=bucket_cap_mb,
+            find_unused_parameters=find_unused_parameters,
+            check_reduction=check_reduction,
+            gradient_as_bucket_view=gradient_as_bucket_view,
+            static_graph=static_graph,
+            delay_all_reduce_named_params=delay_all_reduce_named_params,
+            param_to_hook_all_reduce=param_to_hook_all_reduce,
+            mixed_precision=mixed_precision,
+            device_mesh=device_mesh,
+        )
+
+    def _prepare_model(self, model: nn.Module) -> nn.Module:
+        if not self.use_distributed:
+            logger.warning("DDP backend selected but world_size=1, model not wrapped")
+            return model
+        local_rank = int(os.environ.get("LOCAL_RANK", get_rank()))
+        model = DDP(
+            model,
+            device_ids=[local_rank],
+            output_device=local_rank,
+            **self._ddp_kwargs,
+        )
+        logger.info("Model wrapped with DDP (world_size=%d)", get_world_size())
+        return model
+
+    def _no_sync(self, model: nn.Module):
+        if isinstance(model, DDP):
+            return model.no_sync()
+        return contextlib.nullcontext()
+
+    def unwrap_model(self, model: nn.Module):
+        if isinstance(model, DDP):
+            return model.module.state_dict()
+        return model.state_dict()
+
+
+@ExecutorFactory.register("fsdp")
+class FSDPExecutor(BaseExecutor):
+    def __init__(
+        self,
+        grad_accum_steps: int = 1,
+        process_group=None,
+        sharding_strategy=None,
+        cpu_offload=None,
+        auto_wrap_policy=None,
+        backward_prefetch=None,
+        mixed_precision=None,
+        ignored_modules=None,
+        param_init_fn=None,
+        sync_module_states: bool = False,
+        forward_prefetch: bool = False,
+        limit_all_gathers: bool = True,
+        ignored_states=None,
+        device_mesh=None,
+    ):
+        super().__init__(grad_accum_steps=grad_accum_steps)
+        self._fsdp_kwargs = {
+            k: v
+            for k, v in dict(
+                process_group=process_group,
+                sharding_strategy=sharding_strategy,
+                cpu_offload=cpu_offload,
+                auto_wrap_policy=auto_wrap_policy,
+                backward_prefetch=backward_prefetch,
+                mixed_precision=mixed_precision,
+                ignored_modules=ignored_modules,
+                param_init_fn=param_init_fn,
+                sync_module_states=sync_module_states,
+                forward_prefetch=forward_prefetch,
+                limit_all_gathers=limit_all_gathers,
+                use_orig_params=True,
+                ignored_states=ignored_states,
+                device_mesh=device_mesh,
+            ).items()
+            if v is not None
+        }
+        self._original_model: Optional[nn.Module] = None
+
+    def _prepare_model(self, model: nn.Module) -> nn.Module:
+        if not self.use_distributed:
+            logger.warning("FSDP backend selected but world_size=1, model not wrapped")
+            return model
+        self._original_model = model
+        device_id = torch.device("cuda", get_rank())
+        model = FSDP(model, device_id=device_id, **self._fsdp_kwargs)
+        logger.info("Model wrapped with FSDP (world_size=%d)", get_world_size())
+        return model
+
+    def _no_sync(self, model: nn.Module):
+        if isinstance(model, FSDP):
+            return model.no_sync()
+        return contextlib.nullcontext()
+
+    def clip_grad_norm(self, model: nn.Module, max_norm: float) -> float:
+        if isinstance(model, FSDP) and self.use_distributed:
+            total_norm = model.clip_grad_norm_(max_norm)
+            if isinstance(total_norm, torch.Tensor):
+                return total_norm.item()
+            return total_norm
+        return super().clip_grad_norm(model, max_norm)
+
+    def unwrap_model(self, model: nn.Module):
+        if isinstance(model, FSDP) and self.use_distributed:
+            with FSDP.state_dict_type(
+                model,
+                StateDictType.FULL_STATE_DICT,
+                FullStateDictConfig(offload_to_cpu=True, rank0_only=False),
+            ):
+                return model.state_dict()
+
+        return model.state_dict()

astrai/parallel/setup.py

@@ -1,4 +1,5 @@
 import os
+from abc import ABC, abstractmethod
 from contextlib import contextmanager
 from functools import wraps
 from typing import Callable
@@ -30,6 +31,7 @@ def get_rank() -> int:
 def setup_parallel(
     rank: int,
     world_size: int,
+    local_rank: int,
     backend: str = "nccl",
     master_addr: str = "localhost",
     master_port: str = "29500",
@@ -41,20 +43,26 @@ def setup_parallel(
         return
 
     if world_size <= 1:
+        device_id = torch.device(device_type, local_rank)
+        os.environ["LOCAL_RANK"] = str(local_rank)
+        os.environ["WORLD_SIZE"] = "1"
+        os.environ["LOCAL_DEVICE"] = str(device_id)
         yield None
         return
 
-    device_id = torch.device(device_type, rank)
+    device_id = torch.device(device_type, local_rank)
 
     os.environ["MASTER_ADDR"] = master_addr
     os.environ["MASTER_PORT"] = master_port
-    os.environ["LOCAL_RANK"] = str(rank)
+    os.environ["LOCAL_RANK"] = str(local_rank)
     os.environ["WORLD_SIZE"] = str(world_size)
     os.environ["LOCAL_DEVICE"] = str(device_id)
 
-    dist.init_process_group(
+    pg_kwargs = dict(rank=rank, world_size=world_size, backend=backend)
-        rank=rank, world_size=world_size, backend=backend, device_id=device_id
+    if backend in ("nccl", "ccl"):
-    )
+        pg_kwargs["device_id"] = device_id
+
+    dist.init_process_group(**pg_kwargs)
 
     try:
         if backend == "nccl" and torch.cuda.is_available():
@@ -90,7 +98,7 @@ def only_on_rank(rank, sync=False):
     return decorator
 
 
-def wrapper_spawn_func(
+def _run_single_rank(
     rank: int,
     world_size: int,
     backend: str,
@@ -100,10 +108,10 @@ def wrapper_spawn_func(
     func: Callable,
     kwargs: dict,
 ):
-    try:
     with setup_parallel(
         rank=rank,
         world_size=world_size,
+        local_rank=rank,
         backend=backend,
         master_addr=master_addr,
         master_port=master_port,
@@ -111,11 +119,99 @@ def wrapper_spawn_func(
     ):
         func(**kwargs)
 
-    except Exception as e:
+
-        print(f"Error in rank {rank}: {e}")
+class LaunchStrategy(ABC):
+    """Strategy for launching a function in a distributed context."""
+
+    def __init__(
+        self,
+        world_size: int,
+        backend: str,
+        master_addr: str,
+        master_port: str,
+        device_type: str,
+        start_method: str,
+    ):
+        self.world_size = world_size
+        self.backend = backend
+        self.master_addr = master_addr
+        self.master_port = master_port
+        self.device_type = device_type
+        self.start_method = start_method
+
+    @abstractmethod
+    def launch(self, func: Callable, **kwargs):
+        raise NotImplementedError
+
+
+class TorchrunStrategy(LaunchStrategy):
+    """External orchestrator (torchrun, SLURM, K8s) — env vars pre-set."""
+
+    def launch(self, func: Callable, **kwargs):
+        rank = int(os.environ["RANK"])
+        world_size = int(os.environ["WORLD_SIZE"])
+        local_rank = int(os.environ.get("LOCAL_RANK", rank))
+        with setup_parallel(
+            rank=rank,
+            world_size=world_size,
+            local_rank=local_rank,
+            backend=self.backend,
+            master_addr=os.environ.get("MASTER_ADDR", self.master_addr),
+            master_port=os.environ.get("MASTER_PORT", self.master_port),
+            device_type=self.device_type,
+        ):
+            func(**kwargs)
+
+
+class LocalStrategy(LaunchStrategy):
+    """Local launcher — single-process or mp.start_processes."""
+
+    def launch(self, func: Callable, **kwargs):
+        args = (
+            self.world_size,
+            self.backend,
+            self.master_addr,
+            self.master_port,
+            self.device_type,
+            func,
+            kwargs,
+        )
+
+        if self.world_size == 1:
+            _run_single_rank(0, *args)
+            return
+
+        ctx = mp.start_processes(
+            _run_single_rank,
+            args=args,
+            nprocs=self.world_size,
+            start_method=self.start_method,
+            join=False,
+        )
+        try:
+            while not ctx.join():
+                pass
+        except BaseException:
+            for p in ctx.processes:
+                p.terminate()
+            ctx.join()
             raise
 
 
+def _detect_launcher() -> str:
+    """Detect the distributed launcher from environment.
+
+    Returns one of: "torchelastic", "torchrun", "external", "local".
+    """
+    if dist.is_torchelastic_launched():
+        return "torchelastic"
+    if "LOCAL_WORLD_SIZE" in os.environ:
+        return "torchrun"
+    if "RANK" in os.environ and "WORLD_SIZE" in os.environ:
+        return "external"
+    return "local"
+
+
 def spawn_parallel_fn(
     func: Callable,
     world_size: int,
@@ -126,42 +222,13 @@ def spawn_parallel_fn(
     start_method: str = "spawn",
     **kwargs,
 ):
-    # clear environment variables
+    launcher = _detect_launcher()
-    for key in [
+    if launcher in ("torchelastic", "torchrun", "external"):
-        "MASTER_ADDR",
+        strategy = TorchrunStrategy(
-        "MASTER_PORT",
+            world_size, backend, master_addr, master_port, device_type, start_method
-        "RANK",
-        "WORLD_SIZE",
-        "LOCAL_RANK",
-        "LOCAL_DEVICE",
-    ]:
-        if key in os.environ:
-            del os.environ[key]
-
-    if world_size == 1:
-        device_id = torch.device(device_type, 0)
-        os.environ["LOCAL_RANK"] = "0"
-        os.environ["WORLD_SIZE"] = "1"
-        os.environ["LOCAL_DEVICE"] = str(device_id)
-
-        func(**kwargs)
-        return
-
-    wrapper_spawn_func_args = (
-        world_size,
-        backend,
-        master_addr,
-        master_port,
-        device_type,
-        func,
-        kwargs,
         )
-
+    else:
-    mp.start_processes(
+        strategy = LocalStrategy(
-        wrapper_spawn_func,
+            world_size, backend, master_addr, master_port, device_type, start_method
-        args=wrapper_spawn_func_args,
-        nprocs=world_size,
-        start_method=start_method,
-        join=True,
-        daemon=True,
         )
+    strategy.launch(func, **kwargs)

astrai/preprocessing/__init__.py

@@ -0,0 +1,32 @@
+from astrai.preprocessing.builder import (
+    BaseMaskBuilder,
+    MaskBuilderFactory,
+    SectionedMaskBuilder,
+)
+from astrai.preprocessing.packing import (
+    PackingStrategy,
+    PackingStrategyFactory,
+)
+from astrai.preprocessing.pipeline import Pipeline, filter_by_length
+from astrai.preprocessing.position_id import (
+    PositionIdStrategy,
+    PositionIdStrategyFactory,
+)
+from astrai.preprocessing.writer import (
+    StoreWriter,
+    StoreWriterFactory,
+)
+
+__all__ = [
+    "BaseMaskBuilder",
+    "MaskBuilderFactory",
+    "PackingStrategy",
+    "PackingStrategyFactory",
+    "Pipeline",
+    "PositionIdStrategy",
+    "PositionIdStrategyFactory",
+    "SectionedMaskBuilder",
+    "StoreWriter",
+    "StoreWriterFactory",
+    "filter_by_length",
+]

astrai/preprocessing/builder.py

@@ -0,0 +1,315 @@
+"""Mask building for preprocessing pipeline.
+
+:class:`SectionRenderer` converts section specs into token ids and loss
+masks (template / text / value extraction).  :class:`SectionedMaskBuilder`
+orchestrates single-output / multi-output (DPO / GRPO) assembly.
+"""
+
+from abc import ABC, abstractmethod
+from typing import Optional
+
+from astrai.factory import BaseFactory
+
+
+def _extract_domain(item: dict, domain_key: Optional[str]) -> str:
+    if not domain_key:
+        return "__default__"
+    val = item.get(domain_key, "__default__")
+    return val if isinstance(val, str) else "__default__"
+
+
+def _resolve_action(action: str, role: str, config) -> str:
+    if action == "$role":
+        return config.mask.get(role, config.mask_default)
+    return action
+
+
+class SectionRenderer:
+    """Render section specs into ``(ids, loss_mask)`` tuples."""
+
+    def process_sections(
+        self,
+        item: dict,
+        sections: list,
+        config,
+        tokenizer,
+        *,
+        is_top_level: bool = False,
+    ):
+        all_ids: list[int] = []
+        loss_mask: list[int] = []
+
+        has_template = any(s.get("template") for s in sections)
+        is_text_config = not has_template and all(
+            s["action"] == "train" for s in sections
+        )
+
+        if is_top_level and has_template and tokenizer.bos_token_id is not None:
+            all_ids.append(tokenizer.bos_token_id)
+            loss_mask.append(0)
+
+        first_section = True
+        for sec in sections:
+            field = sec["field"]
+            action = sec["action"]
+            use_template = sec.get("template", False)
+            add_special = sec.get(
+                "add_special_tokens", not use_template and first_section
+            )
+
+            if use_template:
+                success = self._append_template(
+                    item, field, action, tokenizer, config, all_ids, loss_mask
+                )
+                if not success:
+                    continue
+            else:
+                success = self._append_text(
+                    item,
+                    field,
+                    action,
+                    tokenizer,
+                    add_special,
+                    is_text_config,
+                    config,
+                    all_ids,
+                    loss_mask,
+                )
+                if not success:
+                    continue
+
+            first_section = False
+
+        max_len = config.preprocessing.max_seq_len
+        all_ids = all_ids[:max_len]
+        loss_mask = loss_mask[: len(all_ids)]
+
+        if not all_ids:
+            return None, None
+
+        if is_top_level and has_template and len(all_ids) <= 1:
+            return None, None
+
+        return all_ids, loss_mask
+
+    def process_list_field(self, item: dict, sections: list, config, tokenizer):
+        all_ids: list[int] = []
+        loss_mask: list[int] = []
+
+        for sec in sections:
+            field = sec["field"]
+            action = sec["action"]
+            use_template = sec.get("template", False)
+
+            values = item.get(field)
+            if not isinstance(values, list):
+                continue
+
+            for val in values:
+                if use_template:
+                    if isinstance(val, list):
+                        wrapper = {field: val}
+                        self._append_template(
+                            wrapper,
+                            field,
+                            action,
+                            tokenizer,
+                            config,
+                            all_ids,
+                            loss_mask,
+                        )
+                else:
+                    wrapper = {field: str(val)}
+                    self._append_text(
+                        wrapper,
+                        field,
+                        action,
+                        tokenizer,
+                        False,
+                        False,
+                        config,
+                        all_ids,
+                        loss_mask,
+                    )
+
+        max_len = config.preprocessing.max_seq_len
+        all_ids = all_ids[:max_len]
+        loss_mask = loss_mask[: len(all_ids)]
+
+        if not all_ids:
+            return None, None
+        return all_ids, loss_mask
+
+    @staticmethod
+    def is_value_section(sections: list) -> bool:
+        return len(sections) == 1 and sections[0].get("action") == "value"
+
+    @staticmethod
+    def extract_raw_value(item: dict, sections: list):
+        sec = sections[0]
+        field = sec["field"]
+        raw = item.get(field)
+        if raw is None:
+            return None
+        if isinstance(raw, list):
+            return [float(v) for v in raw]
+        return [float(raw)]
+
+    def _append_template(
+        self, item, field, action, tokenizer, config, all_ids, loss_mask
+    ):
+        messages = item.get(field)
+        if not isinstance(messages, list) or not messages:
+            return False
+        for msg in messages:
+            role = msg.get("role", "")
+            act = _resolve_action(action, role, config)
+            rendered = tokenizer.apply_chat_template(
+                [msg], tokenize=False, add_generation_prompt=False
+            )
+            ids = tokenizer.encode(rendered, add_special_tokens=False)
+            all_ids.extend(ids)
+            val = 1 if act == "train" else 0
+            loss_mask.extend([val] * len(ids))
+        return True
+
+    def _append_text(
+        self,
+        item,
+        field,
+        action,
+        tokenizer,
+        add_special,
+        is_text_config,
+        config,
+        all_ids,
+        loss_mask,
+    ):
+        text = str(item.get(field, ""))
+        if not text.strip():
+            return False
+        if is_text_config:
+            pp = config.preprocessing
+            if pp.min_chars > 0 and len(text) < pp.min_chars:
+                return False
+            if len(text) > pp.max_chars:
+                return False
+        ids = tokenizer.encode(text, add_special_tokens=add_special)
+        all_ids.extend(ids)
+        val = 1 if action == "train" else 0
+        loss_mask.extend([val] * len(ids))
+        return True
+
+
+class BaseMaskBuilder(ABC):
+    """Convert a JSONL item into token ids and optional loss_mask."""
+
+    @abstractmethod
+    def build(self, item: dict, config, tokenizer) -> Optional[dict]: ...
+
+
+class MaskBuilderFactory(BaseFactory["BaseMaskBuilder"]):
+    pass
+
+
+@MaskBuilderFactory.register("sectioned")
+class SectionedMaskBuilder(BaseMaskBuilder):
+    """Config-driven builder supporting single and multi-output modes.
+
+    Single-output::
+
+        {"input": {"sections": [
+            {"field": "messages", "action": "$role", "template": true}
+        ]}}
+        → {"sequence": [...], "loss_mask": [...], "domain": "..."}
+
+    Multi-output (DPO / GRPO)::
+
+        {"input": {"sources": {
+            "chosen": {"sections": [{"field": "chosen", "action": "$role", "template": true}]},
+            "rejected": {"sections": [{"field": "rejected", "action": "$role", "template": true}]},
+        }}}
+        → {"chosen": [...], "chosen_mask": [...], "rejected": [...], "rejected_mask": [...], "domain": "..."}
+
+    Output spec fields::
+
+        sections      – list of section specs (same format as single-output)
+        list_field    – True when JSONL field holds a list (GRPO responses)
+        mask_key      – explicit loss-mask output key (default: ``"{output_key}_mask"``)
+    """
+
+    def __init__(self):
+        self.renderer = SectionRenderer()
+
+    def build(self, item: dict, config, tokenizer) -> Optional[dict]:
+        sources_spec = getattr(config.input, "sources", None)
+        if sources_spec:
+            return self._build_multi(item, sources_spec, config, tokenizer)
+        return self._build_single(item, config, tokenizer)
+
+    def _build_single(self, item: dict, config, tokenizer) -> Optional[dict]:
+        sections = config.input.sections
+        if not sections:
+            return None
+
+        ids, mask = self.renderer.process_sections(
+            item, sections, config, tokenizer, is_top_level=True
+        )
+        if ids is None:
+            return None
+
+        result: dict = {
+            "sequence": ids,
+            "domain": _extract_domain(item, config.output.domain_key),
+        }
+        if not all(m == 1 for m in mask):
+            result["loss_mask"] = mask
+        return result
+
+    def _build_multi(
+        self, item: dict, sources_spec: dict, config, tokenizer
+    ) -> Optional[dict]:
+        result: dict = {}
+        any_output = False
+
+        for output_key, spec in sources_spec.items():
+            sections = spec.get("sections", [])
+            if not sections:
+                continue
+
+            if self.renderer.is_value_section(sections):
+                ids = self.renderer.extract_raw_value(item, sections)
+                if ids is None:
+                    continue
+                result[output_key] = ids
+                any_output = True
+                continue
+
+            list_field = spec.get("list_field", False)
+            mask_key = spec.get("mask_key", f"{output_key}_mask")
+
+            if list_field:
+                ids, mask = self.renderer.process_list_field(
+                    item, sections, config, tokenizer
+                )
+            else:
+                ids, mask = self.renderer.process_sections(
+                    item, sections, config, tokenizer, is_top_level=True
+                )
+
+            if ids is None:
+                continue
+
+            result[output_key] = ids
+            if not all(m == 1 for m in mask):
+                result[mask_key] = mask
+            elif "mask_key" in spec:
+                result[mask_key] = mask
+
+            any_output = True
+
+        if not any_output:
+            return None
+
+        result["domain"] = _extract_domain(item, config.output.domain_key)
+        return result

astrai/preprocessing/packing.py

@@ -0,0 +1,121 @@
+"""Sequence packing strategies for shard-level reordering and truncation.
+
+Each strategy receives the accumulated ``{key: [list of token lists]}``
+dict for a shard and returns a reordered / truncated version.  The
+pipeline later flattens the result into contiguous tensors.
+"""
+
+from abc import ABC, abstractmethod
+from typing import Dict, List
+
+from astrai.factory import BaseFactory
+
+
+def _truncate(seq: List[int], max_len: int, mode: str) -> List[int]:
+    if len(seq) <= max_len:
+        return seq
+    if mode == "keep_end":
+        return seq[-max_len:]
+    return seq[:max_len]
+
+
+class PackingStrategy(ABC):
+    """Reorder and truncate sequences within a shard."""
+
+    @abstractmethod
+    def apply(
+        self,
+        keys: Dict[str, List[List[int]]],
+        max_packed_len: int,
+        truncation_mode: str,
+    ) -> Dict[str, List[List[int]]]:
+        raise NotImplementedError
+
+
+class PackingStrategyFactory(BaseFactory["PackingStrategy"]):
+    pass
+
+
+@PackingStrategyFactory.register("simple")
+class SimplePacking(PackingStrategy):
+    def apply(
+        self,
+        keys: Dict[str, List[List[int]]],
+        max_packed_len: int,
+        truncation_mode: str,
+    ) -> Dict[str, List[List[int]]]:
+        return {
+            k: [_truncate(v, max_packed_len, truncation_mode) for v in vals]
+            for k, vals in keys.items()
+        }
+
+
+@PackingStrategyFactory.register("bfd")
+class BFDPacking(PackingStrategy):
+    """Best-Fit Decreasing bin packing.
+
+    Assigns sequences to bins using a best-fit heuristic (sorted by
+    decreasing length) and concatenates sequences within each bin into
+    a single packed sequence.  Packed sequences are truncated to
+    *max_packed_len* so that each packed bin fits within one context
+    window during training.
+    """
+
+    def apply(
+        self,
+        keys: Dict[str, List[List[int]]],
+        max_packed_len: int,
+        truncation_mode: str,
+    ) -> Dict[str, List[List[int]]]:
+        sequences = keys.get("sequence", [])
+        if not sequences:
+            return keys
+        bins = self._plan(sequences, max_packed_len, truncation_mode)
+
+        packed: Dict[str, List[List[int]]] = {}
+        for k, vals in keys.items():
+            packed[k] = [
+                _truncate(
+                    self._concat_bin(vals, bin_indices),
+                    max_packed_len,
+                    truncation_mode,
+                )
+                for bin_indices in bins
+            ]
+        return packed
+
+    @staticmethod
+    def _concat_bin(vals: List[List[int]], indices: List[int]) -> List[int]:
+        result: List[int] = []
+        for i in indices:
+            result.extend(vals[i])
+        return result
+
+    @staticmethod
+    def _plan(
+        sequences: List[List[int]], max_packed_len: int, truncation_mode: str
+    ) -> List[List[int]]:
+        n = len(sequences)
+        order = sorted(range(n), key=lambda i: len(sequences[i]), reverse=True)
+        bins: List[List[int]] = []
+        bin_lengths: List[int] = []
+
+        for orig_idx in order:
+            seq_len = len(
+                _truncate(sequences[orig_idx], max_packed_len, truncation_mode)
+            )
+            best_bin = None
+            best_remain = max_packed_len + 1
+            for i, bl in enumerate(bin_lengths):
+                remain = max_packed_len - bl
+                if seq_len <= remain < best_remain:
+                    best_remain = remain
+                    best_bin = i
+            if best_bin is not None:
+                bins[best_bin].append(orig_idx)
+                bin_lengths[best_bin] += seq_len
+            else:
+                bins.append([orig_idx])
+                bin_lengths.append(seq_len)
+
+        return bins

astrai/preprocessing/pipeline.py

@@ -0,0 +1,192 @@
+"""Config-driven JSONL preprocessing pipeline.
+
+Composes a :class:`BaseMaskBuilder` (selected by ``input.type``) with
+sharding and flush to ``.h5`` / ``.bin`` storage.  Packing, position-id
+generation and storage writing are each delegated to pluggable strategies,
+dispatched by configuration keys.
+"""
+
+import json
+import logging
+import os
+from collections import defaultdict
+from itertools import chain
+from typing import Dict, List, Optional
+
+import torch
+import tqdm
+
+from astrai.config.preprocess_config import PipelineConfig
+from astrai.preprocessing.builder import MaskBuilderFactory
+from astrai.preprocessing.packing import PackingStrategyFactory
+from astrai.preprocessing.position_id import PositionIdStrategyFactory
+from astrai.preprocessing.writer import StoreWriterFactory
+from astrai.tokenize import AutoTokenizer
+
+logger = logging.getLogger(__name__)
+
+_STR_TO_DTYPE: dict[str, torch.dtype] = {
+    "bool": torch.bool,
+    "uint8": torch.uint8,
+    "int8": torch.int8,
+    "int16": torch.int16,
+    "int32": torch.int32,
+    "int64": torch.int64,
+    "float16": torch.float16,
+    "float32": torch.float32,
+    "float64": torch.float64,
+}
+
+
+def filter_by_length(text: str, min_len: int = 50, max_len: int = 2_000_000) -> bool:
+    return min_len <= len(text) <= max_len
+
+
+class Pipeline:
+    """Tokenization pipeline driven by a declarative :class:`PipelineConfig`.
+
+    Usage::
+
+        config = PipelineConfig.from_file("sft_pipeline.json")
+        Pipeline(config, ["data.jsonl"], output_dir="out", tokenizer_path="params").run()
+    """
+
+    def __init__(
+        self,
+        config: PipelineConfig,
+        input_paths: list[str],
+        output_dir: str,
+        tokenizer_path: str,
+    ):
+        os.makedirs(output_dir, exist_ok=True)
+        self.config = config
+        self.paths = input_paths
+        self.output_dir = output_dir
+        self.tokenizer_path = tokenizer_path
+
+        self.mask_builder = MaskBuilderFactory.create("sectioned")
+        self._packer = PackingStrategyFactory.create(
+            config.preprocessing.packing_strategy
+        )
+        self._position_id = PositionIdStrategyFactory.create(
+            config.output.position_ids_mode
+        )
+        self._writer = StoreWriterFactory.create(config.output.storage_format)
+
+    def transform(self, item: dict) -> Optional[dict]:
+        return self.mask_builder.build(item, self.config, self._tokenizer)
+
+    def run(self):
+        self._tokenizer = AutoTokenizer.from_pretrained(self.tokenizer_path)
+        domains: dict = defaultdict(lambda: defaultdict(list))
+        total_tokens = 0
+        shard_idx: dict[str, int] = defaultdict(int)
+        count = 0
+
+        pp = self.config.preprocessing
+
+        for item in tqdm.tqdm(
+            self._iter_items(), desc="Tokenizing", unit="docs", mininterval=0.5
+        ):
+            if pp.max_items and count >= pp.max_items:
+                break
+
+            try:
+                result = self.transform(item)
+            except Exception:
+                logger.warning(
+                    "Failed to process item #%d, skipping", count + 1, exc_info=True
+                )
+                continue
+            if result is None:
+                continue
+
+            domain = result.pop("domain", "__default__")
+
+            is_multi = bool(getattr(self.config.input, "sources", None))
+            if is_multi:
+                ids = self._primary_ids(result)
+            else:
+                ids = result.pop("sequence")
+                result["sequence"] = ids
+
+            if not ids:
+                continue
+
+            bucket = domains[domain]
+            self._align_bucket(bucket, result, ids)
+            for key, val in result.items():
+                bucket[key].append(val)
+
+            count += 1
+            total_tokens += len(ids)
+
+            if total_tokens >= self.config.output.max_tokens_per_shard:
+                self._flush(domains, shard_idx)
+                domains.clear()
+                total_tokens = 0
+
+        if total_tokens > 0:
+            self._flush(domains, shard_idx)
+
+    @staticmethod
+    def _primary_ids(result: dict) -> list:
+        """Return the first list-valued entry in *result* as the primary id
+        sequence for token counting."""
+        for val in result.values():
+            if isinstance(val, list) and val and isinstance(val[0], int):
+                return val
+        return []
+
+    @staticmethod
+    def _align_bucket(bucket: dict, result: dict, ids: list):
+        """Pad previously-accumulated keys that are missing from *result*."""
+        for key in list(bucket.keys()):
+            if key in result:
+                continue
+            bucket[key].append([0] * len(ids))
+
+    def _iter_items(self):
+        for path in self.paths:
+            with open(path, "r", encoding="utf-8") as f:
+                for line in f:
+                    line = line.strip()
+                    if not line:
+                        continue
+                    yield json.loads(line)
+
+    def _flush(self, domains, shard_idx):
+        for domain, keys in domains.items():
+            idx = shard_idx[domain]
+
+            pp = self.config.preprocessing
+            original_sequences = keys.get("sequence", [])
+            mode = self.config.output.position_ids_mode
+
+            if mode == "doc_reset" and original_sequences:
+                keys["position_ids"] = [list(range(len(s))) for s in original_sequences]
+
+            keys = self._packer.apply(dict(keys), pp.max_packed_len, pp.truncation_mode)
+
+            tensors: Dict[str, List[torch.Tensor]] = {}
+            for key, ids_list in keys.items():
+                dt = _STR_TO_DTYPE.get(
+                    self.config.output.dtype.get(key, "int32"), torch.int32
+                )
+                tensors[key] = [
+                    torch.tensor(list(chain.from_iterable(ids_list)), dtype=dt)
+                ]
+
+            if mode == "continuous" and original_sequences:
+                pos_ids = self._position_id.generate(keys.get("sequence", []))
+                if pos_ids:
+                    tensors["position_ids"] = [torch.tensor(pos_ids, dtype=torch.int32)]
+
+            self._writer.save(self.output_dir, domain, idx, tensors)
+            shard_idx[domain] = idx + 1
+
+            first_key = "sequence" if "sequence" in tensors else next(iter(tensors))
+            tqdm.tqdm.write(
+                f"  saved {domain}/shard_{idx:04d}  "
+                f"({tensors[first_key][0].numel():,} tokens)"
+            )

astrai/preprocessing/position_id.py

@@ -0,0 +1,46 @@
+"""Position-id generation strategies for packed sequences.
+
+Each strategy takes the list of per-document token sequences after packing
+and returns a flat list of position ids (same total length as all
+sequences combined).  The pipeline wraps the result into a tensor and
+attaches it as ``position_ids``.
+"""
+
+from abc import ABC, abstractmethod
+from typing import List
+
+from astrai.factory import BaseFactory
+
+
+class PositionIdStrategy(ABC):
+    """Generate ``position_ids`` for packed sequences."""
+
+    @abstractmethod
+    def generate(self, sequences: List[List[int]]) -> List[int]:
+        raise NotImplementedError
+
+
+class PositionIdStrategyFactory(BaseFactory["PositionIdStrategy"]):
+    pass
+
+
+@PositionIdStrategyFactory.register("none")
+class NoPositionId(PositionIdStrategy):
+    def generate(self, sequences: List[List[int]]) -> List[int]:
+        return []
+
+
+@PositionIdStrategyFactory.register("doc_reset")
+class DocResetPositionId(PositionIdStrategy):
+    def generate(self, sequences: List[List[int]]) -> List[int]:
+        pos_ids = []
+        for seq in sequences:
+            pos_ids.extend(range(len(seq)))
+        return pos_ids
+
+
+@PositionIdStrategyFactory.register("continuous")
+class ContinuousPositionId(PositionIdStrategy):
+    def generate(self, sequences: List[List[int]]) -> List[int]:
+        total = sum(len(seq) for seq in sequences)
+        return list(range(total))

astrai/preprocessing/writer.py

@@ -0,0 +1,75 @@
+"""Storage writer strategies for pipeline output.
+
+The :class:`StoreWriter` abstraction decouples the pipeline from the
+concrete storage format (bin / h5).  The pipeline builds a ``{key:
+List[Tensor]}`` dict and delegates the write to the writer selected
+by ``output.storage_format``.
+"""
+
+import logging
+import os
+import shutil
+from abc import ABC, abstractmethod
+from typing import Dict, List
+
+import torch
+
+from astrai.factory import BaseFactory
+from astrai.serialization import save_bin, save_h5
+
+logger = logging.getLogger(__name__)
+
+
+class StoreWriter(ABC):
+    """Write pre-tokenized tensors to disk in a format-specific way."""
+
+    @abstractmethod
+    def save(
+        self,
+        output_dir: str,
+        domain: str,
+        shard_idx: int,
+        tensors: Dict[str, List[torch.Tensor]],
+    ) -> None: ...
+
+
+class StoreWriterFactory(BaseFactory["StoreWriter"]):
+    pass
+
+
+@StoreWriterFactory.register("bin")
+class BinWriter(StoreWriter):
+    def save(self, output_dir, domain, shard_idx, tensors):
+        shard_path = os.path.join(output_dir, domain, f"shard_{shard_idx:04d}")
+        try:
+            save_bin(shard_path, tensors)
+        except Exception:
+            if os.path.exists(shard_path):
+                shutil.rmtree(shard_path, ignore_errors=True)
+            logger.error(
+                "Failed to write shard %s/%s_%04d, cleaned up partial output",
+                domain,
+                "shard",
+                shard_idx,
+                exc_info=True,
+            )
+            raise
+
+
+@StoreWriterFactory.register("h5")
+class H5Writer(StoreWriter):
+    def save(self, output_dir, domain, shard_idx, tensors):
+        chunk_dir = os.path.join(output_dir, domain)
+        file_path = os.path.join(chunk_dir, f"data_{shard_idx:04d}.h5")
+        try:
+            save_h5(chunk_dir, f"data_{shard_idx:04d}", tensors)
+        except Exception:
+            if os.path.exists(file_path):
+                os.remove(file_path)
+            logger.error(
+                "Failed to write shard %s/data_%04d.h5, cleaned up partial output",
+                domain,
+                shard_idx,
+                exc_info=True,
+            )
+            raise

astrai/protocols.py

@@ -0,0 +1,21 @@
+"""Training component protocols — structural subtyping for optimizer/scheduler wrappers."""
+
+from typing import Any, Protocol, runtime_checkable
+
+
+@runtime_checkable
+class OptimizerProtocol(Protocol):
+    def step(self, closure=None): ...
+    def zero_grad(self): ...
+    @property
+    def param_groups(self) -> Any: ...
+    def state_dict(self) -> dict: ...
+    def load_state_dict(self, d: dict): ...
+
+
+@runtime_checkable
+class SchedulerProtocol(Protocol):
+    def step(self): ...
+    def state_dict(self) -> dict: ...
+    def load_state_dict(self, d: dict): ...
+    def get_last_lr(self): ...

astrai/serialization.py

@@ -1,83 +0,0 @@
-import json
-import time
-from pathlib import Path
-from typing import Any, Dict, Optional
-
-import safetensors.torch as st
-import torch
-import torch.distributed as dist
-
-from astrai.parallel.setup import get_rank
-
-
-class Checkpoint:
-    def __init__(
-        self,
-        state_dict: Dict[str, Any],
-        epoch: int = 0,
-        iteration: int = 0,
-        extra: Optional[Dict[str, Any]] = None,
-        meta: Optional[Dict[str, Any]] = None,
-    ):
-        self.state_dict = state_dict
-        self.epoch = epoch
-        self.iteration = iteration
-        self.extra = extra or {}
-        self.meta = meta or {}
-
-    def save(
-        self,
-        save_dir: str,
-    ) -> None:
-
-        save_path = Path(save_dir)
-        save_path.mkdir(parents=True, exist_ok=True)
-
-        rank = get_rank()
-        if rank == 0:
-            meta = {
-                "epoch": self.epoch,
-                "iteration": self.iteration,
-                "timestamp": time.time(),
-            }
-            meta.update(self.meta)
-            with open(save_path / "meta.json", "w") as f:
-                json.dump(meta, f, indent=2)
-
-            st.save_file(self.state_dict, save_path / "state_dict.safetensors")
-            if self.extra:
-                for key, value in self.extra.items():
-                    torch.save(value, save_path / f"{key}.pt")
-
-    @classmethod
-    def load(
-        cls,
-        save_dir: str,
-    ) -> "Checkpoint":
-
-        rank = get_rank()
-        save_path = Path(save_dir)
-
-        meta = {}
-        if rank == 0:
-            with open(Path(save_dir) / "meta.json", "r") as f:
-                meta = json.load(f)
-
-        if dist.is_initialized():
-            meta_list = [meta]
-            dist.broadcast_object_list(meta_list, src=0)
-            meta = meta_list[0]
-
-        state_dict = st.load_file(save_path / "state_dict.safetensors")
-
-        extra = {}
-        for f in save_path.iterdir():
-            if f.suffix == ".pt" and f.stem not in ("meta",):
-                extra[f.stem] = torch.load(f, map_location="cpu", weights_only=False)
-
-        return cls(
-            state_dict=state_dict,
-            epoch=meta["epoch"],
-            iteration=meta["iteration"],
-            extra=extra or None,
-        )

astrai/serialization/__init__.py

@@ -0,0 +1,43 @@
+"""Serialization utilities for models and datasets.
+
+This package re-exports checkpoint helpers and dataset storage helpers so
+that existing imports from ``astrai.serialization`` continue to work.
+"""
+
+from astrai.serialization.checkpoint import (
+    Checkpoint,
+    load_json,
+    load_model_config,
+    load_model_weights,
+    load_safetensors,
+    load_state_dict,
+    load_torch,
+    save_json,
+    save_model,
+    save_safetensors,
+    save_torch,
+)
+from astrai.serialization.dataset import (
+    load_bin,
+    load_h5,
+    save_bin,
+    save_h5,
+)
+
+__all__ = [
+    "Checkpoint",
+    "load_json",
+    "load_model_config",
+    "load_model_weights",
+    "load_safetensors",
+    "load_state_dict",
+    "load_torch",
+    "save_json",
+    "save_model",
+    "save_safetensors",
+    "save_torch",
+    "load_bin",
+    "load_h5",
+    "save_bin",
+    "save_h5",
+]

astrai/serialization/checkpoint.py

@@ -0,0 +1,204 @@
+"""Model checkpoint serialization helpers."""
+
+import io
+import json
+import os
+import time
+from dataclasses import dataclass, field
+from pathlib import Path
+from typing import Any, Dict, Optional, Union
+
+import safetensors.torch as st
+import torch
+import torch.distributed as dist
+
+from astrai.parallel.setup import get_rank
+
+_META_FILE = "meta.json"
+_CONFIG_FILE = "config.json"
+_WEIGHTS_FILE = "model.safetensors"
+
+
+def save_safetensors(state_dict: dict, path: Union[str, Path]):
+    st.save_file(state_dict, str(path))
+
+
+def load_safetensors(path: Union[str, Path], broadcast: bool = False) -> dict:
+    if not broadcast or not dist.is_initialized():
+        return st.load_file(str(path))
+
+    rank = get_rank()
+    if rank == 0:
+        state_dict = st.load_file(str(path))
+    else:
+        state_dict = {}
+    tmp = [state_dict]
+    dist.broadcast_object_list(tmp, src=0)
+    return tmp[0]
+
+
+def save_json(data: dict, path: Union[str, Path]):
+    with open(str(path), "w") as f:
+        json.dump(data, f, indent=2)
+
+
+def load_json(path: Union[str, Path], broadcast: bool = False) -> dict:
+    if not broadcast or not dist.is_initialized():
+        with open(str(path), "r") as f:
+            return json.load(f)
+
+    rank = get_rank()
+    if rank == 0:
+        with open(str(path), "r") as f:
+            data = json.load(f)
+    else:
+        data = {}
+    tmp = [data]
+    dist.broadcast_object_list(tmp, src=0)
+    return tmp[0]
+
+
+def save_torch(obj: Any, path: Union[str, Path]):
+    torch.save(obj, str(path))
+
+
+def load_torch(path: Union[str, Path], broadcast: bool = False) -> Any:
+    if not broadcast or not dist.is_initialized():
+        return torch.load(str(path), map_location="cpu", weights_only=False)
+
+    path = Path(path)
+    rank = get_rank()
+
+    if rank == 0:
+        with open(path, "rb") as f:
+            raw = f.read()
+        data_tensor = torch.frombuffer(bytearray(raw), dtype=torch.uint8)
+        num_bytes = torch.tensor([len(raw)], dtype=torch.long)
+    else:
+        num_bytes = torch.tensor([0], dtype=torch.long)
+
+    dist.broadcast(num_bytes, src=0)
+
+    if rank != 0:
+        data_tensor = torch.empty(num_bytes.item(), dtype=torch.uint8)
+
+    dist.broadcast(data_tensor, src=0)
+
+    buf = io.BytesIO(data_tensor.numpy().tobytes())
+    return torch.load(buf, map_location="cpu", weights_only=False)
+
+
+def save_model(config: dict, state_dict: dict, save_directory: str):
+    save_path = Path(save_directory)
+    save_path.mkdir(parents=True, exist_ok=True)
+    save_json(config, save_path / _CONFIG_FILE)
+    save_safetensors(state_dict, save_path / _WEIGHTS_FILE)
+
+
+def load_model_config(save_directory: str) -> dict:
+    return load_json(Path(save_directory) / _CONFIG_FILE)
+
+
+def load_model_weights(save_directory: str) -> dict:
+    return load_state_dict(Path(save_directory) / _WEIGHTS_FILE)
+
+
+def load_state_dict(path: Union[str, Path], broadcast: bool = False) -> dict:
+    path = Path(path)
+    if not broadcast or not dist.is_initialized():
+        return load_safetensors(path)
+
+    rank = get_rank()
+    if rank == 0:
+        state_dict = load_safetensors(path)
+        specs = [
+            (k, list(state_dict[k].shape), str(state_dict[k].dtype).split(".")[-1])
+            for k in sorted(state_dict)
+        ]
+    else:
+        state_dict = {}
+        specs = []
+
+    specs_list = [specs]
+    dist.broadcast_object_list(specs_list, src=0)
+    specs = specs_list[0]
+
+    for key, shape, dtype_name in specs:
+        dtype = getattr(torch, dtype_name)
+        if rank != 0:
+            tensor = torch.empty(shape, dtype=dtype, device="cpu")
+        else:
+            tensor = state_dict[key].contiguous().cpu()
+        dist.broadcast(tensor, src=0)
+        if rank != 0:
+            state_dict[key] = tensor
+    return state_dict
+
+
+@dataclass
+class Checkpoint:
+    state_dict: Dict[str, Any] = field(default_factory=dict)
+    epoch: int = 0
+    consumed_samples: int = 0
+    extra: Dict[str, Any] = field(default_factory=dict)
+    meta: Dict[str, Any] = field(default_factory=dict)
+    config: Dict[str, Any] = field(default_factory=dict)
+
+    def save(self, save_dir: str):
+        save_path = Path(save_dir)
+        save_path.mkdir(parents=True, exist_ok=True)
+
+        if get_rank() != 0:
+            return
+
+        meta = {
+            "epoch": self.epoch,
+            "consumed_samples": self.consumed_samples,
+            "timestamp": time.strftime("%Y-%m-%dT%H:%M:%S"),
+            **self.meta,
+        }
+        save_json(meta, save_path / _META_FILE)
+        save_json(self.config, save_path / _CONFIG_FILE)
+        save_safetensors(self.state_dict, save_path / _WEIGHTS_FILE)
+        for key, value in self.extra.items():
+            save_torch(value, save_path / f"{key}.pt")
+
+    @classmethod
+    def load(cls, save_dir: str, broadcast: bool = False) -> "Checkpoint":
+        save_path = Path(save_dir)
+
+        meta = load_json(save_path / _META_FILE, broadcast)
+        config = load_json(save_path / _CONFIG_FILE, broadcast)
+        state_dict = load_state_dict(save_path / _WEIGHTS_FILE, broadcast=broadcast)
+
+        extra = {}
+        for f in sorted(save_path.iterdir()):
+            if f.suffix == ".pt":
+                extra[f.stem] = load_torch(f, broadcast=broadcast)
+
+        return cls(
+            state_dict=state_dict,
+            epoch=meta.get("epoch", 0),
+            consumed_samples=meta.get("consumed_samples", 0),
+            extra=extra,
+            config=config,
+        )
+
+    @classmethod
+    def load_any(cls, save_dir: str, broadcast: bool = False) -> Optional["Checkpoint"]:
+        save_path = Path(save_dir)
+        meta_path = save_path / _META_FILE
+        weights_path = save_path / _WEIGHTS_FILE
+
+        if meta_path.exists():
+            return cls.load(save_dir, broadcast=broadcast)
+
+        if weights_path.exists():
+            state_dict = load_state_dict(weights_path, broadcast=broadcast)
+            config = {}
+            config_path = save_path / _CONFIG_FILE
+            if config_path.exists():
+                config = load_json(config_path, broadcast)
+            return cls(state_dict=state_dict, config=config)
+
+        return None

astrai/serialization/dataset.py

@@ -0,0 +1,73 @@
+"""Dataset storage serialization helpers (HDF5 / memory-mapped binary)."""
+
+import json
+import os
+from pathlib import Path
+from typing import Dict, List
+
+import h5py
+import numpy as np
+import torch
+from torch import Tensor
+
+
+def save_h5(file_path: str, file_name: str, tensor_group: Dict[str, List[Tensor]]):
+    os.makedirs(file_path, exist_ok=True)
+    full_file_path = os.path.join(file_path, f"{file_name}.h5")
+    with h5py.File(full_file_path, "w") as f:
+        for key, tensors in tensor_group.items():
+            grp = f.create_group(key)
+            for idx, tensor in enumerate(tensors):
+                arr = tensor.cpu().numpy()
+                grp.create_dataset(f"data_{idx}", data=arr)
+
+
+def load_h5(file_path: str, share_memory=True) -> Dict[str, List[Tensor]]:
+    tensor_group: Dict[str, List[Tensor]] = {}
+
+    root_path = Path(file_path)
+    h5_files = list(root_path.rglob("*.h5")) + list(root_path.rglob("*.hdf5"))
+
+    for h5_file in h5_files:
+        with h5py.File(h5_file, "r") as f:
+            for key in f.keys():
+                grp = f[key]
+                dsets = []
+                for dset_name in grp.keys():
+                    dset = grp[dset_name]
+                    tensor = torch.from_numpy(dset[:])
+                    if share_memory:
+                        tensor = tensor.share_memory_()
+                    dsets.append(tensor)
+
+                if tensor_group.get(key) is None:
+                    tensor_group[key] = []
+                tensor_group[key].extend(dsets)
+
+    return tensor_group
+
+
+def save_bin(file_path: str, tensor_group: Dict[str, List[Tensor]]):
+    os.makedirs(file_path, exist_ok=True)
+    meta = {}
+    for key, tensors in tensor_group.items():
+        cat = torch.cat(tensors, dim=0)
+        meta[key] = {"shape": list(cat.shape), "dtype": str(cat.dtype).split(".")[-1]}
+        np.asarray(cat.cpu().numpy()).tofile(os.path.join(file_path, f"{key}.bin"))
+    with open(os.path.join(file_path, "meta.json"), "w") as f:
+        json.dump(meta, f)
+
+
+def load_bin(file_path: str) -> Dict[str, List[Tensor]]:
+    with open(os.path.join(file_path, "meta.json"), "r") as f:
+        meta = json.load(f)
+    segments: Dict[str, List[Tensor]] = {}
+    for key, info in meta.items():
+        arr = np.memmap(
+            os.path.join(file_path, f"{key}.bin"),
+            dtype=info["dtype"],
+            mode="r+",
+            shape=tuple(info["shape"]),
+        )
+        segments[key] = [torch.from_numpy(arr)]
+    return segments

astrai/tokenize/chat_template.py

@@ -1,13 +1,10 @@
-from dataclasses import dataclass
 from typing import Any, Dict, List, Optional
 
 from jinja2 import Template
 
-# Message type for chat messages
 type MessageType = Dict[str, Any]
 
 
-@dataclass
 class ChatTemplate:
     """A chat template with Jinja2 rendering support.
 
@@ -15,23 +12,24 @@ class ChatTemplate:
         name: Unique identifier for the template.
         template_str: Jinja2 template string.
         description: Optional description.
-        default_variables: Optional dictionary of default variable values
+        default_variables: Optional dictionary of default variable values.
-            that will be passed to the template if not overridden during rendering.
         special_tokens: Optional dictionary mapping token names to their string values.
-            These tokens are automatically added to the template variables.
     """
 
-    name: str
+    def __init__(
-    template_str: str
+        self,
-    description: str = ""
+        name: str = "",
-    default_variables: Dict[str, Any] = None
+        template_str: str = "",
-    special_tokens: Dict[str, str] = None
+        description: str = "",
-
+        default_variables: Optional[Dict[str, Any]] = None,
-    def __post_init__(self):
+        special_tokens: Optional[Dict[str, str]] = None,
-        if self.default_variables is None:
+    ):
-            self.default_variables = {}
+        self.name = name
-        if self.special_tokens is None:
+        self.template_str = template_str
-            self.special_tokens = {}
+        self.description = description
+        self.default_variables = default_variables or {}
+        self.special_tokens = special_tokens or {}
+        self._compiled: Template = Template(template_str)
 
     @classmethod
     def from_string(
@@ -43,7 +41,7 @@ class ChatTemplate:
     ) -> "ChatTemplate":
         """Create a ChatTemplate instance directly from a template string."""
         return cls(
-            name="",  # empty name for ad‑hoc templates
+            name="",
             template_str=template_str,
             description=description,
             default_variables=default_variables,
@@ -73,5 +71,4 @@ class ChatTemplate:
         if system_prompt is not None:
             variables["system_prompt"] = system_prompt
 
-        jinja_template = Template(self.template_str)
+        return self._compiled.render(**variables)
-        return jinja_template.render(**variables)

astrai/trainer/__init__.py

@@ -1,4 +1,3 @@
-from astrai.trainer.optim import Muon
 from astrai.trainer.schedule import BaseScheduler, SchedulerFactory
 from astrai.trainer.strategy import BaseStrategy, StrategyFactory
 from astrai.trainer.train_callback import (
@@ -10,8 +9,6 @@ from astrai.trainer.trainer import Trainer
 __all__ = [
     # Main trainer
     "Trainer",
-    # Optimizer
-    "Muon",
     # Strategy factory
     "StrategyFactory",
     "BaseStrategy",

astrai/trainer/metric_util.py

@@ -1,42 +1,25 @@
-from typing import Any, Callable, Dict
+from typing import Dict
 
 import torch
 import torch.nn as nn
 
 
-def _grad_stat(
+def grad_norm(model: nn.Module, per_param: bool = False) -> float | Dict[str, float]:
-    model: nn.Module, fn: Callable[[torch.Tensor], Any], default: Any
+    grads = [p.grad.detach() for p in model.parameters() if p.grad is not None]
-) -> dict:
+    if not grads:
-    results = {}
+        return 0.0
+
+    total_sq = torch.stack([g.pow(2).sum() for g in grads]).sum()
+    if per_param:
+        norms = {}
         for name, param in model.named_parameters():
-        results[name] = default
             if param.grad is not None:
-            results[name] = fn(param.grad.data)
+                norms[name] = param.grad.norm(2).item()
-    return results
+            else:
-
+                norms[name] = 0.0
-
+        norms["total"] = total_sq.sqrt().item()
-def grad_norm(model: nn.Module, norm_type: int = 2) -> Dict[str, float]:
+        return norms
-    return _grad_stat(model, lambda g: g.norm(norm_type).item(), 0.0)
+    return total_sq.sqrt().item()
-
-
-def grad_std(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.std().item(), 0.0)
-
-
-def grad_max(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.max().item(), -float("inf"))
-
-
-def grad_min(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.min().item(), float("inf"))
-
-
-def grad_mean(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.mean().item(), 0.0)
-
-
-def grad_nan_num(model: nn.Module) -> Dict[str, int]:
-    return _grad_stat(model, lambda g: g.isnan().sum().item(), 0)
 
 
 def ctx_get_loss(ctx):
@@ -52,24 +35,4 @@ def ctx_get_val_loss(ctx):
 
 
 def ctx_get_grad_norm(ctx):
-    return grad_norm(ctx.model)
+    return ctx.grad_norm
-
-
-def ctx_get_grad_std(ctx):
-    return grad_std(ctx.model)
-
-
-def ctx_get_grad_max(ctx):
-    return grad_max(ctx.model)
-
-
-def ctx_get_grad_min(ctx):
-    return grad_min(ctx.model)
-
-
-def ctx_get_grad_mean(ctx):
-    return grad_mean(ctx.model)
-
-
-def ctx_get_grad_nan_num(ctx):
-    return grad_nan_num(ctx.model)

astrai/trainer/optim.py

@@ -1,113 +0,0 @@
-import torch
-from torch.optim import Optimizer
-
-
-def _zeropower_via_newtonschulz(G: torch.Tensor, steps: int = 5):
-    assert G.ndim == 2
-    X = G.bfloat16()
-    scale = max(1, G.size(0) / G.size(1)) ** 0.5
-    X = X / (X.norm() + 1e-7) * scale
-    if steps == 0:
-        return X.type_as(G)
-    a, b, c = (3.4445, -4.7750, 2.0315)
-    for _ in range(steps):
-        A = X @ X.T
-        B = A @ X
-        X = a * X + b * B + c * (A @ B)
-    return X.type_as(G)
-
-
-class Muon(Optimizer):
-    def __init__(
-        self,
-        params,
-        lr: float = 2e-3,
-        momentum: float = 0.95,
-        weight_decay: float = 0.0,
-        nesterov: bool = True,
-        ns_steps: int = 5,
-        adamw_lr: float = None,
-        adamw_betas: tuple = (0.9, 0.95),
-        adamw_eps: float = 1e-8,
-        adamw_wd: float = 0.0,
-    ):
-        defaults = dict(
-            lr=lr,
-            momentum=momentum,
-            weight_decay=weight_decay,
-            nesterov=nesterov,
-            ns_steps=ns_steps,
-            adamw_lr=adamw_lr if adamw_lr is not None else lr * 0.1,
-            adamw_betas=adamw_betas,
-            adamw_eps=adamw_eps,
-            adamw_wd=adamw_wd,
-        )
-        super().__init__(params, defaults)
-
-    @torch.no_grad()
-    def step(self, closure=None):
-        loss = None
-        if closure is not None:
-            with torch.enable_grad():
-                loss = closure()
-        for group in self.param_groups:
-            for p in group["params"]:
-                if p.grad is None:
-                    continue
-                grad = p.grad
-                if grad.is_sparse:
-                    raise RuntimeError("Muon does not support sparse gradients")
-                if p.ndim >= 2:
-                    self._muon_update(p, grad, group)
-                else:
-                    self._adamw_update(p, grad, group)
-        return loss
-
-    def _muon_update(self, p, grad, group):
-        lr = group["lr"]
-        momentum = group["momentum"]
-        wd = group["weight_decay"]
-        nesterov = group["nesterov"]
-        ns_steps = group["ns_steps"]
-        state = self.state[p]
-
-        p.mul_(1 - lr * wd)
-
-        if nesterov:
-            grad = grad.add(p, alpha=wd)
-
-        if "momentum_buffer" not in state:
-            state["momentum_buffer"] = torch.zeros_like(grad)
-        buf = state["momentum_buffer"]
-        buf.lerp_(grad, 1 - momentum)
-
-        update = _zeropower_via_newtonschulz(buf, steps=ns_steps)
-        scale = max(1, p.size(0) / p.size(1)) ** 0.5
-        p.add_(update, alpha=-lr * scale)
-
-    def _adamw_update(self, p, grad, group):
-        lr = group["adamw_lr"]
-        betas = group["adamw_betas"]
-        eps = group["adamw_eps"]
-        wd = group["adamw_wd"]
-        state = self.state[p]
-
-        if not state:
-            state["step"] = 0
-            state["exp_avg"] = torch.zeros_like(p)
-            state["exp_avg_sq"] = torch.zeros_like(p)
-
-        state["step"] += 1
-        exp_avg, exp_avg_sq = state["exp_avg"], state["exp_avg_sq"]
-        beta1, beta2 = betas
-
-        exp_avg.lerp_(grad, 1 - beta1)
-        exp_avg_sq.lerp_(grad.square(), 1 - beta2)
-
-        step = state["step"]
-        bias1 = 1 - beta1**step
-        bias2 = 1 - beta2**step
-
-        p.mul_(1 - lr * wd)
-        denom = exp_avg_sq.sqrt().div_(bias2**0.5).add_(eps)
-        p.addcdiv_(exp_avg / bias1, denom, value=-lr)

astrai/trainer/schedule.py

@@ -2,7 +2,7 @@
 
 import math
 from abc import ABC, abstractmethod
-from typing import Any, Dict, List, Type
+from typing import Any, Dict, List
 
 from torch.optim.lr_scheduler import LRScheduler
 
@@ -31,7 +31,6 @@ class SchedulerFactory(BaseFactory["BaseScheduler"]):
     """Factory class for creating learning rate schedulers.
 
     Supports decorator-based registration for extensible scheduler types.
-    Also supports creation from ScheduleConfig objects.
 
     Example usage:
         @SchedulerFactory.register("custom")
@@ -41,33 +40,6 @@ class SchedulerFactory(BaseFactory["BaseScheduler"]):
         scheduler = SchedulerFactory.create("custom", optimizer, **kwargs)
     """
 
-    @classmethod
-    def _validate_component(cls, scheduler_cls: Type[BaseScheduler]) -> None:
-        """Validate that the scheduler class inherits from BaseScheduler."""
-        if not issubclass(scheduler_cls, BaseScheduler):
-            raise TypeError(f"{scheduler_cls.__name__} must inherit from BaseScheduler")
-
-    @classmethod
-    def create(
-        cls, optimizer, schedule_type: str = "none", **kwargs
-    ) -> "BaseScheduler":
-        """Create a scheduler instance by type name.
-
-        Args:
-            optimizer: PyTorch optimizer
-            schedule_type: Type of scheduler ("cosine", "sgdr")
-            **kwargs: Arguments passed to the scheduler constructor
-
-        Returns:
-            Scheduler instance
-        """
-        return super().create(schedule_type, optimizer, **kwargs)
-
-    @classmethod
-    def available_types(cls) -> list:
-        """Return list of registered scheduler type names."""
-        return cls.list_registered()
-
 
 # ----------- Scheduler implementations -----------
 
@@ -81,7 +53,7 @@ class CosineScheduler(BaseScheduler):
         optimizer,
         warmup_steps: int,
         lr_decay_steps: int,
-        min_rate: float = 0.05,
+        min_rate: float = 0.01,
         last_epoch: int = -1,
     ):
         self.warmup_steps = warmup_steps
@@ -93,11 +65,15 @@ class CosineScheduler(BaseScheduler):
     def get_lr(self) -> List[float]:
         # warmup
         if self.last_epoch < self.warmup_steps:
-            warmup_factor = max(self.min_rate, self.last_epoch / self.warmup_steps)
+            warmup_factor = max(
+                self.min_rate, self.last_epoch / max(self.warmup_steps, 1)
+            )
             return [base_lr * warmup_factor for base_lr in self.base_lrs]
 
         # cosine decay
-        decay_progress = (self.last_epoch - self.warmup_steps) / self.lr_decay_steps
+        decay_progress = (self.last_epoch - self.warmup_steps) / max(
+            self.lr_decay_steps, 1
+        )
         decay_progress = min(decay_progress, 1.0)
         cosine_decay = 0.5 * (1.0 + math.cos(math.pi * decay_progress))
         decay_factor = max(self.min_rate, cosine_decay)
@@ -132,7 +108,7 @@ class SGDRScheduler(BaseScheduler):
         optimizer,
         warmup_steps: int,
         cycle_length: int,
-        min_rate: float = 0.05,
+        min_rate: float = 0.01,
         t_mult: int = 2,
         last_epoch: int = -1,
     ):
@@ -146,7 +122,9 @@ class SGDRScheduler(BaseScheduler):
     def get_lr(self):
         # warmup
         if self.last_epoch < self.warmup_steps:
-            warmup_factor = max(self.min_rate, self.last_epoch / self.warmup_steps)
+            warmup_factor = max(
+                self.min_rate, self.last_epoch / max(self.warmup_steps, 1)
+            )
             return [base_lr * warmup_factor for base_lr in self.base_lrs]
 
         # SGDR
@@ -192,3 +170,66 @@ class SGDRScheduler(BaseScheduler):
         self.min_rate = state_dict.pop("min_rate")
         self.t_mult = state_dict.pop("t_mult")
         super().load_state_dict(state_dict)
+
+
+@SchedulerFactory.register("wsd")
+class WSDScheduler(BaseScheduler):
+    """WSD (Warmup-Stable-Decay) scheduler with sqrt cooldown.
+
+    warmup_steps:  linear warmup from min_rate to 1.0
+    stable_steps:   constant at base_lr
+    decay_steps:    sqrt decay from base_lr to min_rate
+    min_rate:       minimum lr as fraction of base_lr (default 0.0)
+    """
+
+    def __init__(
+        self,
+        optimizer,
+        warmup_steps: int,
+        stable_steps: int,
+        decay_steps: int,
+        min_rate: float = 0.01,
+        last_epoch: int = -1,
+    ):
+        self.warmup_steps = warmup_steps
+        self.stable_steps = stable_steps
+        self.decay_steps = decay_steps
+        self.min_rate = min_rate
+        self.total_steps = warmup_steps + stable_steps + decay_steps
+        super().__init__(optimizer, last_epoch)
+
+    def get_lr(self) -> List[float]:
+        if self.last_epoch < self.warmup_steps:
+            factor = max(self.min_rate, self.last_epoch / max(self.warmup_steps, 1))
+            return [base_lr * factor for base_lr in self.base_lrs]
+
+        offset = self.last_epoch - self.warmup_steps
+
+        if offset < self.stable_steps:
+            return list(self.base_lrs)
+
+        decay_ratio = (offset - self.stable_steps) / max(self.decay_steps, 1)
+        decay_ratio = min(decay_ratio, 1.0)
+        factor = (1.0 - self.min_rate) * (1.0 - decay_ratio) ** 2 + self.min_rate
+        return [base_lr * factor for base_lr in self.base_lrs]
+
+    def state_dict(self):
+        state = super().state_dict()
+        state.update(
+            {
+                "warmup_steps": self.warmup_steps,
+                "stable_steps": self.stable_steps,
+                "decay_steps": self.decay_steps,
+                "min_rate": self.min_rate,
+                "total_steps": self.total_steps,
+            }
+        )
+        return state
+
+    def load_state_dict(self, state_dict):
+        self.warmup_steps = state_dict.pop("warmup_steps")
+        self.stable_steps = state_dict.pop("stable_steps")
+        self.decay_steps = state_dict.pop("decay_steps")
+        self.min_rate = state_dict.pop("min_rate")
+        self.total_steps = state_dict.pop("total_steps")
+        super().load_state_dict(state_dict)

astrai/trainer/strategy.py

@@ -1,39 +1,28 @@
 """Training strategy implementations with factory pattern."""
 
-import copy
 from abc import ABC, abstractmethod
-from typing import Any, Callable, Dict, Union
+from typing import Callable, Dict, Union
 
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
 from torch import Tensor
-from torch.nn.parallel import DistributedDataParallel as DDP
 
 from astrai.factory import BaseFactory
 
 
-def unwrap_model(model: nn.Module) -> nn.Module:
+def create_ref_model(
-    """Unwrap DDP wrapper if present to get the original model."""
+    model_fn: Callable[[], nn.Module], state_dict: Dict[str, Tensor]
-    if isinstance(model, DDP):
+) -> nn.Module:
-        return model.module
+    """Create a frozen reference model from model_fn + full state dict."""
-    return model
+    ref_model = model_fn()
-
+    ref_model.load_state_dict(state_dict)
-
-def create_ref_model(model: nn.Module) -> nn.Module:
-    """Create a reference model for DPO/GRPO training.
-
-    Handles DDP-wrapped models safely by unwrapping first,
-    then creating a deep copy with frozen gradients.
-    """
-    original_model = unwrap_model(model)
-    ref_model = copy.deepcopy(original_model)
     ref_model.requires_grad_(False)
     ref_model.eval()
     return ref_model
 
 
-def move_to_device(batch: Dict[str, Tensor], device: str) -> Any:
+def move_to_device(batch: Dict[str, Tensor], device: str) -> Dict[str, Tensor]:
     """Move batch tensors to specified device with non-blocking transfer."""
     return {key: value.to(device, non_blocking=True) for key, value in batch.items()}
 
@@ -43,7 +32,7 @@ def get_logprobs(
     input_ids: Tensor,
     mask: Tensor,
     reduction: str,
-):
+) -> Tensor:
     """Compute token-wise log probabilities from model outputs.
 
     Args:
@@ -81,14 +70,35 @@ def get_logprobs(
         return token_logprobs * shifted_mask
 
 
+def make_doc_boundary_mask(position_ids: Tensor) -> Tensor:
+    S = position_ids.size(1)
+    device = position_ids.device
+    boundaries = position_ids[:, 1:] <= position_ids[:, :-1]
+    doc_ids = torch.cat(
+        [
+            torch.zeros(position_ids.size(0), 1, dtype=torch.long, device=device),
+            boundaries.long().cumsum(dim=1),
+        ],
+        dim=1,
+    )
+    same_doc = doc_ids.unsqueeze(-1) == doc_ids.unsqueeze(-2)
+    causal = torch.tril(torch.ones(S, S, dtype=torch.bool, device=device))
+    return (same_doc & causal).unsqueeze(1)
+
+
 class BaseStrategy(ABC):
     """Abstract base class for training strategies."""
 
     def __init__(
-        self, model: Union[Callable[..., Dict[str, Tensor]]], device: str, **kwargs
+        self,
+        model: Union[nn.Module, Callable[..., Dict[str, Tensor]]],
+        device: str,
+        **kwargs,
     ):
         self.model = model
         self.device = device
+        self.executor = kwargs.pop("executor", None)
+        self.model_fn = kwargs.pop("model_fn", None)
         self.extra_kwargs = kwargs
 
     @abstractmethod
@@ -122,32 +132,6 @@ class StrategyFactory(BaseFactory["BaseStrategy"]):
         strategy = StrategyFactory.create("custom", model, device)
     """
 
-    @classmethod
-    def _validate_component(cls, strategy_cls: type) -> None:
-        """Validate that the strategy class inherits from BaseStrategy."""
-        if not issubclass(strategy_cls, BaseStrategy):
-            raise TypeError(f"{strategy_cls.__name__} must inherit from BaseStrategy")
-
-    @classmethod
-    def create(cls, train_type: str, model, device: str, **kwargs) -> "BaseStrategy":
-        """Create a strategy instance based on training type.
-
-        Args:
-            train_type: Type of training ("seq", "sft", "dpo", "grpo")
-            model: Model instance for the strategy
-            device: Device to run the strategy on
-            **kwargs: Additional arguments passed to strategy constructor
-
-        Returns:
-            Strategy instance
-        """
-        return super().create(train_type, model, device, **kwargs)
-
-    @classmethod
-    def available_strategies(cls) -> list:
-        """Return list of registered strategy names."""
-        return cls.list_registered()
-
 
 # ============== Strategy Classes ==============
 # All strategies are registered at class definition time using the decorator
@@ -160,7 +144,13 @@ class SEQStrategy(BaseStrategy):
     Computes cross-entropy loss for next token prediction.
     """
 
-    def __init__(self, model, device, label_smoothing: float = 0.0, **kwargs):
+    def __init__(
+        self,
+        model: Union[nn.Module, Callable[..., Dict[str, Tensor]]],
+        device: str,
+        label_smoothing: float = 0.0,
+        **kwargs,
+    ):
         super().__init__(model, device, **kwargs)
         self.label_smoothing = label_smoothing
 
@@ -185,21 +175,31 @@ class SFTStrategy(BaseStrategy):
     Applies cross-entropy loss only to tokens where loss_mask is True.
     """
 
-    def __init__(self, model, device, label_smoothing: float = 0.0, **kwargs):
+    def __init__(
+        self,
+        model: Union[nn.Module, Callable[..., Dict[str, Tensor]]],
+        device: str,
+        label_smoothing: float = 0.0,
+        **kwargs,
+    ):
         super().__init__(model, device, **kwargs)
         self.label_smoothing = label_smoothing
 
     def compute_loss(self, batch: Dict[str, Tensor]) -> Tensor:
         batch = move_to_device(batch, self.device)
-        input_ids, target_ids, loss_mask = (
+        input_ids, target_ids, position_ids, loss_mask = (
             batch["input_ids"],
             batch["target_ids"],
+            batch["position_ids"],
             batch["loss_mask"],
         )
 
         ignore_index = -100
-        logits = self.model(input_ids=input_ids)["logits"]
+        input_mask = make_doc_boundary_mask(position_ids)
-        target_ids = target_ids.masked_fill(loss_mask == 0, ignore_index)
+        target_ids = target_ids.masked_fill(~loss_mask, ignore_index)
+        logits = self.model(
+            input_ids=input_ids, position_ids=position_ids, input_mask=input_mask
+        )["logits"]
 
         loss = F.cross_entropy(
             input=logits.flatten(0, 1).float(),
@@ -228,7 +228,9 @@ class DPOStrategy(BaseStrategy):
         **kwargs,
     ):
         super().__init__(model, device, **kwargs)
-        self.ref_model = create_ref_model(model)
+        self.ref_model = create_ref_model(
+            self.model_fn, self.executor.unwrap_model(model)
+        ).to(device=self.device)
         self.beta = beta
         self.reduction = reduction
 
@@ -282,7 +284,9 @@ class GRPOStrategy(BaseStrategy):
         **kwargs,
     ):
         super().__init__(model, device, **kwargs)
-        self.ref_model = create_ref_model(model)
+        self.ref_model = create_ref_model(
+            self.model_fn, self.executor.unwrap_model(model)
+        ).to(device=self.device)
         self.clip_eps = clip_eps
         self.kl_coef = kl_coef
         self.group_size = group_size
@@ -292,8 +296,7 @@ class GRPOStrategy(BaseStrategy):
 
     def sync_ref_model(self):
         """Copy current model weights to ref model."""
-        ref_state = self.model.state_dict()
+        self.ref_model.load_state_dict(self.executor.unwrap_model(self.model))
-        self.ref_model.load_state_dict(ref_state)
 
     def compute_loss(self, batch: Dict[str, Tensor]) -> Tensor:
         self._step += 1

astrai/trainer/train_callback.py

@@ -1,28 +1,23 @@
 import json
 import logging
 import os
+import sys
 import time
 from pathlib import Path
-from typing import Callable, List, Optional, Protocol, runtime_checkable
+from typing import IO, Callable, List, Optional, Protocol, runtime_checkable
 
 import torch
 import torch.distributed as dist
 import torch.nn as nn
-from torch.nn.utils import clip_grad_norm_
 from torch.utils.checkpoint import checkpoint as torch_checkpoint
 from tqdm import tqdm
 
 from astrai.factory import BaseFactory
 from astrai.parallel import only_on_rank
-from astrai.parallel.setup import get_current_device
+from astrai.parallel.setup import get_current_device, get_rank
 from astrai.serialization import Checkpoint
 from astrai.trainer.metric_util import (
-    ctx_get_grad_max,
-    ctx_get_grad_mean,
-    ctx_get_grad_min,
-    ctx_get_grad_nan_num,
     ctx_get_grad_norm,
-    ctx_get_grad_std,
     ctx_get_loss,
     ctx_get_lr,
     ctx_get_val_loss,
@@ -50,18 +45,15 @@ class TrainCallback(Protocol):
     def on_epoch_end(self, context: TrainContext):
         """Called at the end of each epoch."""
 
-    def on_step_begin(self, context: TrainContext):
-        """Called at the beginning of each step."""
-
-    def on_step_end(self, context: TrainContext):
-        """Called at the end of each step."""
-
     def on_batch_begin(self, context: TrainContext):
         """Called at the beginning of each batch."""
 
     def on_batch_end(self, context: TrainContext):
         """Called at the end of each batch."""
 
+    def on_optimizer_step(self, context: TrainContext):
+        """Called on every optimizer step (sync step only)."""
+
     def on_error(self, context: TrainContext):
         """Called when an error occurs during training."""
 
@@ -87,8 +79,10 @@ class GradientClippingCallback(TrainCallback):
     def __init__(self, max_grad_norm: float):
         self.max_grad_norm = max_grad_norm
 
-    def on_step_begin(self, context: TrainContext):
+    def on_optimizer_step(self, context: TrainContext):
-        clip_grad_norm_(context.model.parameters(), self.max_grad_norm)
+        context.grad_norm = context.executor.clip_grad_norm(
+            context.model, self.max_grad_norm
+        )
 
 
 @CallbackFactory.register("gradient_checkpointing")
@@ -139,51 +133,41 @@ class CheckpointCallback(TrainCallback):
         save_dir: str,
         interval: int,
         weight_only: bool = False,
-        state_dict_fn: Optional[Callable[[nn.Module], dict]] = None,
         save_extra_fn: Optional[Callable[["TrainContext"], dict]] = None,
-        load_extra_fn: Optional[Callable[[dict, "TrainContext"], None]] = None,
     ):
         self.save_dir = save_dir
         self.interval = interval
         self.weight_only = weight_only
-        self.state_dict_fn = state_dict_fn
         self.save_extra_fn = save_extra_fn or CheckpointCallback.save_extra
-        self.load_extra_fn = load_extra_fn or CheckpointCallback.load_extra
+        self.last_ckpt_step = 0
-        self.last_ckpt_iter = 0
 
-    @only_on_rank(0)
     def _save_checkpoint(self, context: TrainContext):
-        save_path = os.path.join(
+        state_dict = context.executor.unwrap_model(context.model)
-            self.save_dir, f"epoch_{context.epoch}_iter_{context.iteration}"
+        self.last_ckpt_step = context.optimizer_step
-        )
-        state_dict = (
-            self.state_dict_fn(context.model)
-            if self.state_dict_fn
-            else context.model.state_dict()
-        )
 
+        if get_rank() == 0:
+            save_path = os.path.join(
+                self.save_dir,
+                f"epoch_{context.epoch}_step_{context.optimizer_step}",
+            )
             extra = self.save_extra_fn(context)
+            meta = context.config.to_dict()
             context.checkpoint = Checkpoint(
                 state_dict=state_dict,
                 epoch=context.epoch,
-            iteration=context.iteration,
+                consumed_samples=context.consumed_samples,
+                config=context.model_config,
                 extra=extra,
-            meta=context.config.to_dict(),
+                meta=meta,
             )
-
             context.checkpoint.save(save_path)
-        self.last_ckpt_iter = context.iteration
-
-    def on_train_begin(self, context: TrainContext):
-        if context.checkpoint and context.checkpoint.extra:
-            self.load_extra_fn(context.checkpoint.extra, context)
 
     def on_batch_end(self, context: TrainContext):
-        if context.iteration - self.last_ckpt_iter >= self.interval:
+        if context.optimizer_step - self.last_ckpt_step >= self.interval:
             self._save_checkpoint(context)
 
     def on_train_end(self, context: TrainContext):
-        if context.iteration != self.last_ckpt_iter:
+        if context.optimizer_step != self.last_ckpt_step:
             self._save_checkpoint(context)
 
     def on_error(self, context: TrainContext):
@@ -198,12 +182,6 @@ class CheckpointCallback(TrainCallback):
                 extra[name] = obj.state_dict()
         return extra
 
-    @staticmethod
-    def load_extra(extra: dict, context: TrainContext):
-        for name in CheckpointCallback.extra_keys:
-            if name in extra:
-                getattr(context, name).load_state_dict(extra[name])
-
 
 @CallbackFactory.register("progress_bar")
 class ProgressBarCallback(TrainCallback):
@@ -211,28 +189,37 @@ class ProgressBarCallback(TrainCallback):
     Progress bar callback for trainer.
     """
 
-    def __init__(self, num_epoch: int):
+    def __init__(
+        self, num_epoch: int, log_interval: int = 100, file: Optional[IO[str]] = None
+    ):
         self.num_epoch = num_epoch
+        self.log_interval = log_interval
+        self.file = file
         self.progress_bar: tqdm = None
 
     @only_on_rank(0)
     def on_epoch_begin(self, context: TrainContext):
+        total_steps = len(context.dataloader) // context.executor.grad_accum_steps
         self.progress_bar = tqdm(
-            context.dataloader,
+            total=total_steps,
             desc=f"Epoch {context.epoch + 1}/{self.num_epoch}",
             dynamic_ncols=True,
+            file=self.file or sys.stdout,
         )
 
     @only_on_rank(0)
-    def on_batch_end(self, context: TrainContext):
+    def on_optimizer_step(self, context: TrainContext):
+        self.progress_bar.update(1)
         postfix = {
+            "step": context.optimizer_step,
             "loss": f"{context.loss:.4f}",
             "lr": f"{context.optimizer.param_groups[-1]['lr']:.2e}",
         }
-        if context.val_loss > 0:
+        if context.grad_norm is not None:
+            postfix["grad_norm"] = f"{context.grad_norm:.2f}"
+        if context.val_loss is not None:
             postfix["val_loss"] = f"{context.val_loss:.4f}"
         self.progress_bar.set_postfix(postfix)
-        self.progress_bar.update(1)
 
     @only_on_rank(0)
     def on_epoch_end(self, context: TrainContext):
@@ -241,19 +228,20 @@ class ProgressBarCallback(TrainCallback):
             self.progress_bar.close()
 
 
-@CallbackFactory.register("metric_logger")
+@CallbackFactory.register("metric")
-class MetricLoggerCallback(TrainCallback):
+class MetricCallback(TrainCallback):
     def __init__(
         self,
         log_dir: str,
         save_interval: int,
-        log_interval: int = 10,
         metrics: List[str] = None,
+        val_step: int = 0,
     ):
-        self.last_log_iter = 0
+        self.last_log_flush_step = 0
         self.save_interval = save_interval
-        self.log_interval = log_interval
         self.metrics = metrics or ["loss", "lr"]
+        self.val_step = val_step
+        self._next_val_step = 0
 
         self.log_dir = Path(log_dir) if log_dir else Path.cwd() / "logs"
         self.log_dir.mkdir(parents=True, exist_ok=True)
@@ -265,53 +253,28 @@ class MetricLoggerCallback(TrainCallback):
             "lr": ctx_get_lr,
             "val_loss": ctx_get_val_loss,
             "grad_norm": ctx_get_grad_norm,
-            "grad_std": ctx_get_grad_std,
-            "grad_max": ctx_get_grad_max,
-            "grad_min": ctx_get_grad_min,
-            "grad_mean": ctx_get_grad_mean,
-            "grad_nan_num": ctx_get_grad_nan_num,
         }
 
-    def _get_log_data(self, context: TrainContext):
+    def _metrics(self, context: TrainContext, names):
         return {
-            "timestamp": time.strftime("%Y-%m-%d %H:%M:%S"),
+            m: self._metric_funcs[m](context)
-            "epoch": context.epoch,
+            for m in names
-            "iter": context.iteration,
+            if self._metric_funcs[m](context) is not None
-            **{m: self._metric_funcs[m](context) for m in self.metrics},
         }
 
     @only_on_rank(0)
-    def _add_log(self, log_data):
+    def _append(self, event_type: str, context: TrainContext, **extra):
-        self.log_cache.append(log_data)
+        entry = {
+            "type": event_type,
+            "timestamp": time.strftime("%Y-%m-%dT%H:%M:%S"),
+            "epoch": context.epoch,
+            "step": context.optimizer_step,
+            "consumed_samples": context.consumed_samples,
+            **extra,
+        }
+        self.log_cache.append(entry)
 
-    @only_on_rank(0)
+    def _run_validation(self, context: TrainContext) -> float:
-    def _save_log(self, epoch, iter):
-        log_file = self.log_dir / f"epoch_{epoch}_iter_{iter}_metric.jsonl"
-
-        with open(log_file, "w") as f:
-            for log in self.log_cache:
-                f.write(json.dumps(log) + "\n")
-
-    def on_batch_end(self, context):
-        if context.iteration % self.log_interval == 0:
-            log_data = self._get_log_data(context)
-            self._add_log(log_data)
-
-        if context.iteration - self.last_log_iter >= self.save_interval:
-            self._save_log(context.epoch, context.iteration)
-            self.last_log_iter = context.iteration
-
-    def on_train_end(self, context):
-        if context.iteration != self.last_log_iter:
-            self._save_log(context.epoch, context.iteration)
-
-    def on_error(self, context):
-        self._save_log(context.epoch, context.iteration)
-
-
-@CallbackFactory.register("validation")
-class ValidationCallback(TrainCallback):
-    def _run_validation(self, context: TrainContext):
         context.model.eval()
 
         total_loss = 0.0
@@ -323,27 +286,49 @@ class ValidationCallback(TrainCallback):
                 total_loss += loss.item()
                 num_batches += 1
 
+        if context.world_size > 1 and dist.is_initialized():
+            stats = torch.tensor(
+                [total_loss, float(num_batches)], device=get_current_device()
+            )
+            dist.all_reduce(stats, op=dist.ReduceOp.SUM)
+            avg_loss = (stats[0] / stats[1]).item()
+        else:
             avg_loss = total_loss / max(num_batches, 1)
 
-        if context.world_size > 1 and dist.is_initialized():
-            loss_tensor = torch.tensor([avg_loss], device=get_current_device())
-            dist.all_reduce(loss_tensor, op=dist.ReduceOp.AVG)
-            avg_loss = loss_tensor.item()
-
-        context.val_loss = avg_loss
         context.model.train()
+        return avg_loss
 
-        step_count = context.iteration // context.config.grad_accum_steps
+    @only_on_rank(0)
-        logger.info(
+    def _flush(self, epoch, step):
-            f"Epoch {context.epoch + 1}, Step {step_count}, Val Loss: {avg_loss:.4f}"
+        log_file = self.log_dir / f"epoch_{epoch}_step_{step}_metric.jsonl"
-        )
+        log_file.parent.mkdir(parents=True, exist_ok=True)
+        with open(log_file, "w") as f:
+            for log in self.log_cache:
+                f.write(json.dumps(log) + "\n")
 
-    def on_step_end(self, context: TrainContext):
+    def on_optimizer_step(self, context):
-        if context.val_dataloader is None:
+        if (
-            return
+            context.val_dataloader is not None
-        cfg = context.config
+            and self.val_step > 0
-        if cfg.val_step <= 0:
+            and context.optimizer_step >= self._next_val_step
-            return
+        ):
-        step_count = context.iteration // cfg.grad_accum_steps
+            context.val_loss = self._run_validation(context)
-        if step_count % cfg.val_step == 0:
+            self._next_val_step = context.optimizer_step + self.val_step
-            self._run_validation(context)
+            self._append("validation", context, val_loss=context.val_loss)
+
+        step_metrics = [m for m in self.metrics if m != "val_loss"]
+        self._append("step", context, **self._metrics(context, step_metrics))
+
+        if context.optimizer_step - self.last_log_flush_step >= self.save_interval:
+            self._flush(context.epoch, context.optimizer_step)
+            self.last_log_flush_step = context.optimizer_step
+
+    def on_epoch_end(self, context):
+        self._append("epoch", context)
+
+    def on_train_end(self, context):
+        if context.optimizer_step != self.last_log_flush_step:
+            self._flush(context.epoch, context.optimizer_step)
+
+    def on_error(self, context):
+        self._flush(context.epoch, context.optimizer_step)

astrai/trainer/train_context.py

@@ -1,15 +1,18 @@
 from dataclasses import dataclass, field
-from typing import Optional, Self
+from pathlib import Path
+from typing import Any, Dict, Optional, Self
 
+import torch
 import torch.nn as nn
-from torch.optim import Optimizer
+from torch.utils.data import DataLoader, random_split
-from torch.optim.lr_scheduler import LRScheduler
-from torch.utils.data import DataLoader
 
 from astrai.config.train_config import TrainConfig
 from astrai.dataset import ResumableDistributedSampler
+from astrai.model.components.lora import inject_lora
+from astrai.parallel.executor import BaseExecutor, ExecutorFactory
 from astrai.parallel.setup import get_current_device, get_rank, get_world_size
-from astrai.serialization import Checkpoint
+from astrai.protocols import OptimizerProtocol, SchedulerProtocol
+from astrai.serialization import Checkpoint, load_json
 from astrai.trainer.strategy import BaseStrategy, StrategyFactory
 
 
@@ -18,20 +21,31 @@ class TrainContext:
     model: nn.Module = field(default=None)
     strategy: BaseStrategy = field(default=None)
     dataloader: DataLoader = field(default=None)
-    optimizer: Optimizer = field(default=None)
+    optimizer: OptimizerProtocol = field(default=None)
-    scheduler: LRScheduler = field(default=None)
+    scheduler: SchedulerProtocol = field(default=None)
     checkpoint: Checkpoint = field(default=None)
     config: TrainConfig = field(default=None)
+    model_config: dict = field(default_factory=dict)
+    executor: BaseExecutor = field(default=None)
 
     epoch: int = field(default=0)
-    iteration: int = field(default=0)
+    consumed_samples: int = field(default=0)
     loss: float = field(default=0.0)
-    val_dataloader: DataLoader = field(default=None)
+    grad_norm: Optional[float] = field(default=None)
-    val_loss: float = field(default=0.0)
+    val_dataloader: Optional[DataLoader] = field(default=None)
+    val_loss: Optional[float] = field(default=None)
 
     world_size: int = field(default=1)
     rank: int = field(default=0)
-    kwargs: dict = field(default_factory=dict)
+    kwargs: Dict[str, Any] = field(default_factory=dict)
+
+    @property
+    def optimizer_step(self) -> int:
+        return self.consumed_samples // (
+            self.config.batch_per_device
+            * self.world_size
+            * self.config.grad_accum_steps
+        )
 
 
 class TrainContextBuilder:
@@ -40,49 +54,88 @@ class TrainContextBuilder:
         config: TrainConfig,
     ):
         self.config = config
-        self._checkpoint: Optional[Checkpoint] = None
+        self._resume_dir: Optional[str] = None
 
-    def with_checkpoint(self, checkpoint: Optional[Checkpoint]) -> Self:
+    def with_resume_dir(self, resume_dir: Optional[str]) -> Self:
-        self._checkpoint = checkpoint
+        self._resume_dir = resume_dir
         return self
 
     def build(self) -> TrainContext:
+        cfg = self.config
+        device = get_current_device()
+
+        executor = ExecutorFactory.create(
+            cfg.parallel_mode,
+            grad_accum_steps=cfg.grad_accum_steps,
+            **cfg.executor_kwargs,
+        )
+
+        model = cfg.model_fn()
+        model = model.to(device=device)
+
+        model_config = {}
+        if self._resume_dir:
+            config_path = Path(self._resume_dir) / "config.json"
+            if config_path.exists():
+                model_config = load_json(config_path)
+
+        if not model_config and hasattr(model, "config"):
+            model_config = model.config.to_dict()
+
         context = TrainContext(
-            model=self.config.model,
+            model=model,
             world_size=get_world_size(),
             rank=get_rank(),
-            config=self.config,
+            config=cfg,
+            model_config=model_config,
+            executor=executor,
         )
 
-        device = get_current_device()
+        if self._resume_dir:
-        context.model = context.model.to(device=device)
+            checkpoint = Checkpoint.load_any(self._resume_dir)
-
+            if checkpoint is not None:
-        if self.config.nprocs > 1 and self.config.parallel_wrapper:
+                model.load_state_dict(checkpoint.state_dict, strict=False)
-            context.model = self.config.parallel_wrapper(context.model)
+                if checkpoint.config:
-
+                    context.model_config = checkpoint.config
-        if self._checkpoint is not None:
+                context.epoch = checkpoint.epoch or cfg.start_epoch
-            context.epoch = max(self._checkpoint.epoch, self.config.start_epoch)
+                if checkpoint.consumed_samples > 0:
-            context.iteration = max(self._checkpoint.iteration, self.config.start_batch)
+                    context.consumed_samples = checkpoint.consumed_samples
-            context.model.load_state_dict(self._checkpoint.state_dict)
-            context.checkpoint = self._checkpoint
                 else:
-            context.checkpoint = Checkpoint(
+                    context.consumed_samples = cfg.start_samples * context.world_size
-                state_dict=context.model.state_dict(),
+                context.checkpoint = checkpoint
+
+        if cfg.lora is not None:
+            inject_lora(
+                model,
+                r=cfg.lora.r,
+                alpha=cfg.lora.alpha,
+                target_modules=set(cfg.lora.target_modules),
             )
 
-        context.optimizer = self.config.optimizer_fn(context.model)
+        context.optimizer = cfg.optimizer_fn(model)
-        context.scheduler = self.config.scheduler_fn(context.optimizer)
+        context.scheduler = cfg.scheduler_fn(context.optimizer)
 
-        cfg = self.config
+        train_dataset = cfg.dataset
-        sampler_offset = context.iteration * cfg.batch_per_device
+        val_dataset = cfg.val_dataset
+
+        if val_dataset is None and cfg.val_split is not None:
+            n_total = len(cfg.dataset)
+            n_val = max(1, int(n_total * cfg.val_split))
+            n_train = n_total - n_val
+            generator = torch.Generator().manual_seed(cfg.random_seed)
+            train_dataset, val_dataset = random_split(
+                cfg.dataset, [n_train, n_val], generator=generator
+            )
+
+        sampler_offset = context.consumed_samples // context.world_size
         sampler = ResumableDistributedSampler(
-            data_source=cfg.dataset,
+            data_source=train_dataset,
             start_epoch=context.epoch,
             start_iter=sampler_offset,
             seed=cfg.random_seed,
         )
         context.dataloader = DataLoader(
-            cfg.dataset,
+            train_dataset,
             batch_size=cfg.batch_per_device,
             sampler=sampler,
             num_workers=cfg.num_workers,
@@ -90,16 +143,16 @@ class TrainContextBuilder:
             prefetch_factor=cfg.prefetch_factor,
         )
 
-        if cfg.val_dataset is not None:
+        if val_dataset is not None:
             val_sampler = ResumableDistributedSampler(
-                data_source=cfg.val_dataset,
+                data_source=val_dataset,
                 start_epoch=0,
                 start_iter=0,
                 seed=cfg.random_seed,
                 shuffle=False,
             )
             context.val_dataloader = DataLoader(
-                cfg.val_dataset,
+                val_dataset,
                 batch_size=cfg.batch_per_device,
                 sampler=val_sampler,
                 num_workers=cfg.num_workers,
@@ -107,11 +160,30 @@ class TrainContextBuilder:
                 prefetch_factor=cfg.prefetch_factor,
             )
 
+        context.model, context.optimizer, context.dataloader, context.scheduler = (
+            executor.prepare(
+                model,
+                context.optimizer,
+                context.dataloader,
+                context.scheduler,
+            )
+        )
+
+        if context.checkpoint and context.checkpoint.extra:
+            extra = context.checkpoint.extra
+            for name in ("optimizer", "scheduler"):
+                if name in extra:
+                    obj = getattr(context, name, None)
+                    if obj is not None:
+                        obj.load_state_dict(extra[name])
+
         context.strategy = StrategyFactory.create(
+            cfg.strategy,
             model=context.model,
-            train_type=self.config.strategy,
             device=device,
-            **self.config.extra_kwargs,
+            executor=executor,
+            model_fn=cfg.model_fn,
+            **cfg.extra_kwargs,
         )
 
         return context

astrai/trainer/trainer.py

@@ -3,7 +3,6 @@ from typing import List, Optional
 
 from astrai.config import TrainConfig
 from astrai.parallel.setup import spawn_parallel_fn
-from astrai.serialization import Checkpoint
 from astrai.trainer.train_callback import (
     CallbackFactory,
     TrainCallback,
@@ -34,12 +33,16 @@ class Trainer:
                 "checkpoint",
                 cfg.ckpt_dir,
                 cfg.ckpt_interval,
-                state_dict_fn=cfg.state_dict_fn,
+            ),
+            CallbackFactory.create(
+                "metric",
+                log_dir=cfg.log_dir,
+                save_interval=cfg.ckpt_interval,
+                metrics=cfg.metrics,
+                val_step=cfg.val_step,
             ),
             CallbackFactory.create("progress_bar", cfg.n_epoch),
-            CallbackFactory.create("metric_logger", cfg.ckpt_dir, cfg.ckpt_interval),
             CallbackFactory.create("gradient_clipping", cfg.max_grad_norm),
-            CallbackFactory.create("validation"),
         ]
         return callbacks
 
@@ -49,33 +52,36 @@ class Trainer:
             if method:
                 method(context)
 
-    def _trainer_loop(self, checkpoint: Optional[Checkpoint] = None):
+    def _trainer_loop(self, resume_dir: Optional[str] = None):
-        cfg = self.train_config
+        context = (
-        context = TrainContextBuilder(cfg).with_checkpoint(checkpoint).build()
+            TrainContextBuilder(self.train_config).with_resume_dir(resume_dir).build()
+        )
+        executor = context.executor
         self._call_callbacks("on_train_begin", context)
 
         try:
             context.model.train()
-            grad_accum_steps = cfg.grad_accum_steps
 
-            for epoch in range(context.epoch, cfg.n_epoch):
+            for epoch in range(context.epoch, context.config.n_epoch):
                 context.epoch = epoch
                 self._call_callbacks("on_epoch_begin", context)
 
                 for batch in context.dataloader:
+                    with executor.accumulate(context.model):
                         self._call_callbacks("on_batch_begin", context)
                         loss = context.strategy(batch)
                         context.loss = loss.item()
-                    stand_loss = loss / grad_accum_steps
+                        stand_loss = loss / executor.grad_accum_steps
-                    stand_loss.backward()
+                        executor.backward(stand_loss)
-                    context.iteration += 1
+                        context.consumed_samples += (
+                            context.config.batch_per_device * context.world_size
+                        )
                         self._call_callbacks("on_batch_end", context)
 
-                    if context.iteration % grad_accum_steps == 0:
+                        if executor.sync_gradients:
-                        self._call_callbacks("on_step_begin", context)
+                            self._call_callbacks("on_optimizer_step", context)
                             context.optimizer.step()
                             context.optimizer.zero_grad()
-                        self._call_callbacks("on_step_end", context)
 
                             if context.scheduler:
                                 context.scheduler.step()
@@ -83,13 +89,13 @@ class Trainer:
                 self._call_callbacks("on_epoch_end", context)
 
         except Exception as e:
-            logger.error(f"Training failed: {str(e)}", exc_info=True)
+            logger.error("Training failed: %s", str(e), exc_info=True)
             self._call_callbacks("on_error", context)
             raise
         finally:
             self._call_callbacks("on_train_end", context)
 
-    def train(self, checkpoint: Optional[Checkpoint] = None):
+    def train(self, resume_dir: Optional[str] = None):
         cfg = self.train_config
         spawn_parallel_fn(
             self._trainer_loop,
@@ -99,5 +105,5 @@ class Trainer:
             master_port=cfg.master_port,
             device_type=cfg.device_type,
             start_method=cfg.start_method,
-            checkpoint=checkpoint,
+            resume_dir=resume_dir,
         )

docker-compose.yml

@@ -1,12 +1,13 @@
 services:
   server:
-    build: .
+    build:
-    image: astrai:latest
+      context: .
+      dockerfile: Dockerfile
+    user: "${UID:-1000}:${GID:-1000}"
     ports:
       - "8000:8000"
     volumes:
       - ./params:/app/params:ro
-      - ./checkpoints:/app/checkpoints
     command: python -m scripts.tools.server --port 8000 --device cuda
     deploy:
       resources:
@@ -25,13 +26,14 @@ services:
 
   server-cpu:
     profiles: [cpu]
-    build: .
+    build:
-    image: astrai:latest
+      context: .
+      dockerfile: Dockerfile
+    user: "${UID:-1000}:${GID:-1000}"
     ports:
       - "8000:8000"
     volumes:
       - ./params:/app/params:ro
-      - ./checkpoints:/app/checkpoints
     command: python -m scripts.tools.server --port 8000 --device cpu
     healthcheck:
       test: ["CMD", "curl", "-f", "http://localhost:8000/health"]

pyproject.toml

@@ -9,8 +9,8 @@ readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
     "h5py==3.15.1",
-    "numpy==2.3.2",
+    "numpy==2.4.4",
-    "torch==2.7.1",
+    "torch==2.11.0",
     "tokenizers==0.21.4",
     "tqdm==4.67.1",
     "safetensors==0.5.3",
@@ -37,7 +37,7 @@ dev = ["pytest==9.0.2", "ruff"]
 where = ["."]
 
 [tool.pip]
-extra-index-url = "https://download.pytorch.org/whl/cu126"
+extra-index-url = "https://download.pytorch.org/whl/cu128"
 
 [tool.setuptools.dynamic]
 version = { attr = "astrai.__version__" }

scripts/demo/stream_chat.py

@@ -1,3 +1,4 @@
+from argparse import ArgumentParser
 from pathlib import Path
 
 import torch
@@ -7,42 +8,82 @@ from astrai.model import AutoModel
 from astrai.tokenize import AutoTokenizer
 
 PROJECT_ROOT = Path(__file__).resolve().parents[2]
-PARAMETER_ROOT = Path(PROJECT_ROOT, "params")
+
+
+def parse_args():
+    parser = ArgumentParser(description="Interactive streaming chat")
+    parser.add_argument(
+        "--model_path",
+        type=Path,
+        default=PROJECT_ROOT / "params",
+        help="Path to model weights (params/ or checkpoint/epoch_N_step_M/)",
+    )
+    parser.add_argument(
+        "--temperature",
+        type=float,
+        default=0.8,
+        help="Sampling temperature (default: 0.8)",
+    )
+    parser.add_argument(
+        "--top_p",
+        type=float,
+        default=0.95,
+        help="Top-p sampling threshold",
+    )
+    parser.add_argument(
+        "--top_k",
+        type=int,
+        default=50,
+        help="Top-k sampling threshold",
+    )
+    parser.add_argument(
+        "--max_tokens",
+        type=int,
+        default=2048,
+        help="Maximum tokens to generate",
+    )
+    parser.add_argument(
+        "--system_prompt",
+        type=str,
+        default="You are a helpful assistant.",
+        help="Optional system prompt",
+    )
+    return parser.parse_args()
 
 
 def chat():
-    model = AutoModel.from_pretrained(PARAMETER_ROOT)
+    args = parse_args()
-    tokenizer = AutoTokenizer.from_pretrained(PARAMETER_ROOT)
+    model_path = args.model_path
-    model.to(device="cuda", dtype=torch.bfloat16)
 
-    messages = [{"role": "system", "content": "You are a helpful assistant."}]
+    model = AutoModel.from_pretrained(model_path)
+    tokenizer = AutoTokenizer.from_pretrained(model_path)
+    model.to(device="cuda", dtype=torch.bfloat16)
     engine = InferenceEngine(model=model, tokenizer=tokenizer)
 
+    messages = [{"role": "system", "content": args.system_prompt}]
+
     while True:
         query = input(">> ")
         if query == "!exit":
             break
 
-        # Add user message
         messages.append({"role": "user", "content": query})
 
-        # Generate response
         full_response = ""
         prompt = tokenizer.apply_chat_template(messages, tokenize=False)
 
         for token in engine.generate(
             prompt=prompt,
             stream=True,
-            max_tokens=2048,
+            max_tokens=args.max_tokens,
-            temperature=0.8,
+            temperature=args.temperature,
-            top_p=0.95,
+            top_p=args.top_p,
-            top_k=50,
+            top_k=args.top_k,
         ):
             print(token, end="", flush=True)
             full_response += token
 
         print()
-        # Add assistant response to messages
         messages.append({"role": "assistant", "content": full_response.strip()})
 
 

scripts/docker.sh

@@ -16,6 +16,7 @@ NC='\033[0m' # No Color
 IMAGE_NAME="astrai"
 IMAGE_TAG="latest"
 REGISTRY=""
+CONTAINER_ID=""
 
 # Print colored messages
 print_info() {
@@ -175,6 +176,10 @@ main() {
                 PORT="$2"
                 shift 2
                 ;;
+            --container)
+                CONTAINER_ID="$2"
+                shift 2
+                ;;
             --gpu)
                 GPU=true
                 shift
@@ -197,6 +202,7 @@ main() {
                 echo "  --dockerfile FILE  Dockerfile path (default: Dockerfile)"
                 echo "  --context PATH     Build context (default: .)"
                 echo "  --port PORT        Port for run (default: 8000)"
+                echo "  --container ID     Container ID for logs"
                 echo "  --gpu              Enable GPU support"
                 echo "  --help             Show this help message"
                 echo ""
@@ -205,6 +211,7 @@ main() {
                 echo "  $0 build --tag v1.0.0"
                 echo "  $0 run --port 8080"
                 echo "  $0 run --gpu"
+                echo "  $0 logs --container abc123"
                 echo "  $0 push --registry ghcr.io/username"
                 exit 0
                 ;;
@@ -237,7 +244,7 @@ main() {
             show_info
             ;;
         logs)
-            show_logs "$2"
+            show_logs "$CONTAINER_ID"
             ;;
         "")
             print_error "No command specified. Use --help for usage"

scripts/eval/analyze_weights.py

@@ -0,0 +1,307 @@
+"""SVD effective rank & weight statistics analysis for model checkpoints."""
+
+import argparse
+import json
+from pathlib import Path
+
+import safetensors.torch
+import torch
+
+
+def effective_rank_metrics(w: torch.Tensor) -> dict:
+    if w.ndim == 1:
+        return {"shape": tuple(w.shape), "is_1d": True}
+
+    w = w.float()
+    s = torch.linalg.svdvals(w)
+    s_sq = s**2
+    total = s_sq.sum()
+    cumsum = torch.cumsum(s_sq, dim=0) / total
+
+    min_dim = min(w.shape[0], w.shape[1])
+    er_90 = (cumsum < 0.90).sum().item() + 1
+    er_95 = (cumsum < 0.95).sum().item() + 1
+    er_99 = (cumsum < 0.99).sum().item() + 1
+
+    p = s_sq / total
+    p = p[p > 1e-30]
+    entropy = -(p * torch.log(p)).sum()
+    entropic_rank = torch.exp(entropy).item()
+
+    return {
+        "shape": tuple(w.shape),
+        "min_dim": min_dim,
+        "er_90": er_90,
+        "er_95": er_95,
+        "er_99": er_99,
+        "er_99_norm": er_99 / min_dim,
+        "er_95_norm": er_95 / min_dim,
+        "entropic_rank": entropic_rank,
+        "entropic_rank_norm": entropic_rank / min_dim,
+        "top1_ratio": s[0].item() / s.sum().item(),
+        "top5_ratio": s[:5].sum().item() / s.sum().item(),
+        "decay_ratio": s[-1].item() / s[0].item(),
+        "condition_number": s[0].item() / s[-1].item(),
+        "mean": w.mean().item(),
+        "std": w.std().item(),
+        "min": w.min().item(),
+        "max": w.max().item(),
+    }
+
+
+def format_header(headers: list[str], widths: list[int]) -> str:
+    return "".join(h.ljust(w) for h, w in zip(headers, widths))
+
+
+def format_row(values: list[str], widths: list[int]) -> str:
+    return "".join(v.ljust(w) for v, w in zip(values, widths))
+
+
+def group_by_component(results: dict[str, dict]) -> dict[str, list[dict]]:
+    groups: dict[str, list[dict]] = {}
+    for key, r in results.items():
+        parts = key.split(".")
+        if parts[0] == "layers" and len(parts) >= 3:
+            sub = parts[2:]
+            if sub[0] == "attention":
+                comp = f"attn.{sub[1]}"
+            elif sub[0] == "mlp":
+                comp = f"mlp.{sub[1]}"
+            elif sub[0] == "input_norm":
+                comp = "input_norm"
+            elif sub[0] == "post_attention_norm":
+                comp = "post_attn_norm"
+            else:
+                comp = ".".join(sub)
+        else:
+            comp = key
+        groups.setdefault(comp, []).append(r)
+    return groups
+
+
+def print_component_summary(results: dict[str, dict], title: str):
+    groups = group_by_component(results)
+    matrix_groups = {
+        k: [v for v in vs if not v.get("is_1d")]
+        for k, vs in groups.items()
+        if any(not v.get("is_1d") for v in vs)
+    }
+
+    widths = [20, 12, 12, 12, 12, 12]
+    print(f"\n{title}")
+    print(
+        format_header(
+            ["Component", "N", "ER@99%", "EntRank%", "Top1 σ(%)", "Cond. Num"], widths
+        )
+    )
+    print("-" * sum(widths))
+
+    for name in sorted(matrix_groups.keys()):
+        items = matrix_groups[name]
+        n = len(items)
+        print(
+            format_row(
+                [
+                    name,
+                    str(n),
+                    f"{sum(r['er_99_norm'] for r in items) / n:.4f}",
+                    f"{sum(r['entropic_rank_norm'] for r in items) / n:.4f}",
+                    f"{sum(r['top1_ratio'] for r in items) / n:.4f}",
+                    f"{sum(r['condition_number'] for r in items) / n:.1f}",
+                ],
+                widths,
+            )
+        )
+
+    all_er = [
+        r["er_99_norm"]
+        for vs in matrix_groups.values()
+        for r in vs
+        if "_norm" not in r or not r.get("is_1d")
+    ]
+    if all_er:
+        m = sum(all_er) / len(all_er)
+        print(f"\n  Overall Mean ER@99: {m:.4f} ({m * 100:.1f}% of dimension)")
+        if m > 0.85:
+            print("  → HIGH utilization: model near capacity → need more params")
+        elif m > 0.5:
+            print("  → MODERATE utilization: some headroom left")
+        else:
+            print("  → LOW utilization: significant unused capacity")
+
+
+def print_layer_grid(results: dict[str, dict]):
+    comps = [
+        "attn.q_proj",
+        "attn.k_proj",
+        "attn.v_proj",
+        "attn.o_proj",
+        "mlp.up",
+        "mlp.gate",
+        "mlp.down",
+    ]
+    widths = [6] + [10] * len(comps)
+    metric = "er_99_norm"
+
+    print(f"\n--- Per-Layer Effective Rank (99% energy) ---")
+    print(format_header(["Layer"] + comps, widths))
+    print("-" * sum(widths))
+
+    layer_data: dict[int, dict[str, dict]] = {}
+    for key, r in results.items():
+        parts = key.split(".")
+        if parts[0] != "layers":
+            continue
+        li = int(parts[1])
+        sub = parts[2:]
+        if sub[0] == "attention":
+            cname = f"attn.{sub[1]}"
+        elif sub[0] == "mlp":
+            cname = f"mlp.{sub[1]}"
+        else:
+            continue
+        layer_data.setdefault(li, {})[cname] = r
+
+    for li in sorted(layer_data):
+        values = [str(li)]
+        for c in comps:
+            v = layer_data[li].get(c, {}).get(metric, 0)
+            values.append(f"{v:.4f}")
+        print(format_row(values, widths))
+
+
+def print_weight_stats(results: dict[str, dict]):
+    groups = group_by_component(results)
+    widths = [20, 12, 12, 12, 12]
+    print(f"\n--- Weight Value Statistics ---")
+    print(format_header(["Component", "Mean", "Std", "Min", "Max"], widths))
+    print("-" * sum(widths))
+
+    for name in sorted(groups.keys()):
+        items = groups[name]
+        means = [r.get("mean", 0) for r in items]
+        stds = [r.get("std", 0) for r in items]
+        mins = [r.get("min", 0) for r in items]
+        maxs = [r.get("max", 0) for r in items]
+        g_mean = sum(means) / len(means)
+        g_std = sum(stds) / len(stds)
+        g_min = min(mins)
+        g_max = max(maxs)
+        print(
+            format_row(
+                [
+                    name,
+                    f"{g_mean:.6f}",
+                    f"{g_std:.6f}",
+                    f"{g_min:.6f}",
+                    f"{g_max:.6f}",
+                ],
+                widths,
+            )
+        )
+
+
+def print_params_summary(results: dict[str, dict]):
+    total_2d = sum(
+        r["shape"][0] * r["shape"][1] for r in results.values() if not r.get("is_1d")
+    )
+    total_1d = sum(r["shape"][0] for r in results.values() if r.get("is_1d"))
+    print(f"\n  Total 2D params: {total_2d:,}")
+    print(f"  Total 1D params: {total_1d:,}")
+    print(f"  Total params:     {total_2d + total_1d:,}")
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="SVD effective rank & weight statistics of a model checkpoint."
+    )
+    parser.add_argument(
+        "--ckpt_dir",
+        type=str,
+        required=True,
+        help="Path to checkpoint directory (containing model.safetensors + config.json).",
+    )
+    parser.add_argument(
+        "--compare",
+        type=str,
+        nargs="*",
+        help="Additional checkpoint directories to compare against.",
+    )
+    parser.add_argument(
+        "--no_svd",
+        action="store_true",
+        help="Skip SVD analysis, only show weight statistics (mean/std/min/max).",
+    )
+    args = parser.parse_args()
+
+    def analyze_one(ckpt_dir: str, label: str):
+        ckpt_dir = Path(ckpt_dir)
+        weights_path = ckpt_dir / "model.safetensors"
+        if not weights_path.exists():
+            print(f"ERROR: {weights_path} not found")
+            return {}
+
+        meta = {}
+        meta_path = ckpt_dir / "meta.json"
+        if meta_path.exists():
+            with open(meta_path) as f:
+                meta = json.load(f)
+
+        print(f"\n{'=' * 70}")
+        print(f"  {label}: {ckpt_dir}")
+        if meta:
+            print(
+                f"  Iteration: {meta.get('iteration', '?')}, "
+                f"Strategy: {meta.get('strategy', '?')}, "
+                f"nprocs={meta.get('nprocs', '?')}"
+            )
+        print(f"{'=' * 70}")
+
+        print(f"Loading weights...")
+        sd = safetensors.torch.load_file(str(weights_path))
+        print(f"  {len(sd)} keys loaded")
+
+        weight_keys = [
+            k
+            for k in sd
+            if ".weight" in k and "rotary_embedding" not in k and "freqs_cis" not in k
+        ]
+
+        results = {}
+        if not args.no_svd:
+            print(f"Computing SVD on {len(weight_keys)} tensors...")
+            for i, k in enumerate(sorted(weight_keys)):
+                print(f"  [{i + 1}/{len(weight_keys)}] {k:<60s}", end="\r")
+                results[k] = effective_rank_metrics(sd[k])
+            print()
+        else:
+            print(f"Computing stats on {len(weight_keys)} tensors (no SVD)...")
+            for i, k in enumerate(sorted(weight_keys)):
+                t = sd[k]
+                results[k] = {
+                    "shape": tuple(t.shape),
+                    "is_1d": t.ndim == 1,
+                    "mean": t.float().mean().item(),
+                    "std": t.float().std().item(),
+                    "min": t.float().min().item(),
+                    "max": t.float().max().item(),
+                }
+
+        print_params_summary(results)
+        if not args.no_svd:
+            print_component_summary(
+                results, "\n=== SVD Effective Rank by Component ==="
+            )
+            print_layer_grid(results)
+        print_weight_stats(results)
+        return results
+
+    analyze_one(args.ckpt_dir, "Primary")
+
+    if args.compare:
+        for cdir in args.compare:
+            analyze_one(cdir, "Compare")
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_humaneval.py

@@ -0,0 +1,393 @@
+"""HumanEval benchmark — functional pipeline design.
+
+Pipeline:
+    load -> generate -> extract -> test -> score -> report
+
+Each stage is a pure function (except GPU/CPU-bound I/O stages).
+Config is a single dataclass; side effects are isolated at pipeline boundaries.
+"""
+
+import argparse
+import itertools
+import json
+import os
+import re
+import subprocess
+import sys
+from dataclasses import dataclass
+from math import prod
+from typing import Dict, Iterator, List, Optional, Sequence, Tuple
+
+import numpy as np
+import torch
+import tqdm
+
+from astrai.inference import InferenceEngine
+from astrai.model import AutoModel
+from astrai.tokenize import AutoTokenizer
+
+# ---------------------------------------------------------------------------
+# Config
+# ---------------------------------------------------------------------------
+
+HUMANEVAL_URL = (
+    "https://github.com/openai/human-eval/raw/master/data/HumanEval.jsonl.gz"
+)
+
+STOP_SEQUENCES = [
+    "\nclass ",
+    "\ndef ",
+    "\n# ",
+    "\nif __name__",
+    "\nprint(",
+    "\n\n\n",
+]
+
+
+@dataclass
+class EvalConfig:
+    param_path: str = "./params"
+    data_path: str = "./humaneval/HumanEval.jsonl"
+    output: Optional[str] = None
+
+    test_only: Optional[str] = None
+    generate_only: bool = False
+
+    num_samples: int = 200
+    max_tokens: int = 512
+    temperature: float = 0.8
+    top_p: float = 0.95
+    top_k: int = 50
+    batch_size: int = 32
+    test_timeout: float = 3.0
+    test_workers: int = 8
+    k_values: Tuple[int, ...] = (1, 10, 100)
+    problem_indices: Optional[List[int]] = None
+
+
+def download(url: str, path: str):
+    if os.path.exists(path):
+        return
+    import gzip
+    import urllib.request
+
+    os.makedirs(os.path.dirname(path) or ".", exist_ok=True)
+    print(f"Downloading {url} ...")
+    tmp = path + ".tmp"
+    urllib.request.urlretrieve(url, tmp)
+    with gzip.open(tmp, "rb") as f_in:
+        with open(path, "wb") as f_out:
+            f_out.write(f_in.read())
+    os.remove(tmp)
+    print(f"  saved to {path}")
+
+
+def load_jsonl(path: str) -> List[dict]:
+    rows = []
+    with open(path, encoding="utf-8") as f:
+        for line in f:
+            line = line.strip()
+            if line:
+                rows.append(json.loads(line))
+    return rows
+
+
+def save_json(path: str, data):
+    with open(path, "w", encoding="utf-8") as f:
+        json.dump(data, f, indent=2, ensure_ascii=False)
+
+
+def create_engine(param_path: str, batch_size: int) -> InferenceEngine:
+    model = AutoModel.from_pretrained(param_path)
+    tokenizer = AutoTokenizer.from_pretrained(param_path)
+    model.to(device="cuda", dtype=torch.bfloat16)
+    return InferenceEngine(
+        model=model,
+        tokenizer=tokenizer,
+        max_batch_size=batch_size,
+    )
+
+
+def trim_stop(text: str) -> str:
+    for stop in STOP_SEQUENCES:
+        idx = text.find(stop)
+        if idx != -1:
+            text = text[:idx]
+    return text
+
+
+def extract_body(code: str, entry_point: str) -> Optional[str]:
+    pattern = rf"def\s+{re.escape(entry_point)}\b[^:]*:"
+    match = re.search(pattern, code)
+    if not match:
+        return code
+
+    lines = code[match.end() :].split("\n")
+    body_lines = []
+    started = False
+
+    for line in lines:
+        stripped = line.rstrip()
+        if not stripped and not started:
+            continue
+        if not stripped and started:
+            body_lines.append("")
+            continue
+        if not started:
+            started = True
+        if stripped.lstrip() == stripped and started:
+            break
+        body_lines.append(stripped)
+
+    body = "\n".join(body_lines)
+    return body if body.strip() else None
+
+
+def deduplicate(seq: Sequence[str]) -> List[str]:
+    seen = set()
+    return [x for x in seq if not (x in seen or seen.add(x))]
+
+
+def generate_batch(
+    engine: InferenceEngine,
+    prompt: str,
+    n: int,
+    batch_size: int,
+    max_tokens: int,
+    temperature: float,
+    top_p: float,
+    top_k: int,
+) -> List[str]:
+    completions = []
+    remaining = n
+    while remaining > 0:
+        current = min(batch_size, remaining)
+        outputs = engine.generate(
+            prompt=[prompt] * current,
+            stream=False,
+            max_tokens=max_tokens,
+            temperature=temperature,
+            top_p=top_p,
+            top_k=top_k,
+        )
+        completions.extend(outputs if isinstance(outputs, list) else [outputs])
+        remaining -= current
+    return deduplicate(completions)
+
+
+def extract_completions(
+    raw: Sequence[str],
+    entry_point: str,
+) -> List[str]:
+    bodies = []
+    for r in raw:
+        t = trim_stop(r)
+        body = extract_body(t, entry_point)
+        if body:
+            bodies.append(body)
+    return bodies
+
+
+def generate_all(
+    engine: InferenceEngine,
+    problems: Sequence[dict],
+    cfg: EvalConfig,
+) -> List[dict]:
+    results = []
+    for problem in tqdm.tqdm(problems, desc="Generating", unit="problem"):
+        raw = generate_batch(
+            engine,
+            problem["prompt"],
+            cfg.num_samples,
+            cfg.batch_size,
+            cfg.max_tokens,
+            cfg.temperature,
+            cfg.top_p,
+            cfg.top_k,
+        )
+        bodies = extract_completions(raw, problem["entry_point"])
+        results.append(
+            dict(
+                task_id=problem["task_id"],
+                entry_point=problem["entry_point"],
+                prompt=problem["prompt"],
+                test=problem["test"],
+                completions=bodies,
+            )
+        )
+    return results
+
+
+def execute_one(args: tuple) -> bool:
+    full_code, entry_point, timeout = args
+    try:
+        r = subprocess.run(
+            [sys.executable, "-c", full_code],
+            capture_output=True,
+            timeout=timeout,
+        )
+        return r.returncode == 0
+    except subprocess.TimeoutExpired:
+        return False
+    except Exception:
+        return False
+
+
+def test_one(item: dict, cfg: EvalConfig) -> Tuple[str, int, int]:
+    from concurrent.futures import ProcessPoolExecutor
+
+    task_id = item["task_id"]
+    completions = item["completions"]
+    codes = [
+        (
+            item["prompt"] + c + "\n" + item["test"],
+            item["entry_point"],
+            cfg.test_timeout,
+        )
+        for c in completions
+    ]
+    n = len(codes)
+    passed = 0
+    with ProcessPoolExecutor(max_workers=cfg.test_workers) as pool:
+        for ok in pool.map(execute_one, codes):
+            if ok:
+                passed += 1
+    return task_id, n, passed
+
+
+def test_all(
+    items: Sequence[dict],
+    cfg: EvalConfig,
+) -> Iterator[Tuple[str, int, int]]:
+    for item in tqdm.tqdm(items, desc="Testing", unit="problem"):
+        yield test_one(item, cfg)
+
+
+def pass_at_k(n: int, c: int, k: int) -> float:
+    if n - c < k:
+        return 1.0
+    return 1.0 - float(prod(1.0 - k / np.arange(n - c + 1, n + 1)))
+
+
+def score_results(
+    results: Iterator[Tuple[str, int, int]],
+    k_values: Tuple[int, ...],
+) -> Dict:
+    # filter to k <= n (peek first result to get n)
+    first = next(results)
+    results = itertools.chain([first], results)
+    n = first[1]
+    k_values = tuple(k for k in k_values if k <= n)
+
+    scores = {k: [] for k in k_values}
+    output = {}
+    for task_id, n, passed in results:
+        entry = {"task_id": task_id, "n": n, "passed": passed}
+        for k in k_values:
+            pk = round(pass_at_k(n, passed, k), 4)
+            entry[f"pass@{k}"] = pk
+            scores[k].append(pk)
+        output[task_id] = entry
+
+    summary = {}
+    for k in k_values:
+        vals = scores[k]
+        summary[f"pass@{k}"] = round(float(np.mean(vals)), 4)
+    output["_summary"] = summary
+    return output
+
+
+def run_pipeline(cfg: EvalConfig) -> Dict:
+    if cfg.test_only:
+        with open(cfg.test_only, encoding="utf-8") as f:
+            generated = json.load(f)
+    else:
+        download(HUMANEVAL_URL, cfg.data_path)
+
+        problems = load_jsonl(cfg.data_path)
+        if cfg.problem_indices:
+            problems = [problems[i] for i in cfg.problem_indices if i < len(problems)]
+
+        engine = create_engine(cfg.param_path, cfg.batch_size)
+
+        try:
+            generated = generate_all(engine, problems, cfg)
+        finally:
+            engine.shutdown()
+
+        if cfg.output:
+            mid = cfg.output.replace(".json", "_completions.json")
+            save_json(mid, generated)
+            print(f"Completions saved to {mid}")
+
+        if cfg.generate_only:
+            return {}
+
+    results = test_all(generated, cfg)
+    scored = score_results(results, cfg.k_values)
+    return scored
+
+
+def parse_args(argv: Optional[List[str]] = None) -> EvalConfig:
+    p = argparse.ArgumentParser(description="HumanEval benchmark")
+    p.add_argument("--param_path", type=str, default="./params")
+    p.add_argument("--data_path", type=str, default="./humaneval/HumanEval.jsonl")
+    p.add_argument("--output", type=str, default=None)
+    p.add_argument(
+        "--test_only",
+        type=str,
+        default=None,
+        help="Skip generation, test existing completions JSON",
+    )
+    p.add_argument(
+        "--generate_only", action="store_true", help="Only generate, skip testing"
+    )
+    p.add_argument("--num_samples", type=int, default=200)
+    p.add_argument("--max_tokens", type=int, default=512)
+    p.add_argument("--temperature", type=float, default=0.8)
+    p.add_argument("--top_p", type=float, default=0.95)
+    p.add_argument("--top_k", type=int, default=50)
+    p.add_argument("--batch_size", type=int, default=32)
+    p.add_argument("--test_workers", type=int, default=8)
+    p.add_argument("--test_timeout", type=float, default=3.0)
+    p.add_argument("--problems", type=int, nargs="+", default=None)
+    args = p.parse_args(argv)
+
+    return EvalConfig(
+        param_path=args.param_path,
+        data_path=args.data_path,
+        output=args.output,
+        test_only=args.test_only,
+        generate_only=args.generate_only,
+        num_samples=args.num_samples,
+        max_tokens=args.max_tokens,
+        temperature=args.temperature,
+        top_p=args.top_p,
+        top_k=args.top_k,
+        batch_size=args.batch_size,
+        test_workers=args.test_workers,
+        test_timeout=args.test_timeout,
+        problem_indices=args.problems,
+    )
+
+
+def report(scored: Dict):
+    summary = scored.pop("_summary", {})
+    print(f"\n{'=' * 60}")
+    for k, v in summary.items():
+        print(f"  {k}: {v:.2%}")
+    print(f"{'=' * 60}")
+    scored["_summary"] = summary
+
+
+def main():
+    cfg = parse_args()
+    scored = run_pipeline(cfg)
+    report(scored)
+    if cfg.output:
+        save_json(cfg.output, scored)
+        print(f"Results saved to {cfg.output}")
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_ifd.py

@@ -0,0 +1,474 @@
+"""IFD (Instruction Following Difficulty) data quality scoring.
+
+IFD = conditional_NLL / unconditional_NLL
+
+- Messages format: plain text concatenation (no chat template)
+- Plain format: raw instr_key + resp_key fields
+
+v2 changelog:
+  - Same token set: unconditional pass prefixes resp with a plain-text sentinel
+    (default ``\\n``; use ``--sentinel_text ""`` for bos/pad fallback).
+    Both branches predict the identical N resp tokens.
+    Single-token answers (rl=1) are now supported.
+  - ctx_len tracked in output
+  - skip_reason for None samples (no more silent None)
+  - --per_token for per-token IFD breakdown
+"""
+
+import argparse
+import json
+import statistics
+
+import torch
+import torch.nn.functional as F
+import tqdm
+
+from astrai.model import AutoModel
+from astrai.tokenize import AutoTokenizer
+
+
+def _pack_bins(pairs, max_len):
+    """BFD bin packing: pack (c+r) into bins of max total length."""
+    indexed = sorted(enumerate(pairs), key=lambda x: -(len(x[1][0]) + len(x[1][1])))
+    bins = []
+    lengths = []
+    for orig_idx, (c, r) in indexed:
+        size = len(c) + len(r)
+        best_bin = -1
+        for bi, rem in enumerate(lengths):
+            if rem >= size:
+                if best_bin < 0 or rem < lengths[best_bin]:
+                    best_bin = bi
+        if best_bin >= 0:
+            bins[best_bin].append((orig_idx, c, r))
+            lengths[best_bin] -= size
+        else:
+            bins.append([(orig_idx, c, r)])
+            lengths.append(max_len - size)
+    return bins
+
+
+def _resolve_sentinel_ids(tokenizer, sentinel_text):
+    """Tokenize the sentinel text for the unconditional pass prefix.
+
+    Falls back to bos/pad_token_id when sentinel_text is empty or
+    cannot be encoded.
+    """
+    if sentinel_text:
+        ids = tokenizer.encode(sentinel_text, add_special_tokens=False)
+        if ids:
+            return ids
+    for attr in ("bos_token_id", "pad_token_id", "eos_token_id"):
+        tid = getattr(tokenizer, attr, None)
+        if tid is not None:
+            return [tid]
+    return [0]
+
+
+@torch.inference_mode()
+def _score_batch(
+    pairs, model, device, max_len=2048, sentinel_ids=None, per_token=False
+):
+    """BFD-packed IFD with text-sentinel-anchored unconditional pass.
+
+    Conditional:   (ctx + resp[0..i-1]) → resp[i],  i = 0..N-1
+    Unconditional: (<sentinel> + resp[0..i-1]) → resp[i],  i = 0..N-1
+
+    Both branches predict the identical N response tokens.  A short
+    plain-text sentinel gives the unconditional pass a prefix so that
+    every response token can be predicted.  Single-token answers (rl=1)
+    are supported.
+    """
+    if not pairs:
+        return []
+
+    if sentinel_ids is None:
+        sentinel_ids = [0]
+
+    bins = _pack_bins(pairs, max_len)
+    result = [None] * len(pairs)
+
+    # ---- conditional pass (packed, per-document position IDs) ----
+    for bin_items in bins:
+        seq_ids = []
+        global_pos = []
+        doc_ids = []
+        doc_offsets = []
+
+        for di, (orig_idx, c, r) in enumerate(bin_items):
+            ctx_len = len(c)
+            start = len(seq_ids)
+            item_len = len(c) + len(r)
+            seq_ids.extend(c)
+            seq_ids.extend(r)
+            end = len(seq_ids)
+            global_pos.extend(range(item_len))
+            doc_ids.extend([di] * item_len)
+            doc_offsets.append((start, end, orig_idx, ctx_len))
+
+        full_ids = torch.tensor([seq_ids], device=device, dtype=torch.long)
+        pos_ids = torch.tensor([global_pos], device=device, dtype=torch.long)
+        seq_len = len(seq_ids)
+        causal = torch.tril(
+            torch.ones(seq_len, seq_len, dtype=torch.bool, device=device)
+        )
+        doc_t = torch.tensor([doc_ids], device=device)
+        doc_mask = doc_t.unsqueeze(-1) == doc_t.unsqueeze(-2)
+        attn_mask = (causal & doc_mask[0]).unsqueeze(0).unsqueeze(0)
+        logits_full = model(full_ids, position_ids=pos_ids, input_mask=attn_mask)[
+            "logits"
+        ][0]
+
+        for start, end, orig_idx, ctx_len in doc_offsets:
+            rl = end - start - ctx_len
+            resp_start = start + ctx_len - 1
+            resp_logits = logits_full[resp_start : end - 1]
+            resp_targets = torch.tensor(
+                seq_ids[start + ctx_len : end], device=device, dtype=torch.long
+            )
+            cond_losses = F.cross_entropy(
+                resp_logits, resp_targets, reduction="none"
+            ).cpu()
+            result[orig_idx] = {
+                "_cond_losses": cond_losses,
+                "_rl": rl,
+                "_ctx_len": ctx_len,
+            }
+
+    # ---- unconditional pass (sentinel-prefixed, batched 2D) ----
+    valid_items = [
+        (
+            i,
+            result[i]["_rl"],
+            result[i]["_ctx_len"],
+            result[i]["_cond_losses"],
+            pairs[i][1],
+        )
+        for i in range(len(pairs))
+        if result[i] is not None and "_cond_losses" in result[i]
+    ]
+    if not valid_items:
+        return result
+
+    valid_items.sort(key=lambda x: -x[1])
+    prefix_len = len(sentinel_ids)
+    max_rl = prefix_len + max(rl for _, rl, _, _, _ in valid_items)
+    bsz = len(valid_items)
+
+    u_batch = torch.zeros(bsz, max_rl, dtype=torch.long, device=device)
+    for ri, (_, rl, _, _, r_ids) in enumerate(valid_items):
+        u_batch[ri, :prefix_len] = torch.tensor(sentinel_ids, dtype=torch.long)
+        u_batch[ri, prefix_len : prefix_len + rl] = torch.tensor(
+            r_ids, dtype=torch.long
+        )
+
+    logits_resp = model(u_batch)["logits"]
+
+    for ri, (orig_idx, rl, ctx_len, cond_losses, _) in enumerate(valid_items):
+        unp_logits = logits_resp[ri, prefix_len - 1 : prefix_len - 1 + rl]
+        unp_targets = u_batch[ri, prefix_len : prefix_len + rl]
+        uncond_losses = F.cross_entropy(unp_logits, unp_targets, reduction="none").cpu()
+
+        L_cond = cond_losses.mean().item()
+        L_uncond = uncond_losses.mean().item()
+        ifd = L_cond / L_uncond if L_uncond > 0 else None
+
+        out = {
+            "L_cond": round(L_cond, 6),
+            "L_uncond": round(L_uncond, 6),
+            "ifd": round(ifd, 6) if ifd is not None else None,
+            "ctx_len": ctx_len,
+            "resp_len": rl,
+        }
+        if per_token:
+            per = [
+                (round(c.item() / u.item(), 6) if u.item() > 0 else None)
+                for c, u in zip(cond_losses, uncond_losses)
+            ]
+            out["ifd_per_token"] = per
+        result[orig_idx] = out
+
+    return result
+
+
+def _trim(context_ids, resp_ids, max_len):
+    """Truncate to fit max_len, keeping response intact if possible."""
+    if len(resp_ids) > max_len // 2:
+        resp_ids = resp_ids[: max_len // 2]
+    full_ids = context_ids + resp_ids
+    if len(full_ids) <= max_len:
+        return context_ids, resp_ids
+    overflow = len(full_ids) - max_len
+    if overflow >= len(context_ids):
+        return [], resp_ids[:max_len]
+    return context_ids[overflow:], resp_ids
+
+
+def score_plain(
+    model,
+    tokenizer,
+    instruction,
+    response,
+    device,
+    max_len=2048,
+    sentinel_ids=None,
+    per_token=False,
+):
+    """Compute IFD for a single instruction-response pair (plain format)."""
+    ctx_ids = tokenizer.encode(instruction, add_special_tokens=False)
+    resp_ids = tokenizer.encode(response, add_special_tokens=False)
+    ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+    if not ctx_ids or not resp_ids:
+        return {
+            "L_cond": None,
+            "L_uncond": None,
+            "ifd": None,
+            "skip_reason": "empty ctx or resp",
+        }
+    return _score_batch(
+        [(ctx_ids, resp_ids)],
+        model,
+        device,
+        max_len,
+        sentinel_ids=sentinel_ids,
+        per_token=per_token,
+    )[0]
+
+
+def score_messages(
+    model, tokenizer, messages, device, max_len=2048, sentinel_ids=None, per_token=False
+):
+    """Compute IFD for each assistant turn in a messages array."""
+    turns = []
+    for i, msg in enumerate(messages):
+        if msg.get("role") != "assistant":
+            continue
+        ctx_text = "\n\n".join(m["content"] for m in messages[:i])
+        ctx_ids = tokenizer.encode(ctx_text)
+        resp_ids = tokenizer.encode(msg["content"], add_special_tokens=False)
+        ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+        if ctx_ids and resp_ids:
+            turns.append((ctx_ids, resp_ids))
+    if not turns:
+        return None
+    raw_scores = _score_batch(
+        turns, model, device, max_len, sentinel_ids=sentinel_ids, per_token=per_token
+    )
+    valid = [s for s in raw_scores if s is not None and s.get("ifd") is not None]
+    if not valid:
+        return {"ifd": None, "ifd_turns": raw_scores}
+    avg = sum(s["ifd"] for s in valid) / len(valid)
+    return {
+        "ifd": avg,
+        "ifd_detail": valid[0] if len(valid) == 1 else None,
+        "ifd_turns": raw_scores,
+    }
+
+
+def process_file(
+    param_path,
+    input_file,
+    output_file,
+    instr_key,
+    resp_key,
+    max_len=2048,
+    data_format="plain",
+    batch_size=1,
+    device=None,
+    sentinel_text="\n",
+    per_token=False,
+):
+    if device is None:
+        device = "cuda" if torch.cuda.is_available() else "cpu"
+    dtype = torch.bfloat16 if "cuda" in device else torch.float32
+
+    model = AutoModel.from_pretrained(param_path)
+    tokenizer = AutoTokenizer.from_pretrained(param_path)
+    model.to(device=device, dtype=dtype)
+    model.eval()
+
+    sentinel_ids = _resolve_sentinel_ids(tokenizer, sentinel_text)
+
+    with open(input_file, encoding="utf-8") as f:
+        data = [json.loads(line) for line in f if line.strip()]
+
+    results = []
+    all_ifds = []
+    buffer = []
+
+    for item in tqdm.tqdm(data, desc="Computing IFD", unit="sample"):
+        if data_format == "messages":
+            turns = []
+            for i, msg in enumerate(item.get("messages", [])):
+                if msg.get("role") != "assistant":
+                    continue
+                ctx_text = "\n\n".join(m["content"] for m in item["messages"][:i])
+                ctx_ids = tokenizer.encode(ctx_text)
+                resp_ids = tokenizer.encode(msg["content"], add_special_tokens=False)
+                ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+                if ctx_ids and resp_ids:
+                    turns.append((ctx_ids, resp_ids))
+            if not turns:
+                results.append(
+                    {
+                        **item,
+                        "ifd": None,
+                        "skip_reason": "no valid assistant turns",
+                        "ifd_turns": [],
+                    }
+                )
+                continue
+            buffer.append((item, turns, "messages"))
+        else:
+            ctx_ids = tokenizer.encode(item[instr_key], add_special_tokens=False)
+            resp_ids = tokenizer.encode(item[resp_key], add_special_tokens=False)
+            ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+            if not ctx_ids or not resp_ids:
+                results.append(
+                    {
+                        **item,
+                        "ifd": None,
+                        "ifd_detail": {"skip_reason": "empty ctx or resp"},
+                    }
+                )
+                continue
+            buffer.append((item, [(ctx_ids, resp_ids)], "plain"))
+
+        if len(buffer) >= batch_size:
+            _flush_buffer(
+                buffer,
+                results,
+                all_ifds,
+                model,
+                device,
+                max_len,
+                sentinel_ids,
+                per_token,
+            )
+
+    if buffer:
+        _flush_buffer(
+            buffer, results, all_ifds, model, device, max_len, sentinel_ids, per_token
+        )
+
+    with open(output_file, "w", encoding="utf-8") as f:
+        for item in results:
+            f.write(json.dumps(item, ensure_ascii=False) + "\n")
+
+    valid_ifd = [v for v in all_ifds if v is not None]
+    if valid_ifd:
+        print(f"\n{'=' * 50}")
+        print(f"  Samples:       {len(data)}")
+        print(f"  Valid IFD:     {len(valid_ifd)}")
+        print(f"  Skipped:       {len(data) - len(valid_ifd)}")
+        print(f"  Mean IFD:      {statistics.mean(valid_ifd):.4f}")
+        print(f"  Median IFD:    {statistics.median(valid_ifd):.4f}")
+        if len(valid_ifd) > 1:
+            print(f"  Stdev IFD:     {statistics.stdev(valid_ifd):.4f}")
+        print(f"  Min IFD:       {min(valid_ifd):.4f}")
+        print(f"  Max IFD:       {max(valid_ifd):.4f}")
+        print(f"{'=' * 50}")
+    print(f"Results saved to {output_file}")
+
+
+def _flush_buffer(
+    buffer, results, all_ifds, model, device, max_len, sentinel_ids, per_token
+):
+    all_pairs = []
+    indices = []
+    for item, turns, fmt in buffer:
+        start = len(all_pairs)
+        all_pairs.extend(turns)
+        indices.append((item, turns, fmt, start, len(all_pairs)))
+
+    raw = _score_batch(
+        all_pairs,
+        model,
+        device,
+        max_len,
+        sentinel_ids=sentinel_ids,
+        per_token=per_token,
+    )
+
+    for item, turns, fmt, start, end in indices:
+        turn_scores = raw[start:end]
+        if fmt == "messages":
+            valid = [
+                s for s in turn_scores if s is not None and s.get("ifd") is not None
+            ]
+            if not valid:
+                results.append({**item, "ifd": None, "ifd_turns": turn_scores})
+            else:
+                avg = sum(s["ifd"] for s in valid) / len(valid)
+                all_ifds.append(avg)
+                results.append(
+                    {
+                        **item,
+                        "ifd": avg,
+                        "ifd_detail": valid[0] if len(valid) == 1 else None,
+                        "ifd_turns": turn_scores,
+                    }
+                )
+        else:
+            score = turn_scores[0]
+            all_ifds.append(score.get("ifd"))
+            results.append({**item, "ifd": score.get("ifd"), "ifd_detail": score})
+
+    buffer.clear()
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Compute IFD scores for instruction-response data"
+    )
+    parser.add_argument("--param_path", type=str, required=True, help="Model directory")
+    parser.add_argument("--input", type=str, required=True, help="Input JSONL file")
+    parser.add_argument("--output", type=str, required=True, help="Output JSONL file")
+    parser.add_argument("--max_len", type=int, default=2048, help="Max token length")
+    parser.add_argument(
+        "--format",
+        type=str,
+        default="plain",
+        choices=["plain", "messages"],
+        help="Input format",
+    )
+    parser.add_argument(
+        "--instr_key", type=str, default="instruction", help="Key for instruction field"
+    )
+    parser.add_argument(
+        "--resp_key", type=str, default="response", help="Key for response field"
+    )
+    parser.add_argument(
+        "--batch_size", type=int, default=8, help="Batch size for model forward passes"
+    )
+    parser.add_argument("--device", type=str, default=None, help="Device (e.g. cuda:0)")
+    parser.add_argument(
+        "--sentinel_text",
+        type=str,
+        default="\n",
+        help='Plain-text prefix for unconditional pass (default: "\\n"). Use "" for bos/pad fallback.',
+    )
+    parser.add_argument(
+        "--per_token",
+        action="store_true",
+        help="Include per-token IFD breakdown in output",
+    )
+    args = parser.parse_args()
+
+    process_file(
+        args.param_path,
+        args.input,
+        args.output,
+        args.instr_key,
+        args.resp_key,
+        args.max_len,
+        data_format=args.format,
+        batch_size=args.batch_size,
+        device=args.device,
+        sentinel_text=args.sentinel_text,
+        per_token=args.per_token,
+    )
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_ifeval.py

@@ -0,0 +1,609 @@
+"""IFEval instruction-following evaluation benchmark.
+
+Evaluates model responses against regex-based constraint verifiers.
+Supports all IFEval constraint types except language detection.
+
+Usage::
+
+    python scripts/tools/evaluate_ifeval.py --param_path ./params \
+        --data_path ifeval.jsonl --output results.json \
+        --temperature 0.1 --max_tokens 512
+"""
+
+import argparse
+import json
+import os
+import re
+import urllib.request
+from typing import Callable, Dict, List, Optional
+
+import torch
+import tqdm
+
+from astrai.inference import InferenceEngine
+from astrai.model import AutoModel
+from astrai.tokenize import AutoTokenizer
+
+IFEVAL_URL = (
+    "https://raw.githubusercontent.com/google-research/"
+    "google-research/master/instruction_following_eval/data/input_data.jsonl"
+)
+
+CONSTRAINT_VERIFIERS: Dict[str, Callable[[str, dict], bool]] = {}
+
+
+def register(instruction_id: str):
+    def decorator(fn):
+        CONSTRAINT_VERIFIERS[instruction_id] = fn
+        return fn
+
+    return decorator
+
+
+@register("keywords:existence")
+def check_keyword_existence(response: str, kwargs: dict) -> bool:
+    for kw in kwargs["keywords"]:
+        if not re.search(re.escape(kw), response, re.IGNORECASE):
+            return False
+    return True
+
+
+@register("keywords:frequency")
+def check_keyword_frequency(response: str, kwargs: dict) -> bool:
+    keyword = kwargs["keyword"]
+    frequency = kwargs.get("frequency", 1)
+    relation = kwargs.get("relation", "at least")
+    count = len(re.findall(re.escape(keyword), response, re.IGNORECASE))
+    if relation == "less than":
+        return count < frequency
+    return count >= frequency
+
+
+@register("keywords:forbidden_words")
+def check_forbidden_words(response: str, kwargs: dict) -> bool:
+    for word in kwargs["forbidden_words"]:
+        if re.search(r"\b" + re.escape(word) + r"\b", response, re.IGNORECASE):
+            return False
+    return True
+
+
+@register("keywords:letter_frequency")
+def check_letter_frequency(response: str, kwargs: dict) -> bool:
+    letter = kwargs["letter"].lower()
+    frequency = kwargs.get("let_frequency", 1)
+    relation = kwargs.get("let_relation", "at least")
+    count = response.lower().count(letter)
+    if relation == "less than":
+        return count < frequency
+    return count >= frequency
+
+
+@register("detectable_content:number_placeholders")
+def check_placeholders(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_placeholders", 1)
+    placeholders = re.findall(r"\[.*?\]", response)
+    return len(placeholders) >= num
+
+
+@register("detectable_content:postscript")
+def check_postscript(response: str, kwargs: dict) -> bool:
+    marker = kwargs.get("postscript_marker", "P.S.")
+    response_lower = response.lower()
+    if marker == "P.P.S":
+        return bool(re.search(r"p\.\s?p\.\s?s", response_lower))
+    elif marker == "P.S.":
+        return bool(re.search(r"p\.\s?s\.", response_lower))
+    else:
+        return bool(re.search(re.escape(marker.lower()), response_lower))
+
+
+@register("detectable_format:number_bullet_lists")
+def check_bullet_lists(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_bullets", 1)
+    bullets = re.findall(r"^\s*\*[^\*].*$", response, re.MULTILINE)
+    dashes = re.findall(r"^\s*-.*$", response, re.MULTILINE)
+    return len(bullets) + len(dashes) == num
+
+
+@register("detectable_format:number_highlighted_sections")
+def check_highlighted_sections(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_highlights", 1)
+    highlights = re.findall(r"\*[^\n\*]+\*", response)
+    count = 0
+    for h in highlights:
+        if h.strip("*").strip():
+            count += 1
+    return count >= num
+
+
+@register("detectable_format:multiple_sections")
+def check_multiple_sections(response: str, kwargs: dict) -> bool:
+    splitter = kwargs.get("section_spliter", "Section")
+    num = kwargs.get("num_sections", 1)
+    pattern = r"\s?" + re.escape(splitter) + r"\s?\d+\s?"
+    sections = re.split(pattern, response)
+    return len(sections) - 1 >= num
+
+
+@register("detectable_format:title")
+def check_title(response: str, kwargs: dict) -> bool:
+    titles = re.findall(r"<<[^>\n]+>>", response)
+    for title in titles:
+        if title.strip("<>").strip():
+            return True
+    return False
+
+
+@register("detectable_format:json_format")
+def check_json_format(response: str, kwargs: dict) -> bool:
+    value = response.strip()
+    for prefix in ("```json", "```Json", "```JSON", "```"):
+        if value.lower().startswith(prefix.lower()):
+            value = value[len(prefix) :].strip()
+    if value.endswith("```"):
+        value = value[:-3].strip()
+    try:
+        json.loads(value)
+        return True
+    except (ValueError, json.JSONDecodeError):
+        return False
+
+
+@register("detectable_format:general_punctuation")
+def check_general_punctuation(response: str, kwargs: dict) -> bool:
+    punctuation_blacklist = kwargs.get("punctuation_blacklist", [])
+    for punct in punctuation_blacklist:
+        if punct in response:
+            return False
+    return True
+
+
+@register("detectable_format:number_highlighted_words")
+def check_highlighted_words(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_highlights", 1)
+    highlights = re.findall(r"\*[^\s\*][^\*]*[^\s\*]\*", response)
+    return len(highlights) >= num
+
+
+@register("startend:end_checker")
+def check_end_checker(response: str, kwargs: dict) -> bool:
+    end_phrase = kwargs["end_phrase"]
+    return (
+        response.strip()
+        .rstrip('"')
+        .rstrip()
+        .lower()
+        .endswith(end_phrase.strip().lower())
+    )
+
+
+@register("startend:quotation")
+def check_quotation(response: str, kwargs: dict) -> bool:
+    value = response.strip()
+    return value.startswith('"') and value.endswith('"')
+
+
+@register("startend:start_checker")
+def check_start_checker(response: str, kwargs: dict) -> bool:
+    starter = kwargs["starter"]
+    return bool(re.search(r"^\s*" + re.escape(starter), response, re.MULTILINE))
+
+
+@register("change_case:english_capital")
+def check_english_capital(response: str, kwargs: dict) -> bool:
+    return response.isupper()
+
+
+@register("change_case:english_lowercase")
+def check_english_lowercase(response: str, kwargs: dict) -> bool:
+    return response.islower()
+
+
+@register("change_case:capital_word_frequency")
+def check_capital_word_frequency(response: str, kwargs: dict) -> bool:
+    frequency = kwargs.get("capital_frequency", 1)
+    relation = kwargs.get("capital_relation", "at least")
+    capital_words = re.findall(r"\b[A-Z]{2,}\b", response)
+    count = len(capital_words)
+    if relation == "less than":
+        return count < frequency
+    return count >= frequency
+
+
+@register("punctuation:no_comma")
+def check_no_comma(response: str, kwargs: dict) -> bool:
+    return "," not in response
+
+
+def count_words(text: str) -> int:
+    return len(re.findall(r"\b\w+\b", text))
+
+
+def count_sentences(text: str) -> int:
+    text = text.strip()
+    if not text:
+        return 0
+    sentences = re.split(r"(?<=[.!?])\s+", text)
+    return len([s for s in sentences if s.strip()])
+
+
+@register("length_constraints:number_words")
+def check_number_words(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_words", 100)
+    relation = kwargs.get("relation", "at least")
+    cnt = count_words(response)
+    if relation == "less than":
+        return cnt < num
+    return cnt >= num
+
+
+@register("length_constraints:number_sentences")
+def check_number_sentences(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_sentences", 5)
+    relation = kwargs.get("relation", "at least")
+    cnt = count_sentences(response)
+    if relation == "less than":
+        return cnt < num
+    return cnt >= num
+
+
+@register("length_constraints:number_paragraphs")
+def check_number_paragraphs(response: str, kwargs: dict) -> bool:
+    num = kwargs.get("num_paragraphs", 1)
+    if "***" in response:
+        paragraphs = re.split(r"\s?\*\*\*\s?", response)
+    else:
+        paragraphs = re.split(r"\n\n+", response)
+    actual = len([p for p in paragraphs if p.strip()])
+    return actual == num
+
+
+@register("length_constraints:nth_paragraph_first_word")
+def check_nth_paragraph_first_word(response: str, kwargs: dict) -> bool:
+    num_paragraphs = kwargs.get("num_paragraphs", 1)
+    nth = kwargs.get("nth_paragraph", 1)
+    first_word = kwargs.get("first_word", "").lower()
+
+    paragraphs = re.split(r"\n\n+", response)
+    paragraphs = [p.strip() for p in paragraphs if p.strip()]
+
+    if len(paragraphs) != num_paragraphs:
+        return False
+    if nth > len(paragraphs):
+        return False
+
+    target = paragraphs[nth - 1]
+    words = target.split()
+    if not words:
+        return False
+
+    word = words[0].strip().lstrip("'\"").rstrip(".,!?:;\"'")
+    return word.lower() == first_word
+
+
+@register("length_constraints:nth_word_checker")
+def check_nth_word(response: str, kwargs: dict) -> bool:
+    nth = kwargs.get("nth_word", 1)
+    target = kwargs.get("target_word", "").lower()
+    words = re.findall(r"\b\w+\b", response)
+    if nth > len(words):
+        return False
+    return words[nth - 1].lower() == target
+
+
+@register("combination:repeat_prompt")
+def check_repeat_prompt(response: str, kwargs: dict) -> bool:
+    prompt = kwargs["prompt_to_repeat"]
+    return response.strip().lower().startswith(prompt.strip().lower())
+
+
+@register("combination:two_responses")
+def check_two_responses(response: str, kwargs: dict) -> bool:
+    parts = response.split("******")
+    valid = [p for p in parts if p.strip()]
+    if len(valid) != 2:
+        return False
+    return valid[0].strip() != valid[1].strip()
+
+
+def download_ifeval(data_path: str):
+    if os.path.exists(data_path):
+        return
+    os.makedirs(os.path.dirname(data_path) or ".", exist_ok=True)
+    print(f"Downloading IFEval from {IFEVAL_URL} ...")
+    tmp = data_path + ".tmp"
+    urllib.request.urlretrieve(IFEVAL_URL, tmp)
+    with open(tmp, "rb") as f_in:
+        content = f_in.read()
+    with open(data_path, "wb") as f_out:
+        f_out.write(content)
+    os.remove(tmp)
+    print(f"  saved to {data_path}")
+
+
+def load_problems(data_path: str) -> List[dict]:
+    problems = []
+    with open(data_path, "r", encoding="utf-8") as f:
+        for line in f:
+            line = line.strip()
+            if line:
+                problems.append(json.loads(line))
+    return problems
+
+
+def verify_response(response: str, instruction_id: str, kwargs: dict) -> Optional[bool]:
+    verifier = CONSTRAINT_VERIFIERS.get(instruction_id)
+    if verifier is None:
+        return None
+    try:
+        return verifier(response, kwargs)
+    except Exception:
+        return False
+
+
+def generate_one(
+    engine: InferenceEngine,
+    tokenizer: AutoTokenizer,
+    prompt: str,
+    max_tokens: int,
+    temperature: float,
+    top_p: float,
+    top_k: int,
+) -> str:
+    formatted = tokenizer.apply_chat_template(
+        [{"role": "user", "content": prompt}],
+        tokenize=False,
+        add_generation_prompt=True,
+    )
+    output = engine.generate(
+        prompt=formatted,
+        stream=False,
+        max_tokens=max_tokens,
+        temperature=temperature,
+        top_p=top_p,
+        top_k=top_k,
+    )
+    if isinstance(output, list):
+        return output[0]
+    return output
+
+
+def evaluate(
+    engine: InferenceEngine,
+    tokenizer: AutoTokenizer,
+    problems: List[dict],
+    max_tokens: int,
+    temperature: float,
+    top_p: float,
+    top_k: int,
+    num_samples: int = 1,
+) -> Dict:
+    results = {}
+    constraint_stats: Dict[str, Dict[str, int]] = {}
+    total_constraints = 0
+    total_passed = 0
+
+    for problem in tqdm.tqdm(problems, desc="IFEval", unit="problem"):
+        key = problem["key"]
+        prompt = problem["prompt"]
+        instruction_ids = problem["instruction_id_list"]
+        kwargs_list = problem["kwargs"]
+
+        samples = []
+        for _ in range(num_samples):
+            response = generate_one(
+                engine, tokenizer, prompt, max_tokens, temperature, top_p, top_k
+            )
+            samples.append(response)
+
+        constraint_results = []
+        passed = 0
+        verified = 0
+
+        for idx, instruction_id in enumerate(instruction_ids):
+            kwargs = kwargs_list[idx] if idx < len(kwargs_list) else {}
+            best_pass = False
+            for response in samples:
+                result = verify_response(response, instruction_id, kwargs)
+                if result is None:
+                    continue
+                if result:
+                    best_pass = True
+                    break
+
+            verifier_exists = instruction_id in CONSTRAINT_VERIFIERS
+            if verifier_exists:
+                verified += 1
+                if best_pass:
+                    passed += 1
+
+            constraint_results.append(
+                {
+                    "instruction_id": instruction_id,
+                    "passed": best_pass,
+                    "supported": verifier_exists,
+                    "kwargs": kwargs,
+                }
+            )
+
+            if verifier_exists:
+                if instruction_id not in constraint_stats:
+                    constraint_stats[instruction_id] = {
+                        "total": 0,
+                        "passed": 0,
+                    }
+                constraint_stats[instruction_id]["total"] += 1
+                if best_pass:
+                    constraint_stats[instruction_id]["passed"] += 1
+
+        total_constraints += verified
+        total_passed += passed
+
+        accuracy = passed / verified if verified > 0 else None
+        results[str(key)] = {
+            "key": key,
+            "prompt": prompt,
+            "response": samples[0],
+            "num_samples": num_samples,
+            "num_constraints": len(instruction_ids),
+            "num_verified": verified,
+            "num_passed": passed,
+            "accuracy": round(accuracy, 4) if accuracy is not None else None,
+            "constraints": constraint_results,
+        }
+
+    overall_accuracy = (
+        round(total_passed / total_constraints, 4) if total_constraints > 0 else 0.0
+    )
+
+    type_summary = {}
+    for inst_id, stats in sorted(constraint_stats.items()):
+        type_summary[inst_id] = {
+            "total": stats["total"],
+            "passed": stats["passed"],
+            "accuracy": round(stats["passed"] / stats["total"], 4)
+            if stats["total"] > 0
+            else 0.0,
+        }
+
+    unsupported_count = sum(
+        1
+        for p in problems
+        for iid in p["instruction_id_list"]
+        if iid not in CONSTRAINT_VERIFIERS
+    )
+
+    results["_summary"] = {
+        "total_problems": len(problems),
+        "total_constraints": total_constraints,
+        "total_passed": total_passed,
+        "overall_accuracy": overall_accuracy,
+        "unsupported_constraints": unsupported_count,
+        "supported_types": sorted(CONSTRAINT_VERIFIERS.keys()),
+        "per_type_accuracy": type_summary,
+    }
+
+    return results
+
+
+def main():
+    parser = argparse.ArgumentParser(description="IFEval benchmark")
+    parser.add_argument(
+        "--param_path", type=str, default="./params", help="Model directory"
+    )
+    parser.add_argument(
+        "--data_path",
+        type=str,
+        default="./ifeval/input_data.jsonl",
+        help="IFEval JSONL file (auto-download if missing)",
+    )
+    parser.add_argument("--output", type=str, default=None, help="Output JSON path")
+    parser.add_argument(
+        "--max_tokens", type=int, default=512, help="Max generation tokens"
+    )
+    parser.add_argument(
+        "--temperature",
+        type=float,
+        default=0.1,
+        help="Sampling temperature",
+    )
+    parser.add_argument("--top_p", type=float, default=0.95, help="Top-p sampling")
+    parser.add_argument("--top_k", type=int, default=50, help="Top-k sampling")
+    parser.add_argument(
+        "--num_samples",
+        type=int,
+        default=1,
+        help="Number of samples per problem (best-of-n scoring)",
+    )
+    parser.add_argument(
+        "--batch_size", type=int, default=1, help="Inference batch size"
+    )
+    parser.add_argument(
+        "--limit",
+        type=int,
+        default=None,
+        help="Limit to first N problems (for quick testing)",
+    )
+    parser.add_argument(
+        "--dump_responses",
+        type=str,
+        default=None,
+        help="Path to dump raw model responses (JSONL)",
+    )
+    args = parser.parse_args()
+
+    download_ifeval(args.data_path)
+    problems = load_problems(args.data_path)
+    if args.limit:
+        problems = problems[: args.limit]
+
+    print(f"Loaded {len(problems)} problems")
+    print(f"Supported constraint types: {len(CONSTRAINT_VERIFIERS)}")
+
+    model = AutoModel.from_pretrained(args.param_path)
+    tokenizer = AutoTokenizer.from_pretrained(args.param_path)
+    model.to(device="cuda", dtype=torch.bfloat16)
+    model.eval()
+
+    engine = InferenceEngine(
+        model=model,
+        tokenizer=tokenizer,
+        max_batch_size=args.batch_size,
+    )
+
+    results = evaluate(
+        engine=engine,
+        tokenizer=tokenizer,
+        problems=problems,
+        max_tokens=args.max_tokens,
+        temperature=args.temperature,
+        top_p=args.top_p,
+        top_k=args.top_k,
+        num_samples=args.num_samples,
+    )
+
+    summary = results.pop("_summary")
+    print(f"\n{'=' * 60}")
+    print(f"  Problems:       {summary['total_problems']}")
+    print(f"  Constraints:    {summary['total_constraints']}")
+    print(f"  Passed:         {summary['total_passed']}")
+    print(f"  Accuracy:       {summary['overall_accuracy']:.2%}")
+    print(f"  Unsupported:    {summary['unsupported_constraints']}")
+    print(f"{'=' * 60}")
+
+    print("\nPer-type accuracy:")
+    for inst_id, stats in sorted(summary["per_type_accuracy"].items()):
+        print(
+            f"  {inst_id:50s}  {stats['accuracy']:.2%}  "
+            f"({stats['passed']}/{stats['total']})"
+        )
+
+    if args.output:
+        results["_summary"] = summary
+        with open(args.output, "w", encoding="utf-8") as f:
+            json.dump(results, f, indent=2, ensure_ascii=False)
+        print(f"\nResults saved to {args.output}")
+
+    if args.dump_responses:
+        with open(args.dump_responses, "w", encoding="utf-8") as f:
+            for k, v in results.items():
+                if k.startswith("_"):
+                    continue
+                f.write(
+                    json.dumps(
+                        {
+                            "key": v["key"],
+                            "prompt": v["prompt"],
+                            "response": v["response"],
+                        },
+                        ensure_ascii=False,
+                    )
+                    + "\n"
+                )
+        print(f"Responses dumped to {args.dump_responses}")
+
+    engine.shutdown()
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_mmlu.py

@@ -0,0 +1,319 @@
+"""MMLU evaluation via log-likelihood ranking."""
+
+import argparse
+import csv
+import json
+import os
+import shutil
+import tarfile
+
+import requests
+import torch
+import torch.nn.functional as F
+import tqdm
+
+from astrai.model import AutoModel
+from astrai.tokenize import AutoTokenizer
+
+MMLU_URL = "https://people.eecs.berkeley.edu/~hendrycks/data.tar"
+MMLU_SUBJECTS = [
+    "abstract_algebra",
+    "anatomy",
+    "astronomy",
+    "business_ethics",
+    "clinical_knowledge",
+    "college_biology",
+    "college_chemistry",
+    "college_computer_science",
+    "college_mathematics",
+    "college_medicine",
+    "college_physics",
+    "computer_security",
+    "conceptual_physics",
+    "econometrics",
+    "electrical_engineering",
+    "elementary_mathematics",
+    "formal_logic",
+    "global_facts",
+    "high_school_biology",
+    "high_school_chemistry",
+    "high_school_computer_science",
+    "high_school_european_history",
+    "high_school_geography",
+    "high_school_government_and_politics",
+    "high_school_macroeconomics",
+    "high_school_mathematics",
+    "high_school_microeconomics",
+    "high_school_physics",
+    "high_school_psychology",
+    "high_school_statistics",
+    "high_school_us_history",
+    "high_school_world_history",
+    "human_aging",
+    "human_sexuality",
+    "international_law",
+    "jurisprudence",
+    "logical_fallacies",
+    "machine_learning",
+    "management",
+    "marketing",
+    "medical_genetics",
+    "miscellaneous",
+    "moral_disputes",
+    "moral_scenarios",
+    "nutrition",
+    "philosophy",
+    "prehistory",
+    "professional_accounting",
+    "professional_law",
+    "professional_medicine",
+    "professional_psychology",
+    "public_relations",
+    "security_studies",
+    "sociology",
+    "us_foreign_policy",
+    "virology",
+    "world_religions",
+]
+
+
+def _download_and_extract(url: str, data_dir: str):
+    tar_path = os.path.join(data_dir, "data.tar")
+    os.makedirs(data_dir, exist_ok=True)
+    print(f"Downloading MMLU data from {url}...")
+    resp = requests.get(url, stream=True, timeout=300)
+    resp.raise_for_status()
+    total = int(resp.headers.get("content-length", 0))
+    with tqdm.tqdm(total=total, unit="B", unit_scale=True, desc="  Download") as bar:
+        with open(tar_path, "wb") as f:
+            for chunk in resp.iter_content(chunk_size=8192):
+                f.write(chunk)
+                bar.update(len(chunk))
+    print("Extracting...")
+    with tarfile.open(tar_path, "r") as tf:
+        tf.extractall(data_dir)
+    os.remove(tar_path)
+
+
+def download_mmlu(data_dir: str):
+    _download_and_extract(MMLU_URL, data_dir)
+    src = os.path.join(data_dir, "data")
+    if os.path.exists(src):
+        for item in os.listdir(src):
+            src_item = os.path.join(src, item)
+            dst_item = os.path.join(data_dir, item)
+            if os.path.exists(dst_item):
+                if os.path.isdir(dst_item):
+                    shutil.rmtree(dst_item)
+                else:
+                    os.remove(dst_item)
+            os.rename(src_item, dst_item)
+        os.rmdir(src)
+    print(f"MMLU data saved to {data_dir}")
+
+
+def _strip_prefix(text: str, prefix: str) -> str:
+    if text.startswith(prefix):
+        return text[len(prefix) :].strip()
+    return text
+
+
+def load_csv(path: str) -> list[dict]:
+    data = []
+    with open(path, "r", encoding="utf-8") as f:
+        for row in csv.reader(f):
+            if len(row) < 6:
+                continue
+            if row[0].strip().lower() == "question":
+                continue
+            data.append(
+                {
+                    "question": row[0].strip(),
+                    "A": _strip_prefix(row[1].strip(), "A)"),
+                    "B": _strip_prefix(row[2].strip(), "B)"),
+                    "C": _strip_prefix(row[3].strip(), "C)"),
+                    "D": _strip_prefix(row[4].strip(), "D)"),
+                    "answer": row[5].strip(),
+                }
+            )
+    return data
+
+
+def build_prompt(
+    question: str, choices: dict, subject: str, n_shot: int, dev_data: list[dict]
+) -> str:
+    prompt = ""
+    if n_shot > 0 and dev_data:
+        prompt = f"The following are multiple choice questions (with answers) about {subject}.\n\n"
+        for item in dev_data[:n_shot]:
+            prompt += f"Question: {item['question']}\n"
+            for k in ("A", "B", "C", "D"):
+                prompt += f"{k}. {item[k]}\n"
+            prompt += f"Answer: {item['answer']}\n\n"
+    prompt += f"Question: {question}\n"
+    for k in ("A", "B", "C", "D"):
+        prompt += f"{k}. {choices[k]}\n"
+    prompt += "Answer:"
+    return prompt
+
+
+def apply_chat(
+    tokenizer, raw_prompt: str, n_shot: int, dev_data: list[dict] | None
+) -> str:
+    """Wrap raw MMLU prompt in the model's chat template format.
+
+    For few-shot, prepend example Q&A pairs as a second user/assistant exchange.
+    """
+    messages = []
+    if n_shot > 0 and dev_data:
+        for item in dev_data[:n_shot]:
+            q = f"Question: {item['question']}\n"
+            for k in ("A", "B", "C", "D"):
+                q += f"{k}. {item[k]}\n"
+            q += "Answer:"
+            messages.append({"role": "user", "content": q})
+            messages.append({"role": "assistant", "content": item["answer"]})
+    messages.append({"role": "user", "content": raw_prompt})
+    return tokenizer.apply_chat_template(
+        messages, tokenize=False, add_generation_prompt=True
+    )
+
+
+def choice_logprob(
+    model, tokenizer, context_ids: list[int], choice_letter: str, device: str
+) -> float:
+    choice_text = choice_letter
+    choice_ids = tokenizer.encode(choice_text, add_special_tokens=False)
+    input_ids = context_ids + choice_ids
+    max_len = model.config.max_len
+    if len(input_ids) > max_len:
+        overflow = len(input_ids) - max_len
+        input_ids = input_ids[overflow:]
+        ctx_len = len(input_ids) - len(choice_ids)
+    else:
+        ctx_len = len(context_ids)
+
+    input_tensor = torch.tensor([input_ids], device=device, dtype=torch.long)
+    with torch.inference_mode():
+        logits = model(input_tensor)["logits"][0]
+
+    score = 0.0
+    for i, tid in enumerate(choice_ids):
+        pos = ctx_len - 1 + i
+        if pos >= len(logits):
+            break
+        score += F.log_softmax(logits[pos], dim=-1)[tid].item()
+    return score
+
+
+def evaluate_subject(
+    model,
+    tokenizer,
+    subject: str,
+    test_data: list[dict],
+    dev_data: list[dict] | None,
+    device: str,
+    n_shot: int,
+) -> tuple[float, int, int]:
+    correct = 0
+    total = 0
+    for item in tqdm.tqdm(test_data, desc=f"{subject:40s}", leave=False):
+        raw_prompt = build_prompt(
+            item["question"], item, subject, n_shot, dev_data or []
+        )
+        context = apply_chat(tokenizer, raw_prompt, n_shot, dev_data or [])
+        context_ids = tokenizer.encode(context)
+        scores = {
+            c: choice_logprob(model, tokenizer, context_ids, c, device)
+            for c in ("A", "B", "C", "D")
+        }
+        if max(scores, key=scores.get) == item["answer"]:
+            correct += 1
+        total += 1
+    return correct / total, correct, total
+
+
+def main():
+    parser = argparse.ArgumentParser(description="MMLU evaluation")
+    parser.add_argument(
+        "--param_path", type=str, default="./params", help="Model directory"
+    )
+    parser.add_argument(
+        "--data_dir", type=str, default="./mmlu_data", help="MMLU data directory"
+    )
+    parser.add_argument("--download", action="store_true", help="Download MMLU data")
+    parser.add_argument(
+        "--n_shot", type=int, default=5, help="Few-shot examples (0 for zero-shot)"
+    )
+    parser.add_argument(
+        "--subjects", type=str, nargs="+", help="Specific subjects (default: all)"
+    )
+    parser.add_argument("--output", type=str, help="Output JSON path")
+    parser.add_argument("--split", type=str, default="test", choices=["test", "val"])
+    parser.add_argument(
+        "--device",
+        type=str,
+        default="cuda" if torch.cuda.is_available() else "cpu",
+        help="Device",
+    )
+    parser.add_argument(
+        "--dtype",
+        type=str,
+        default="bfloat16" if torch.cuda.is_available() else "float32",
+        help="Torch dtype",
+    )
+    args = parser.parse_args()
+
+    if args.download or not os.path.exists(args.data_dir):
+        download_mmlu(args.data_dir)
+
+    model = AutoModel.from_pretrained(args.param_path)
+    tokenizer = AutoTokenizer.from_pretrained(args.param_path)
+    device = args.device
+    dtype = getattr(torch, args.dtype)
+    model.to(device=device, dtype=dtype)
+    model.eval()
+
+    subjects = args.subjects or MMLU_SUBJECTS
+    results = {}
+    total_correct = 0
+    total_questions = 0
+
+    for subject in subjects:
+        dev_path = os.path.join(args.data_dir, "dev", f"{subject}_dev.csv")
+        test_path = os.path.join(
+            args.data_dir, args.split, f"{subject}_{args.split}.csv"
+        )
+
+        if not os.path.exists(test_path):
+            print(f"  Skipping {subject}: test file not found")
+            continue
+
+        dev_data = load_csv(dev_path) if os.path.exists(dev_path) else None
+        test_data = load_csv(test_path)
+
+        acc, corr, tot = evaluate_subject(
+            model, tokenizer, subject, test_data, dev_data, device, args.n_shot
+        )
+        results[subject] = {"accuracy": round(acc, 4), "correct": corr, "total": tot}
+        total_correct += corr
+        total_questions += tot
+        print(f"  {subject:40s}  {acc:.2%}  ({corr}/{tot})")
+
+    overall = total_correct / total_questions if total_questions else 0
+    print(f"\n{'=' * 70}")
+    print(f"  Overall: {overall:.2%}  ({total_correct}/{total_questions})")
+    results["_overall"] = {
+        "accuracy": round(overall, 4),
+        "correct": total_correct,
+        "total": total_questions,
+    }
+
+    if args.output:
+        with open(args.output, "w", encoding="utf-8") as f:
+            json.dump(results, f, indent=2)
+        print(f"Results saved to {args.output}")
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_ppl.py

@@ -10,11 +10,11 @@ from astrai.tokenize import AutoTokenizer
 
 
 def process_file(
-    model_dir: str, input_file: str, output_file: str, batch_size: int, text_key: str
+    param_path: str, input_file: str, output_file: str, batch_size: int, text_key: str
 ):
     # Load model and tokenizer
-    model = AutoModel.from_pretrained(model_dir)
+    model = AutoModel.from_pretrained(param_path)
-    tokenizer = AutoTokenizer.from_pretrained(model_dir)
+    tokenizer = AutoTokenizer.from_pretrained(param_path)
     model.to(device="cuda", dtype=torch.bfloat16)
 
     with open(input_file, "r", encoding="utf-8") as f:
@@ -44,8 +44,8 @@ def process_file(
 
         for seq in batch_encoded:
             pad_len = max_len - len(seq)
-            padded_seq = [tokenizer.pad_id] * pad_len + seq
+            padded_seq = seq + [tokenizer.pad_id] * pad_len
-            mask = [False] * pad_len + [True] * len(seq)
+            mask = [True] * len(seq) + [False] * pad_len
             padded_ids.append(padded_seq)
             masks.append(mask)
 
@@ -86,9 +86,9 @@ def process_file(
 
 
 if __name__ == "__main__":
-    parser = argparse.ArgumentParser(description="Run perplexity with a Khaosz model.")
+    parser = argparse.ArgumentParser(description="Perplexity evaluation on JSONL text.")
     parser.add_argument(
-        "--model_dir", type=str, required=True, help="Path to the model directory."
+        "--param_path", type=str, required=True, help="Path to the model directory."
     )
     parser.add_argument(
         "--input_file", type=str, required=True, help="Path to the input file."

scripts/eval/evaluate_rouge.py

@@ -0,0 +1,153 @@
+"""ROUGE evaluation (manual implementation, no external deps).
+
+Computes ROUGE-1, ROUGE-2, ROUGE-L precision, recall, and F1.
+
+Usage::
+
+    # Batch evaluation from JSONL (each line: {"reference": ..., "candidate": ...})
+    python scripts/eval/evaluate_rouge.py --data_path preds.jsonl --output results.json
+
+    # As a library
+    from scripts.eval.evaluate_rouge import compute_rouge
+    scores = compute_rouge("the cat sat on the mat", "the cat sat")
+"""
+
+import argparse
+import json
+from collections import Counter
+from typing import Dict, List, Tuple
+
+
+def _tokenize(text: str) -> List[str]:
+    return text.split()
+
+
+def _ngrams(tokens: List[str], n: int) -> Counter:
+    return Counter(zip(*[tokens[i:] for i in range(n)]))
+
+
+def _lcs(x: List[str], y: List[str]) -> int:
+    m, n = len(x), len(y)
+    dp = [[0] * (n + 1) for _ in range(m + 1)]
+    for i in range(1, m + 1):
+        xi = x[i - 1]
+        dpi = dp[i]
+        dpi_1 = dp[i - 1]
+        for j in range(1, n + 1):
+            if xi == y[j - 1]:
+                dpi[j] = dpi_1[j - 1] + 1
+            else:
+                dpi[j] = dpi_1[j] if dpi_1[j] > dpi[j - 1] else dpi[j - 1]
+    return dp[m][n]
+
+
+def _f1(precision: float, recall: float) -> float:
+    if precision + recall == 0:
+        return 0.0
+    return 2 * precision * recall / (precision + recall)
+
+
+def _rouge_n(ref_tokens: List[str], cand_tokens: List[str], n: int) -> Dict[str, float]:
+    ref_ngrams = _ngrams(ref_tokens, n)
+    cand_ngrams = _ngrams(cand_tokens, n)
+
+    overlap = sum((cand_ngrams & ref_ngrams).values())
+    cand_total = sum(cand_ngrams.values())
+    ref_total = sum(ref_ngrams.values())
+
+    precision = overlap / cand_total if cand_total > 0 else 0.0
+    recall = overlap / ref_total if ref_total > 0 else 0.0
+    f1 = _f1(precision, recall)
+
+    return {"precision": precision, "recall": recall, "f1": f1}
+
+
+def _rouge_l(ref_tokens: List[str], cand_tokens: List[str]) -> Dict[str, float]:
+    lcs_len = _lcs(ref_tokens, cand_tokens)
+    ref_len = len(ref_tokens)
+    cand_len = len(cand_tokens)
+
+    recall = lcs_len / ref_len if ref_len > 0 else 0.0
+    precision = lcs_len / cand_len if cand_len > 0 else 0.0
+    f1 = _f1(precision, recall)
+
+    return {"precision": precision, "recall": recall, "f1": f1}
+
+
+def compute_rouge(
+    reference: str, candidate: str, n: int = 2
+) -> Dict[str, Dict[str, float]]:
+    """Compute ROUGE-N (1..n) and ROUGE-L scores.
+
+    Returns::
+
+        {
+            "rouge-1": {"precision": ..., "recall": ..., "f1": ...},
+            "rouge-2": {"precision": ..., "recall": ..., "f1": ...},
+            "rouge-l": {"precision": ..., "recall": ..., "f1": ...},
+        }
+    """
+    ref_tokens = _tokenize(reference)
+    cand_tokens = _tokenize(candidate)
+
+    results = {}
+    for i in range(1, n + 1):
+        results[f"rouge-{i}"] = _rouge_n(ref_tokens, cand_tokens, i)
+    results["rouge-l"] = _rouge_l(ref_tokens, cand_tokens)
+    return results
+
+
+def evaluate_file(data_path: str) -> Dict:
+    with open(data_path, "r", encoding="utf-8") as f:
+        pairs = [json.loads(line) for line in f if line.strip()]
+
+    agg = {
+        k: {"precision": 0.0, "recall": 0.0, "f1": 0.0}
+        for k in ("rouge-1", "rouge-2", "rouge-l")
+    }
+    per_item = []
+
+    for item in pairs:
+        ref = item["reference"]
+        cand = item["candidate"]
+        scores = compute_rouge(ref, cand)
+        per_item.append({**item, "scores": scores})
+        for k, v in scores.items():
+            agg[k]["precision"] += v["precision"]
+            agg[k]["recall"] += v["recall"]
+            agg[k]["f1"] += v["f1"]
+
+    n = len(pairs)
+    for k in agg:
+        agg[k] = {m: v / n for m, v in agg[k].items()}
+
+    return {"num_samples": n, "aggregate": agg, "per_item": per_item}
+
+
+def main():
+    parser = argparse.ArgumentParser(description="ROUGE evaluation")
+    parser.add_argument(
+        "--data_path", required=True, help="JSONL with reference/candidate per line"
+    )
+    parser.add_argument("--output", type=str, default=None, help="Output JSON path")
+    args = parser.parse_args()
+
+    results = evaluate_file(args.data_path)
+    agg = results["aggregate"]
+
+    print(f"Samples: {results['num_samples']}")
+    print()
+    for metric in ("rouge-1", "rouge-2", "rouge-l"):
+        s = agg[metric]
+        print(
+            f"  {metric:8s}  P={s['precision']:.4f}  R={s['recall']:.4f}  F1={s['f1']:.4f}"
+        )
+
+    if args.output:
+        with open(args.output, "w", encoding="utf-8") as f:
+            json.dump(results, f, indent=2, ensure_ascii=False)
+        print(f"\nSaved to {args.output}")
+
+
+if __name__ == "__main__":
+    main()

scripts/tools/generate.py

@@ -1,5 +1,6 @@
 import argparse
 import json
+from typing import Optional
 
 import torch
 
@@ -17,7 +18,7 @@ def processor(
     top_p: float,
     question_key: str,
     response_key: str,
-    max_tokens: int,
+    max_tokens: Optional[int],
     batch_size: int,
 ):
     # Load model and tokenizer
@@ -72,7 +73,7 @@ def processor(
 
 
 if __name__ == "__main__":
-    parser = argparse.ArgumentParser(description="Run generate with a Khaosz model.")
+    parser = argparse.ArgumentParser(description="Batch generation from JSONL file.")
 
     parser.add_argument(
         "--param_path", type=str, required=True, help="Path to the model directory."
@@ -93,36 +94,42 @@ if __name__ == "__main__":
         "--question_key",
         type=str,
         default="question",
-        help="Key for the question in the input JSON.",
+        help="Key for the question in the input JSON (default: question).",
     )
     parser.add_argument(
         "--response_key",
         type=str,
         default="response",
-        help="Key for the response in the output JSON.",
+        help="Key for the response in the output JSON (default: response).",
     )
     parser.add_argument(
         "--temperature",
         type=float,
         default=0.60,
-        help="Temperature for generating responses.",
+        help="Temperature for generating responses (default: 0.60).",
     )
     parser.add_argument(
-        "--top_k", type=int, default=30, help="Top-k value for generating responses."
+        "--top_k",
+        type=int,
+        default=30,
+        help="Top-k value for generating responses (default: 30).",
     )
     parser.add_argument(
         "--top_p",
         type=float,
         default=0.95,
-        help="Top-p value for generating responses.",
+        help="Top-p value for generating responses (default: 0.95).",
     )
     parser.add_argument(
-        "--batch_size", type=int, default=1, help="Batch size for generating responses."
+        "--batch_size",
+        type=int,
+        default=1,
+        help="Batch size for generating responses (default: 1).",
     )
     parser.add_argument(
         "--max_tokens",
         type=int,
-        default=2048,
+        default=None,
         help="Maximum tokens to generate (default: model config max_len).",
     )
 

scripts/tools/preprocess.py

@@ -0,0 +1,38 @@
+"""CLI: JSONL → tokenized .h5/.bin via config-driven Pipeline."""
+
+import argparse
+
+from astrai.config.preprocess_config import PipelineConfig
+from astrai.preprocessing.pipeline import Pipeline
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Raw JSONL → tokenized .h5/.bin via config-driven Pipeline"
+    )
+    parser.add_argument(
+        "inputs", nargs="+", metavar="JSONL", help="One or more JSONL files"
+    )
+    parser.add_argument("--output_dir", "-o", required=True, help="Output directory")
+    parser.add_argument(
+        "--config", "-c", required=True, help="Path to pipeline config JSON"
+    )
+    parser.add_argument(
+        "--tokenizer_path",
+        default="params",
+        help="Path to tokenizer directory (default: params)",
+    )
+    args = parser.parse_args()
+
+    config = PipelineConfig.from_file(args.config)
+
+    Pipeline(
+        config=config,
+        input_paths=args.inputs,
+        output_dir=args.output_dir,
+        tokenizer_path=args.tokenizer_path,
+    ).run()
+
+
+if __name__ == "__main__":
+    main()

scripts/tools/server.py

@@ -18,7 +18,7 @@ def main():
         "--reload", action="store_true", help="Enable auto-reload for development"
     )
     parser.add_argument(
-        "--param-path",
+        "--param_path",
         type=Path,
         default=None,
         help="Path to model parameters (default: project_root/params)",

scripts/tools/train.py

@@ -2,16 +2,13 @@ import argparse
 import os
 from functools import partial
 
-import safetensors.torch as st
 import torch
-import torch.nn as nn
 import torch.optim as optim
-from torch.nn.parallel import DistributedDataParallel as DDP
 
 from astrai.config import AutoRegressiveLMConfig, TrainConfig
 from astrai.dataset import DatasetFactory
 from astrai.model import AutoRegressiveLM
-from astrai.parallel import get_rank
+from astrai.model.components.decoder_block import DecoderBlock
 from astrai.trainer import SchedulerFactory, Trainer
 
 
@@ -116,9 +113,15 @@ def parse_args() -> argparse.Namespace:
     parser.add_argument(
         "--label_smoothing",
         type=float,
-        default=0.05,
+        default=0.0,
         help="cross_entropy function label smoothing parameter",
     )
+    parser.add_argument(
+        "--gradient_checkpointing",
+        action=argparse.BooleanOptionalAction,
+        default=False,
+        help="Enable activation checkpointing for DecoderBlock modules.",
+    )
 
     parser.add_argument(
         "--ckpt_interval",
@@ -132,6 +135,30 @@ def parse_args() -> argparse.Namespace:
         default="checkpoint",
         help="Directory to save checkpoints.",
     )
+    parser.add_argument(
+        "--val_split",
+        type=float,
+        default=None,
+        help="Ratio to split from training dataset for validation (e.g. 0.05).",
+    )
+    parser.add_argument(
+        "--val_step",
+        type=int,
+        default=1000,
+        help="Number of optimizer steps between validation runs.",
+    )
+    parser.add_argument(
+        "--metrics",
+        nargs="*",
+        default=["loss", "lr", "grad_norm"],
+        help="Metrics to log (e.g. --metrics loss lr val_loss). Default: loss lr grad_norm.",
+    )
+    parser.add_argument(
+        "--log_dir",
+        type=str,
+        default="checkpoint/logs",
+        help="Directory for metric logs.",
+    )
     parser.add_argument(
         "--grpo_sync_interval",
         type=int,
@@ -142,10 +169,38 @@ def parse_args() -> argparse.Namespace:
         "--start_epoch", type=int, default=0, help="Start epoch for training."
     )
     parser.add_argument(
-        "--start_batch", type=int, default=0, help="Start batch for training."
+        "--start_samples",
+        type=int,
+        default=0,
+        help="Start samples (per rank) for training.",
     )
 
+    parser.add_argument(
+        "--master_addr",
+        type=str,
+        default="localhost",
+        help="Master node address for distributed training.",
+    )
+    parser.add_argument(
+        "--master_port",
+        type=str,
+        default="29500",
+        help="Master node port for distributed training.",
+    )
+    parser.add_argument(
+        "--backend",
+        type=str,
+        default="nccl",
+        help="Distributed training backend.",
+    )
     parser.add_argument("--nprocs", type=int, default=1, help="Number of GPUs to use.")
+    parser.add_argument(
+        "--parallel_mode",
+        type=str,
+        default="none",
+        choices=["none", "ddp", "fsdp"],
+        help="Parallel training strategy (none, ddp, fsdp).",
+    )
     parser.add_argument(
         "--device_type", type=str, default="cuda", help="Device type to use."
     )
@@ -156,40 +211,82 @@ def parse_args() -> argparse.Namespace:
         choices=["spawn", "fork", "forkserver"],
         help="Multiprocessing start method.",
     )
+    parser.add_argument(
+        "--neftune_alpha",
+        type=float,
+        default=0.0,
+        help="NEFTune noise alpha (0=disabled, typical: 5.0).",
+    )
+
+    parser.add_argument(
+        "--schedule_type",
+        type=str,
+        default="cosine",
+        choices=["cosine", "sgdr", "wsd"],
+        help="Learning rate scheduler type.",
+    )
+    parser.add_argument(
+        "--min_rate",
+        type=float,
+        default=None,
+        help="Minimum LR as fraction of base LR. Uses scheduler default if not set (cosine/sgdr: 0.05, wsd: 0.0).",
+    )
+    parser.add_argument(
+        "--cycle_length",
+        type=int,
+        default=None,
+        help="SGDR first cycle length in steps. Defaults to total_steps - warmup_steps.",
+    )
+    parser.add_argument(
+        "--t_mult",
+        type=int,
+        default=2,
+        help="SGDR cycle length multiplier per restart.",
+    )
+    parser.add_argument(
+        "--stable_steps",
+        type=int,
+        default=None,
+        help="WSD stable plateau steps. Required when --schedule_type wsd.",
+    )
+    parser.add_argument(
+        "--decay_steps",
+        type=int,
+        default=None,
+        help="WSD decay steps. Defaults to total_steps - warmup_steps - stable_steps.",
+    )
 
     args = parser.parse_args()
 
     return args
 
 
-def ddp_wrap(model: nn.Module):
+def create_model(config):
-    local_rank = get_rank()
+    return AutoRegressiveLM(config).to(dtype=torch.bfloat16)
-    ddp_model = DDP(
-        model,
-        device_ids=[local_rank],
-        output_device=local_rank,
-        static_graph=True,
-        find_unused_parameters=False,
-        gradient_as_bucket_view=True,
-        broadcast_buffers=False,
-    )
-    return ddp_model
 
 
-def create_optimizer(model: nn.Module, **kwargs) -> optim.Optimizer:
+def create_optimizer(model, **kwargs) -> optim.Optimizer:
-    return optim.AdamW(model.parameters(), fused=True, **kwargs)
+    decay_params = []
+    no_decay_params = []
+    for name, param in model.named_parameters():
+        if not param.requires_grad:
+            continue
+        if param.dim() < 2 or "norm" in name or "bias" in name:
+            no_decay_params.append(param)
+        else:
+            decay_params.append(param)
+    param_groups = [
+        {"params": decay_params, "weight_decay": kwargs.pop("weight_decay", 0.01)},
+        {"params": no_decay_params, "weight_decay": 0.0},
+    ]
+    return optim.AdamW(param_groups, fused=True, **kwargs)
 
 
 def create_scheduler(
     optimizer: optim.Optimizer, **kwargs
 ) -> optim.lr_scheduler.LRScheduler:
-    return SchedulerFactory.create(optimizer, **kwargs)
+    schedule_type = kwargs.pop("schedule_type")
-
+    return SchedulerFactory.create(schedule_type, optimizer, **kwargs)
-
-def prepare_checkpoint(model: nn.Module) -> dict:
-    if isinstance(model, DDP):
-        return model.module.state_dict()
-    return model.state_dict()
 
 
 def compute_total_steps(
@@ -217,11 +314,15 @@ def train(
     n_epoch: int,
     batch_per_device: int,
     start_epoch: int,
-    start_batch: int,
+    start_samples: int,
     grad_accum_steps: int,
     warmup_ratio: float,
     ckpt_interval: int,
     ckpt_dir: str,
+    val_split: float,
+    val_step: int,
+    metrics: list[str],
+    log_dir: str,
     dpo_beta: float,
     grpo_clip_eps: float,
     grpo_kl_coef: float,
@@ -235,33 +336,37 @@ def train(
     random_seed: int,
     num_workers: int,
     pin_memory: bool,
+    gradient_checkpointing: bool,
     window_size: int,
     stride: int,
     nprocs: int,
+    parallel_mode: str,
     device_type: str,
+    backend: str,
+    master_addr: str,
+    master_port: str,
     start_method: str,
+    neftune_alpha: float,
+    schedule_type: str,
+    min_rate: float,
+    cycle_length: int,
+    t_mult: int,
+    stable_steps: int,
+    decay_steps: int,
 ):
     assert train_type in ["seq", "sft", "dpo", "grpo"]
     assert os.path.exists(param_path)
+    if nprocs > 1 and parallel_mode == "none":
+        raise ValueError("--nprocs > 1 requires --parallel_mode to be 'ddp' or 'fsdp'")
 
     # Load config
     config_path = os.path.join(param_path, "config.json")
     config = AutoRegressiveLMConfig.from_file(config_path)
+    config.neftune_alpha = neftune_alpha
 
     if window_size is None:
         window_size = config.max_len
 
-    # Create bare AutoRegressiveLM (for training, no tokenizer needed)
-    model = AutoRegressiveLM(config)
-
-    # Load weights if available
-    weights_path = os.path.join(param_path, "model.safetensors")
-    if os.path.exists(weights_path):
-        state_dict = st.load_file(weights_path)
-        model.load_state_dict(state_dict, strict=False)
-
-    model = model.to(dtype=torch.bfloat16)
-
     strategy_kwargs = {
         "beta": dpo_beta,
         "label_smoothing": label_smoothing,
@@ -271,6 +376,12 @@ def train(
         "sync_interval": grpo_sync_interval,
     }
 
+    executor_kwargs = {
+        "gradient_as_bucket_view": True,
+        "broadcast_buffers": False,
+    }
+
+    model_fn = partial(create_model, config)
     dataset = DatasetFactory.load(
         train_type=train_type,
         load_path=data_root_path,
@@ -291,18 +402,36 @@ def train(
         len(dataset), n_epoch, batch_per_device, nprocs, grad_accum_steps
     )
     warmup_steps = int(warmup_ratio * total_steps)
+    warmup_steps = min(warmup_steps, total_steps)
+
+    scheduler_kwargs = {"warmup_steps": warmup_steps}
+
+    if schedule_type == "cosine":
+        scheduler_kwargs["lr_decay_steps"] = total_steps - warmup_steps
+    elif schedule_type == "sgdr":
+        scheduler_kwargs["cycle_length"] = cycle_length or (total_steps - warmup_steps)
+        scheduler_kwargs["t_mult"] = t_mult
+    elif schedule_type == "wsd":
+        remaining = total_steps - warmup_steps
+        stable_steps_ = stable_steps or max(1, int(remaining * 0.8))
+        scheduler_kwargs["stable_steps"] = stable_steps_
+        scheduler_kwargs["decay_steps"] = max(
+            1, decay_steps or (remaining - stable_steps_)
+        )
+
+    if min_rate is not None:
+        scheduler_kwargs["min_rate"] = min_rate
 
     scheduler_fn = partial(
         create_scheduler,
-        **{
+        schedule_type=schedule_type,
-            "schedule_type": "cosine",
+        **scheduler_kwargs,
-            "warmup_steps": min(warmup_steps, total_steps),
-            "lr_decay_steps": total_steps - min(warmup_steps, total_steps),
-        },
     )
 
+    grad_ckpt_modules = [DecoderBlock] if gradient_checkpointing else []
+
     train_config = TrainConfig(
-        model=model,
+        model_fn=model_fn,
         strategy=train_type,
         dataset=dataset,
         optimizer_fn=optimizer_fn,
@@ -311,7 +440,7 @@ def train(
         n_epoch=n_epoch,
         batch_per_device=batch_per_device,
         start_epoch=start_epoch,
-        start_batch=start_batch,
+        start_samples=start_samples,
         ckpt_interval=ckpt_interval,
         grad_accum_steps=grad_accum_steps,
         max_grad_norm=max_grad_norm,
@@ -319,15 +448,24 @@ def train(
         num_workers=num_workers,
         pin_memory=pin_memory,
         nprocs=nprocs,
-        parallel_wrapper=ddp_wrap,
+        backend=backend,
-        state_dict_fn=prepare_checkpoint,
+        master_addr=master_addr,
+        master_port=master_port,
+        parallel_mode=parallel_mode,
         device_type=device_type,
         start_method=start_method,
+        val_split=val_split,
+        val_step=val_step,
+        metrics=metrics,
+        log_dir=log_dir,
+        gradient_checkpointing_modules=grad_ckpt_modules,
+        executor_kwargs=executor_kwargs,
         extra_kwargs=strategy_kwargs,
+        neftune_alpha=neftune_alpha,
     )
 
     trainer = Trainer(train_config)
-    trainer.train()
+    trainer.train(resume_dir=param_path)
 
 
 if __name__ == "__main__":

tests/conftest.py

@@ -75,7 +75,7 @@ class MultiTurnDataset(Dataset):
 
 
 class EarlyStoppingDataset(Dataset):
-    """Dataset that triggers early stopping after a specified number of iterations."""
+    """Dataset that triggers early stopping after consuming a specified number of samples."""
 
     def __init__(self, length=10, stop_after=5):
         self.length = length

tests/data/conftest.py

@@ -0,0 +1,235 @@
+import json
+import os
+import tempfile
+
+import pytest
+from tokenizers import Tokenizer, models, pre_tokenizers, trainers
+
+from astrai.config.preprocess_config import (
+    InputConfig,
+    PipelineConfig,
+    ProcessingConfig,
+)
+from astrai.preprocessing.builder import SectionedMaskBuilder
+from astrai.tokenize import AutoTokenizer
+
+_SPECIAL_TOKENS_CONFIG = {
+    "bos_token": "<|begin_of_sentence|>",
+    "eos_token": "<|end_of_sentence|>",
+    "pad_token": "<|_pad_|>",
+    "unk_token": "<|_unk_|>",
+    "im_start": "<|im_start|>",
+    "im_end": "<|im_end|>",
+}
+
+_SPECIAL_TOKENS = list(_SPECIAL_TOKENS_CONFIG.values())
+
+_CHAT_TEMPLATE = (
+    "{% for message in messages %}"
+    "{% if message['role'] == 'system' %}"
+    "<|im_start|>system\n{{ message['content'] }}<|im_end|>\n"
+    "{% elif message['role'] == 'user' %}"
+    "<|im_start|>user\n{{ message['content'] }}<|im_end|>\n"
+    "{% elif message['role'] == 'assistant' %}"
+    "<|im_start|>assistant\n{{ message['content'] }}<|im_end|>\n"
+    "{% endif %}"
+    "{% endfor %}"
+    "{% if add_generation_prompt %}<|im_start|>assistant\n{% endif %}"
+)
+
+_CHAT_SECTIONS = [{"field": "messages", "action": "$role", "template": True}]
+
+_INSTRUCTION_SECTIONS = [
+    {"field": "prompt", "action": "mask", "add_special_tokens": True},
+    {"field": "response", "action": "train"},
+]
+
+_TEXT_SECTIONS = [{"field": "text", "action": "train"}]
+
+_GRPO_RESPONSE_SECTIONS = [{"field": "responses", "action": "train"}]
+
+
+def _build_chat_tokenizer():
+    tok = Tokenizer(models.BPE())
+    tok.pre_tokenizer = pre_tokenizers.ByteLevel(add_prefix_space=False)
+    tr = trainers.BpeTrainer(
+        vocab_size=512,
+        min_frequency=1,
+        special_tokens=_SPECIAL_TOKENS,
+    )
+    train_data = [
+        "hello world",
+        "Hi there!",
+        "You are helpful.",
+        "What is 2+2?",
+        "Tell me a story about dragons and knights.",
+        "Sure, here is a tale.",
+        "Translate to French: Hello",
+        "Bonjour",
+        "Artificial Intelligence is a field of computer science.",
+        "system",
+        "user",
+        "assistant",
+        "<|im_start|>",
+        "<|im_end|>",
+        *[chr(i) for i in range(32, 127)],
+    ]
+    tok.train_from_iterator(train_data, tr)
+
+    auto_tok = AutoTokenizer()
+    auto_tok._tokenizer = tok
+    auto_tok._special_token_map = {
+        "bos_token": "<|begin_of_sentence|>",
+        "eos_token": "<|end_of_sentence|>",
+        "pad_token": "<|_pad_|>",
+        "unk_token": "<|_unk_|>",
+    }
+    auto_tok.set_chat_template(_CHAT_TEMPLATE)
+    return auto_tok
+
+
+@pytest.fixture(scope="session")
+def chat_tokenizer():
+    return _build_chat_tokenizer()
+
+
+@pytest.fixture
+def temp_dir():
+    d = tempfile.mkdtemp()
+    yield d
+    import shutil
+
+    shutil.rmtree(d, ignore_errors=True)
+
+
+def make_chat_config():
+    return PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask={"system": "mask", "user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+
+
+def make_instruction_config():
+    return PipelineConfig(
+        input=InputConfig(sections=_INSTRUCTION_SECTIONS),
+        mask={"prompt": "mask", "response": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+
+
+def make_text_config():
+    return PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(
+            max_seq_len=2048, min_chars=1, max_chars=2_000_000
+        ),
+    )
+
+
+def make_dpo_chat_config():
+    return PipelineConfig(
+        input=InputConfig(
+            sources={
+                "chosen": {
+                    "sections": [
+                        {"field": "chosen", "action": "$role", "template": True}
+                    ]
+                },
+                "rejected": {
+                    "sections": [
+                        {"field": "rejected", "action": "$role", "template": True}
+                    ]
+                },
+            }
+        ),
+        mask={"user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+
+
+def make_grpo_config():
+    return PipelineConfig(
+        input=InputConfig(
+            sources={
+                "prompts": {
+                    "sections": [
+                        {"field": "prompt", "action": "mask", "template": True}
+                    ]
+                },
+                "responses": {
+                    "sections": _GRPO_RESPONSE_SECTIONS,
+                    "list_field": True,
+                    "mask_key": "masks",
+                },
+                "rewards": {
+                    "sections": [{"field": "rewards", "action": "value"}],
+                },
+            }
+        ),
+        mask={"user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+
+
+def make_grpo_no_template_config():
+    return PipelineConfig(
+        input=InputConfig(
+            sources={
+                "prompts": {
+                    "sections": [
+                        {
+                            "field": "prompt",
+                            "action": "mask",
+                            "add_special_tokens": True,
+                        }
+                    ]
+                },
+                "responses": {
+                    "sections": _GRPO_RESPONSE_SECTIONS,
+                    "list_field": True,
+                    "mask_key": "masks",
+                },
+                "rewards": {
+                    "sections": [{"field": "rewards", "action": "value"}],
+                },
+            }
+        ),
+        mask={"user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+
+
+@pytest.fixture
+def builder():
+    return SectionedMaskBuilder()
+
+
+@pytest.fixture
+def tokenizer_dir(temp_dir, test_tokenizer):
+    d = os.path.join(temp_dir, "tok")
+    os.makedirs(d, exist_ok=True)
+    test_tokenizer._tokenizer.save(os.path.join(d, "tokenizer.json"))
+    with open(os.path.join(d, "tokenizer_config.json"), "w") as f:
+        json.dump(
+            {"special_tokens": {"pad_token": "<|_pad_|>", "unk_token": "<|_unk_|>"}}, f
+        )
+    return d
+
+
+@pytest.fixture
+def chat_tokenizer_dir(temp_dir, chat_tokenizer):
+    d = os.path.join(temp_dir, "tok")
+    os.makedirs(d, exist_ok=True)
+    chat_tokenizer._tokenizer.save(os.path.join(d, "tokenizer.json"))
+    with open(os.path.join(d, "tokenizer_config.json"), "w") as f:
+        json.dump(
+            {"special_tokens": _SPECIAL_TOKENS_CONFIG, "chat_template": _CHAT_TEMPLATE},
+            f,
+        )
+    return d

tests/data/test_checkpoint.py

@@ -1,3 +1,4 @@
+import os
 import tempfile
 
 import torch
@@ -24,7 +25,9 @@ def test_single_process():
 
         scheduler.step()
 
-    checkpoint = Checkpoint(state_dict=model.state_dict(), epoch=3, iteration=30)
+    checkpoint = Checkpoint(
+        state_dict=model.state_dict(), epoch=3, consumed_samples=120
+    )
 
     with tempfile.TemporaryDirectory() as tmpdir:
         checkpoint.save(tmpdir)
@@ -32,11 +35,10 @@ def test_single_process():
         loaded_checkpoint = Checkpoint.load(tmpdir)
 
         assert loaded_checkpoint.epoch == 3
-        assert loaded_checkpoint.iteration == 30
+        assert loaded_checkpoint.consumed_samples == 120
 
 
 def test_checkpoint_with_extra():
-    """Verify extra keys are saved as individual .pt files and loaded back."""
     model = torch.nn.Linear(10, 5)
     optimizer = AdamW(model.parameters(), lr=1e-3)
     optimizer.step()
@@ -46,14 +48,15 @@ def test_checkpoint_with_extra():
         "scheduler": {"last_epoch": 5},
     }
     checkpoint = Checkpoint(
-        state_dict=model.state_dict(), epoch=1, iteration=10, extra=extra
+        state_dict=model.state_dict(),
+        epoch=1,
+        consumed_samples=40,
+        extra=extra,
     )
 
     with tempfile.TemporaryDirectory() as tmpdir:
         checkpoint.save(tmpdir)
 
-        import os
-
         assert os.path.exists(os.path.join(tmpdir, "optimizer.pt"))
         assert os.path.exists(os.path.join(tmpdir, "scheduler.pt"))
 
@@ -79,7 +82,7 @@ def simple_training():
     checkpoint = Checkpoint(
         state_dict=model.state_dict(),
         epoch=2,
-        iteration=10,
+        consumed_samples=40,
     )
 
     rank = get_rank()

tests/data/test_dataset.py

@@ -5,40 +5,81 @@ import numpy as np
 import pytest
 import torch
 
+from astrai.config.preprocess_config import PipelineConfig
 from astrai.dataset.dataset import DatasetFactory, SEQDataset
 from astrai.dataset.storage import (
-    BaseSegmentFetcher,
+    H5Store,
-    H5Storage,
+    StoreFactory,
-    MultiSegmentFetcher,
-    StorageFactory,
     detect_format,
-    load_json,
+)
+from astrai.serialization import (
+    load_bin,
+    save_bin,
     save_h5,
 )
 
 
+def _rand_seq(length, vocab=1000):
+    return torch.randint(0, vocab, (length,), dtype=torch.int64)
+
+
+def _save_test_tokenizer(test_dir, tokenizer):
+    tokenizer_path = os.path.join(test_dir, "tokenizer")
+    os.makedirs(tokenizer_path, exist_ok=True)
+    tokenizer.save_pretrained(tokenizer_path)
+    return tokenizer_path
+
+
+def _write_jsonl_dataset(test_dir, tokenizer_path, records, config_overrides=None):
+    data_dir = os.path.join(test_dir, "jsonl_data")
+    os.makedirs(data_dir, exist_ok=True)
+
+    with open(os.path.join(data_dir, "data.jsonl"), "w", encoding="utf-8") as f:
+        for record in records:
+            f.write(json.dumps(record, ensure_ascii=False) + "\n")
+
+    config = {
+        "tokenizer_path": tokenizer_path,
+        "version": 1,
+        "input": {"sections": [{"field": "text", "action": "train"}]},
+        "preprocessing": {"max_seq_len": 128},
+        "output": {"position_ids_mode": "continuous"},
+    }
+    if config_overrides:
+        config.update(config_overrides)
+
+    with open(
+        os.path.join(data_dir, "dataset_config.json"), "w", encoding="utf-8"
+    ) as f:
+        json.dump(config, f, ensure_ascii=False, indent=2)
+
+    return data_dir
+
+
+def _make_seq_dataset(
+    test_dir, name="data", seq_length=200, train_type="seq", data=None, **load_kwargs
+):
+    if data is None:
+        data = {"sequence": [_rand_seq(seq_length)]}
+    save_h5(test_dir, name, data)
+    return DatasetFactory.load(
+        train_type,
+        test_dir,
+        window_size=load_kwargs.pop("window_size", 64),
+        **load_kwargs,
+    )
+
+
 def test_dataset_loader_random_paths(base_test_env):
     """Test dataset loader with multiple random paths"""
     test_dir = base_test_env["test_dir"]
 
-    # Create multiple mmap dataset directories with random data
     num_files = np.random.randint(2, 5)
-
     for i in range(num_files):
         seq_length = np.random.randint(200, 400)
-        dummy_data = {
+        dummy_data = {"sequence": [_rand_seq(seq_length) for _ in range(10)]}
-            "sequence": [
+        loaded_dataset = _make_seq_dataset(
-                torch.randint(0, 1000, (seq_length,), dtype=torch.int64)
+            test_dir, f"data_{i}", seq_length, data=dummy_data
-                for _ in range(10)
-            ],
-        }
-        save_h5(test_dir, f"data_{i}", dummy_data)
-
-        # Test loading with multiple paths
-        loaded_dataset = DatasetFactory.load(
-            train_type="seq",
-            load_path=test_dir,
-            window_size=64,
         )
         assert loaded_dataset is not None
         assert len(loaded_dataset) > 0
@@ -56,23 +97,15 @@ def test_dpo_strategy_with_random_data(base_test_env):
     """Test DPO strategy with randomized preference data"""
     test_dir = base_test_env["test_dir"]
 
-    # Create DPO-style data with memory mapping format
     seq_length = np.random.randint(100, 200)
-
     dummy_data = {
-        "chosen": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "chosen": [_rand_seq(seq_length)],
-        "rejected": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "rejected": [_rand_seq(seq_length)],
         "chosen_mask": [torch.ones(seq_length, dtype=torch.bool)],
         "rejected_mask": [torch.ones(seq_length, dtype=torch.bool)],
     }
-
+    dpo_dataset = _make_seq_dataset(
-    save_h5(test_dir, "dpo_data", dummy_data)
+        test_dir, "dpo_data", seq_length, train_type="dpo", data=dummy_data
-
-    # Load DPO dataset
-    dpo_dataset = DatasetFactory.load(
-        train_type="dpo",
-        load_path=test_dir,
-        window_size=64,
     )
 
     assert dpo_dataset is not None
@@ -94,21 +127,14 @@ def test_sft_dataset_with_random_data(base_test_env):
     """Test SFT dataset with random data"""
     test_dir = base_test_env["test_dir"]
 
-    # Create SFT-style data with memory mapping format
     seq_length = np.random.randint(100, 200)
-
     dummy_data = {
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "sequence": [_rand_seq(seq_length)],
         "loss_mask": [torch.ones(seq_length, dtype=torch.bool)],
+        "position_ids": [torch.arange(seq_length, dtype=torch.int32)],
     }
-
+    sft_dataset = _make_seq_dataset(
-    save_h5(test_dir, "sft_data", dummy_data)
+        test_dir, "sft_data", seq_length, train_type="sft", data=dummy_data
-
-    # Load SFT dataset
-    sft_dataset = DatasetFactory.load(
-        train_type="sft",
-        load_path=test_dir,
-        window_size=64,
     )
 
     assert sft_dataset is not None
@@ -129,25 +155,11 @@ def test_dataset_with_custom_stride(base_test_env):
     """Test dataset with custom stride parameter"""
     test_dir = base_test_env["test_dir"]
 
-    # Create test data
-    seq_length = 200
-    dummy_data = {
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
-    }
-
-    save_h5(test_dir, "stride_test_data", dummy_data)
-
-    # Test with custom stride
     custom_stride = 32
-    dataset = DatasetFactory.load(
+    dataset = _make_seq_dataset(test_dir, "stride_test_data", stride=custom_stride)
-        train_type="seq", load_path=test_dir, window_size=64, stride=custom_stride
-    )
-
     assert dataset is not None
     assert len(dataset) > 0
 
-    # With stride 32 and window 64 on 200 length data, we should get more samples
-    # than with default stride (which equals window size)
     default_stride_dataset = DatasetFactory.load(
         train_type="seq",
         load_path=test_dir,
@@ -157,131 +169,12 @@ def test_dataset_with_custom_stride(base_test_env):
     assert len(dataset) > len(default_stride_dataset)
 
 
-# ============== JSON Storage Tests (raw text + tokenizer) ==============
-
-
-def _make_tokenizer_fn(tokenizer):
-    """Wrap tokenizer.encode() as a str -> List[int] callable."""
-    return lambda text: tokenizer.encode(text, add_special_tokens=False)
-
-
-def test_seq_dataset_from_json_text(base_test_env):
-    """Test loading SEQ dataset from raw-text JSON with tokenizer"""
-    tokenizer = base_test_env["tokenizer"]
-    tokenizer_fn = _make_tokenizer_fn(tokenizer)
-    test_dir = base_test_env["test_dir"]
-    data_dir = os.path.join(test_dir, "json_text")
-    os.makedirs(data_dir, exist_ok=True)
-
-    texts = [
-        "hello world this is a test sentence for tokenizer",
-        "another sentence with different words and tokens",
-        "machine learning is fascinating and powerful",
-    ]
-
-    json_path = os.path.join(data_dir, "seq_data.json")
-    with open(json_path, "w", encoding="utf-8") as f:
-        json.dump({"sequence": texts}, f, ensure_ascii=False)
-
-    dataset = DatasetFactory.load(
-        train_type="seq",
-        load_path=data_dir,
-        window_size=16,
-        tokenizer=tokenizer_fn,
-    )
-    assert dataset is not None
-    assert len(dataset) > 0
-    assert dataset.count > 0
-    assert "sequence" in dataset.keys
-
-    item = dataset[0]
-    assert "input_ids" in item
-    assert "target_ids" in item
-    assert item["input_ids"].shape[0] == 16
-
-
-def test_sft_dataset_from_json_text(base_test_env):
-    """Test loading SFT dataset from raw-text JSON with tokenizer"""
-    tokenizer = base_test_env["tokenizer"]
-    tokenizer_fn = _make_tokenizer_fn(tokenizer)
-    test_dir = base_test_env["test_dir"]
-    data_dir = os.path.join(test_dir, "json_sft")
-    os.makedirs(data_dir, exist_ok=True)
-
-    texts = [
-        "user asks a question about the weather",
-        "assistant provides a helpful response to the user",
-    ]
-
-    json_path = os.path.join(data_dir, "sft_data.json")
-    with open(json_path, "w", encoding="utf-8") as f:
-        json.dump(
-            {"sequence": texts, "loss_mask": texts},
-            f,
-            ensure_ascii=False,
-        )
-
-    dataset = DatasetFactory.load(
-        train_type="sft",
-        load_path=data_dir,
-        window_size=16,
-        tokenizer=tokenizer_fn,
-    )
-    assert dataset is not None
-    assert len(dataset) > 0
-
-    item = dataset[0]
-    assert "loss_mask" in item
-
-
-def test_json_storage_explicit_tokenizer(base_test_env):
-    """Test explicit JSON storage with tokenizer"""
-    tokenizer = base_test_env["tokenizer"]
-    tokenizer_fn = _make_tokenizer_fn(tokenizer)
-    test_dir = base_test_env["test_dir"]
-    data_dir = os.path.join(test_dir, "json_explicit")
-    os.makedirs(data_dir, exist_ok=True)
-
-    texts = ["abcdefghijklmnopqrstuvwxyz" * 10]
-
-    json_path = os.path.join(data_dir, "data.json")
-    with open(json_path, "w", encoding="utf-8") as f:
-        json.dump({"sequence": texts}, f, ensure_ascii=False)
-
-    token_count = len(tokenizer_fn(texts[0]))
-
-    dataset = DatasetFactory.load(
-        train_type="seq",
-        load_path=data_dir,
-        window_size=32,
-        storage_type="json",
-        tokenizer=tokenizer_fn,
-    )
-    assert dataset is not None
-    assert len(dataset) > 0
-    assert dataset.count == token_count
-
-
 def test_dataset_count_property(base_test_env):
-    """Test the count property returns correct raw token count"""
     test_dir = base_test_env["test_dir"]
-
+    dataset = _make_seq_dataset(test_dir, "count_test_data")
-    seq_length = 200
+    assert dataset.count == 200
-    dummy_data = {
+    assert dataset.count > len(dataset)
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+    assert len(dataset) == (200 - 1 - 64) // 64 + 1
-    }
-
-    save_h5(test_dir, "count_test_data", dummy_data)
-
-    dataset = DatasetFactory.load(
-        train_type="seq",
-        load_path=test_dir,
-        window_size=64,
-    )
-
-    assert dataset.count == seq_length
-    assert dataset.count > len(dataset)  # raw tokens > windows
-    assert len(dataset) == (seq_length - 1 - 64) // 64 + 1
 
 
 def test_empty_dataset_count():
@@ -292,17 +185,10 @@ def test_empty_dataset_count():
 
 
 def test_dataset_too_short_for_window(base_test_env):
-    """Dataset shorter than window_size returns __len__ == 0"""
     test_dir = base_test_env["test_dir"]
-    seq_length = 30
+    dataset = _make_seq_dataset(test_dir, "short", seq_length=30)
-    save_h5(
-        test_dir,
-        "short",
-        {"sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)]},
-    )
-    dataset = DatasetFactory.load("seq", test_dir, window_size=64)
     assert len(dataset) == 0
-    assert dataset.count == seq_length
+    assert dataset.count == 30
 
 
 def test_unloaded_dataset_getitem_raises():
@@ -318,37 +204,25 @@ def test_unloaded_dataset_len():
     assert len(dataset) == 0
 
 
-def test_base_segment_fetcher_empty():
+def test_store_unloaded_len():
-    """BaseSegmentFetcher with empty segments list"""
+    """Unloaded Store has __len__ == 0"""
-    fetcher = BaseSegmentFetcher([])
+    store = H5Store()
-    assert len(fetcher) == 0
+    assert len(store) == 0
-    with pytest.raises(ValueError, match="out of bounds"):
+    assert store.keys == []
-        fetcher.fetch_data(0, 1)
 
 
-def test_base_segment_fetcher_begin_equals_end(base_test_env):
+def test_store_fetch_begin_equals_end(base_test_env):
-    """fetch_data with begin == end returns empty tensor"""
     test_dir = base_test_env["test_dir"]
-    dummy = {"sequence": [torch.randint(0, 1000, (100,), dtype=torch.int64)]}
+    dataset = _make_seq_dataset(test_dir, "empty_fetch", seq_length=100, window_size=32)
-    save_h5(test_dir, "empty_fetch", dummy)
+    result = dataset.storage.fetch(10, 10, "sequence")
-
-    dataset = DatasetFactory.load("seq", test_dir, window_size=32)
-    fetcher = dataset.storage._fetcher.multi_fetchers["sequence"]
-    result = fetcher.fetch_data(10, 10)
     assert result.numel() == 0
 
 
-def test_multi_segment_fetcher_empty_dict():
+def test_store_fetch_before_load():
-    """MultiSegmentFetcher with empty dict has __len__ == 0"""
+    """Store.fetch before load raises RuntimeError"""
-    fetcher = MultiSegmentFetcher({})
+    store = H5Store()
-    assert len(fetcher) == 0
-
-
-def test_storage_fetch_before_load():
-    """BaseStorage.fetch before load raises RuntimeError"""
-    storage = H5Storage()
     with pytest.raises(RuntimeError, match="not loaded"):
-        storage.fetch(0, 10, "sequence")
+        store.fetch(0, 10, "sequence")
 
 
 def test_detect_format_nonexistent_path():
@@ -367,54 +241,274 @@ def test_detect_format_unsupported_file(base_test_env):
         detect_format(path)
 
 
-def test_create_storage_invalid_type():
+def test_create_store_invalid_type():
-    """StorageFactory.create raises ValueError for unknown type"""
+    """StoreFactory.create raises ValueError for unknown type"""
     with pytest.raises(ValueError, match="Unknown component"):
-        StorageFactory.create("parquet")
+        StoreFactory.create("parquet")
 
 
-def test_json_pretokenized_without_tokenizer(base_test_env):
+def test_store_multi_segment_concat(base_test_env):
-    """Pre-tokenized JSON (List[List[int]]) loads without tokenizer"""
+    """Multi-segment H5 data is concatenated into single tensor at load time"""
+    import os
+
     test_dir = base_test_env["test_dir"]
-    data_dir = os.path.join(test_dir, "json_pretok")
+    data_dir = os.path.join(test_dir, "multi_seg")
     os.makedirs(data_dir, exist_ok=True)
 
-    json_path = os.path.join(data_dir, "data.json")
-    with open(json_path, "w", encoding="utf-8") as f:
-        json.dump({"sequence": [[1, 2, 3, 4, 5], [6, 7, 8, 9, 10]]}, f)
-
-    dataset = DatasetFactory.load("seq", data_dir, window_size=4, storage_type="json")
-    assert len(dataset) > 0
-    assert dataset.count == 10
-
-    item = dataset[0]
-    assert item["input_ids"].tolist() == [1, 2, 3, 4]
-    assert item["target_ids"].tolist() == [2, 3, 4, 5]
-
-
-def test_load_json_skips_config_file(base_test_env):
-    """load_json skips scalar-value config files"""
-    test_dir = base_test_env["test_dir"]
-    with open(os.path.join(test_dir, "config.json"), "w") as f:
-        json.dump({"vocab_size": 1000, "dim": 16}, f)
-
-    with open(os.path.join(test_dir, "data.json"), "w") as f:
-        json.dump({"sequence": [[1, 2, 3, 4, 5]]}, f)
-
-    result = load_json(test_dir)
-    assert "sequence" in result
-    assert "vocab_size" not in result
-    assert len(result["sequence"]) == 1
-
-
-def test_base_segment_fetcher_multi_segment():
-    """fetch_data across multiple segment boundaries"""
     segs = [
         torch.tensor([1, 2, 3]),
         torch.tensor([4, 5, 6, 7]),
         torch.tensor([8, 9]),
     ]
-    fetcher = BaseSegmentFetcher(segs)
+    save_h5(data_dir, "data", {"sequence": segs})
-    assert len(fetcher) == 9
+
-    result = fetcher.fetch_data(2, 7)
+    store = StoreFactory.create("h5")
+    store.load(data_dir)
+    assert len(store) == 9
+    result = store.fetch(2, 7, "sequence")
     assert result.tolist() == [3, 4, 5, 6, 7]
+
+
+def test_save_load_bin_roundtrip(base_test_env):
+    """save_bin + load_bin roundtrip preserves data"""
+    test_dir = base_test_env["test_dir"]
+
+    data = {
+        "sequence": [torch.tensor([1, 2, 3, 4, 5], dtype=torch.int64)],
+        "loss_mask": [torch.tensor([0, 1, 1, 0, 1], dtype=torch.int64)],
+    }
+    save_bin(test_dir, data)
+    result = load_bin(test_dir)
+
+    assert "sequence" in result
+    assert "loss_mask" in result
+    assert result["sequence"][0].tolist() == [1, 2, 3, 4, 5]
+    assert result["loss_mask"][0].tolist() == [0, 1, 1, 0, 1]
+
+
+def test_mmap_store_load_and_fetch(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    data = {"sequence": [_rand_seq(200)]}
+    save_bin(test_dir, data)
+
+    store = StoreFactory.create("bin")
+    store.load(test_dir)
+    assert len(store) == 200
+    assert "sequence" in store.keys
+
+    result = store.fetch(10, 20, "sequence")
+    assert result.tolist() == data["sequence"][0][10:20].tolist()
+
+
+def test_mmap_dataset_load(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    data = {"sequence": [_rand_seq(200)]}
+    save_bin(test_dir, data)
+    dataset = DatasetFactory.load("seq", test_dir, window_size=64)
+    assert len(dataset) > 0
+    assert dataset.count == 200
+    assert dataset[0]["input_ids"].shape[0] == 64
+
+
+def test_normalize_empty_key():
+    """_normalize with empty tensor list does not crash"""
+    store = H5Store()
+    store._normalize({"sequence": []})
+    assert len(store) == 0
+    assert store.keys == ["sequence"]
+
+
+def test_normalize_mixed_empty_key():
+    """_normalize with empty + non-empty keys returns min=0"""
+    store = H5Store()
+    store._normalize({"sequence": [torch.tensor([1, 2, 3])], "loss_mask": []})
+    assert len(store) == 0
+    assert set(store.keys) == {"sequence", "loss_mask"}
+
+
+def test_grpo_dataset_dtype(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    dummy_data = {
+        "prompts": [torch.randint(0, 100, (100,), dtype=torch.int32)],
+        "responses": [torch.randint(0, 100, (100,), dtype=torch.int32)],
+        "masks": [torch.ones(100, dtype=torch.int32)],
+        "rewards": [torch.ones(100, dtype=torch.float32)],
+    }
+    dataset = _make_seq_dataset(
+        test_dir, "grpo_dtype", train_type="grpo", data=dummy_data, window_size=32
+    )
+    item = dataset[0]
+
+    assert item["prompts"].dtype == torch.long
+    assert item["responses"].dtype == torch.long
+    assert item["masks"].dtype == torch.bool
+    assert item["rewards"].dtype == torch.float32
+
+
+def test_grpo_dataset_load(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    dummy_data = {
+        "prompts": [_rand_seq(200)],
+        "responses": [_rand_seq(200)],
+        "masks": [torch.ones(200, dtype=torch.int64)],
+        "rewards": [torch.rand(200, dtype=torch.float32)],
+    }
+    dataset = _make_seq_dataset(
+        test_dir, "grpo_test", train_type="grpo", data=dummy_data
+    )
+    assert len(dataset) > 0
+    item = dataset[0]
+    assert "prompts" in item
+    assert "responses" in item
+    assert "masks" in item
+    assert "rewards" in item
+    assert item["prompts"].shape[0] == 64
+    assert item["responses"].shape[0] == 64
+
+
+def test_detect_format_bin_dir(base_test_env):
+    """detect_format returns 'bin' for directory with .bin + meta.json"""
+    test_dir = base_test_env["test_dir"]
+    save_bin(test_dir, {"sequence": [torch.randint(0, 100, (10,))]})
+    assert detect_format(test_dir) == "bin"
+
+
+def test_store_fetch_multi_key(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    save_h5(
+        test_dir,
+        "multi_key",
+        {
+            "sequence": [torch.randint(0, 100, (100,), dtype=torch.int64)],
+            "loss_mask": [torch.ones(100, dtype=torch.int64)],
+        },
+    )
+    store = StoreFactory.create("h5")
+    store.load(test_dir)
+    result = store.fetch(10, 20, ["sequence", "loss_mask"])
+    assert isinstance(result, dict)
+    assert result["sequence"].shape[0] == 10
+    assert result["loss_mask"].shape[0] == 10
+
+
+def test_store_fetch_out_of_bounds(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    save_h5(test_dir, "bounds", {"sequence": [torch.randint(0, 100, (50,))]})
+    store = StoreFactory.create("h5")
+    store.load(test_dir)
+    with pytest.raises(ValueError, match="out of bounds"):
+        store.fetch(-1, 10, "sequence")
+    with pytest.raises(ValueError, match="out of bounds"):
+        store.fetch(0, 51, "sequence")
+    with pytest.raises(ValueError, match="out of bounds"):
+        store.fetch(50, 50, "sequence")
+
+
+def test_dataset_load_explicit_storage_type(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    dataset = _make_seq_dataset(test_dir, "explicit", storage_type="h5")
+    assert len(dataset) > 0
+    assert dataset.count == 200
+
+
+def test_detect_format_jsonl_dir(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer_path = _save_test_tokenizer(test_dir, base_test_env["tokenizer"])
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [{"text": "hello world"}, {"text": "foo bar baz"}],
+    )
+    assert detect_format(data_dir) == "jsonl"
+
+
+def test_jsonl_store_seq(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer_path = _save_test_tokenizer(test_dir, base_test_env["tokenizer"])
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [{"text": "hello world"}, {"text": "foo bar baz qux"}],
+        config_overrides={"preprocessing": {"max_seq_len": 128, "min_chars": 0}},
+    )
+
+    store = StoreFactory.create("jsonl")
+    store.load(data_dir)
+    assert len(store) > 0
+    assert "sequence" in store.keys
+
+    dataset = DatasetFactory.load("seq", data_dir, window_size=8)
+    assert len(dataset) > 0
+    item = dataset[0]
+    assert "input_ids" in item
+    assert "target_ids" in item
+    assert item["input_ids"].dtype == torch.long
+
+
+def test_jsonl_store_sft(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer = base_test_env["tokenizer"]
+    tokenizer.set_chat_template(
+        "{% for message in messages %}{{ message['role'] }}:{{ message['content'] }}\n{% endfor %}"
+    )
+    tokenizer_path = _save_test_tokenizer(test_dir, tokenizer)
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [
+            {
+                "messages": [
+                    {"role": "system", "content": "sys"},
+                    {"role": "user", "content": "hi"},
+                    {"role": "assistant", "content": "hello"},
+                ]
+            }
+        ],
+        config_overrides={
+            "input": {
+                "sections": [{"field": "messages", "action": "$role", "template": True}]
+            },
+            "mask": {"system": "mask", "user": "mask", "assistant": "train"},
+            "mask_default": "mask",
+        },
+    )
+
+    store = StoreFactory.create("jsonl")
+    store.load(data_dir)
+    assert "sequence" in store.keys
+    assert "loss_mask" in store.keys
+    assert "position_ids" in store.keys
+
+    dataset = DatasetFactory.load("sft", data_dir, window_size=8)
+    item = dataset[0]
+    assert "input_ids" in item
+    assert "target_ids" in item
+    assert "loss_mask" in item
+    assert "position_ids" in item
+    assert item["loss_mask"].dtype == torch.bool
+
+
+def test_jsonl_store_pipeline_config_roundtrip(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    config_path = os.path.join(test_dir, "dataset_config.json")
+    with open(config_path, "w", encoding="utf-8") as f:
+        json.dump(
+            {
+                "tokenizer_path": os.path.join(test_dir, "tokenizer"),
+                "version": 1,
+                "input": {"sections": [{"field": "text", "action": "train"}]},
+                "mask": {"assistant": "train"},
+                "preprocessing": {"max_seq_len": 64},
+                "output": {"position_ids_mode": "doc_reset"},
+            },
+            f,
+            ensure_ascii=False,
+            indent=2,
+        )
+
+    with open(config_path, "r", encoding="utf-8") as f:
+        raw = json.load(f)
+    raw.pop("tokenizer_path")
+    config = PipelineConfig.from_dict(raw)
+    assert config.output.position_ids_mode == "doc_reset"
+    assert config.preprocessing.max_seq_len == 64

tests/data/test_preprocess_builder.py

@@ -0,0 +1,369 @@
+import pytest
+
+from astrai.config.preprocess_config import (
+    InputConfig,
+    OutputConfig,
+    PipelineConfig,
+    ProcessingConfig,
+)
+from astrai.preprocessing.builder import (
+    MaskBuilderFactory,
+    SectionedMaskBuilder,
+)
+from tests.data.conftest import (
+    _CHAT_SECTIONS,
+    _INSTRUCTION_SECTIONS,
+    _TEXT_SECTIONS,
+    make_chat_config,
+    make_dpo_chat_config,
+    make_grpo_config,
+    make_instruction_config,
+    make_text_config,
+)
+
+
+def test_chat_simple(chat_tokenizer, builder):
+    config = make_chat_config()
+    item = {
+        "messages": [
+            {"role": "system", "content": "You are helpful."},
+            {"role": "user", "content": "Hello."},
+            {"role": "assistant", "content": "Hi there!"},
+        ]
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result is not None
+    assert "sequence" in result
+    assert "loss_mask" in result
+    assert len(result["sequence"]) == len(result["loss_mask"])
+
+    ids = chat_tokenizer.decode(result["sequence"], skip_special_tokens=False)
+    assert "system" in ids.lower() or "<|im_start|>system" in ids
+    assert "assistant" in ids.lower() or "<|im_start|>assistant" in ids
+
+    total = len(result["sequence"])
+    trained = sum(result["loss_mask"])
+    assert trained > 0
+    assert trained < total
+
+
+def test_chat_mask_only_assistant(chat_tokenizer, builder):
+    config = make_chat_config()
+    item = {
+        "messages": [
+            {"role": "user", "content": "What is 2+2?"},
+            {"role": "assistant", "content": "4"},
+        ]
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    mask = result["loss_mask"]
+    ids = result["sequence"]
+    assert len(ids) == len(mask)
+
+    trained = [i for i, m in enumerate(mask) if m == 1]
+    masked = [i for i, m in enumerate(mask) if m == 0]
+    assert len(trained) > 0
+    assert len(masked) > 0
+
+
+@pytest.mark.parametrize(
+    "mask_rules,mask_default,expect_nonzero",
+    [
+        ({"system": "mask", "user": "mask", "assistant": "mask"}, "mask", False),
+        ({}, "train", True),
+    ],
+)
+def test_chat_uniform_masking(
+    mask_rules, mask_default, expect_nonzero, chat_tokenizer, builder
+):
+    config = PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask=mask_rules,
+        mask_default=mask_default,
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+    item = {
+        "messages": [
+            {"role": "system", "content": "You are helpful."},
+            {"role": "assistant", "content": "Hi there!"},
+        ]
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    masked_count = sum(result["loss_mask"])
+    if expect_nonzero:
+        assert masked_count > 0
+    else:
+        assert masked_count == 0
+
+
+def test_chat_empty_messages(chat_tokenizer, builder):
+    config = make_chat_config()
+    assert builder.build({"messages": []}, config, chat_tokenizer) is None
+    assert builder.build({}, config, chat_tokenizer) is None
+
+
+def test_chat_domain_extraction(chat_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask={"assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+        output=OutputConfig(domain_key="source"),
+    )
+    item = {
+        "messages": [
+            {"role": "user", "content": "Hi"},
+            {"role": "assistant", "content": "Hello"},
+        ],
+        "source": "wiki",
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result["domain"] == "wiki"
+
+
+def test_chat_truncation(chat_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask={"assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=10),
+    )
+    item = {
+        "messages": [
+            {
+                "role": "user",
+                "content": "Tell me a very long story about dragons and knights and magic.",
+            },
+            {"role": "assistant", "content": "Sure! Here is a tale..."},
+        ]
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert len(result["sequence"]) <= 10
+    assert len(result["loss_mask"]) == len(result["sequence"])
+
+
+def test_instruction_basic(test_tokenizer, builder):
+    config = make_instruction_config()
+    item = {"prompt": "Translate to French: Hello", "response": "Bonjour"}
+    result = builder.build(item, config, test_tokenizer)
+    assert result is not None
+    assert len(result["sequence"]) == len(result["loss_mask"])
+
+
+def test_instruction_prompt_masked(test_tokenizer, builder):
+    config = make_instruction_config()
+    item = {"prompt": "hello", "response": "world"}
+    result = builder.build(item, config, test_tokenizer)
+    mask = result["loss_mask"]
+    ids = result["sequence"]
+
+    prompt_ids = test_tokenizer.encode("hello", add_special_tokens=True)
+    p_len = min(len(prompt_ids), len(ids))
+    assert all(m == 0 for m in mask[:p_len])
+    if p_len < len(ids):
+        assert all(m == 1 for m in mask[p_len:])
+
+
+def test_instruction_train_on_prompt(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(
+            sections=[
+                {"field": "prompt", "action": "train", "add_special_tokens": True},
+                {"field": "response", "action": "mask"},
+            ]
+        ),
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+    item = {"prompt": "hello", "response": "world"}
+    result = builder.build(item, config, test_tokenizer)
+    mask = result["loss_mask"]
+    ids = result["sequence"]
+
+    prompt_ids = test_tokenizer.encode("hello", add_special_tokens=True)
+    p_len = min(len(prompt_ids), len(ids))
+    assert all(m == 1 for m in mask[:p_len])
+
+
+def test_text_basic(test_tokenizer, builder):
+    config = make_text_config()
+    item = {"text": "Hello world. This is a test document."}
+    result = builder.build(item, config, test_tokenizer)
+    assert result is not None
+    assert "sequence" in result
+    assert len(result["sequence"]) > 0
+    assert "loss_mask" not in result
+
+
+def test_text_empty(test_tokenizer, builder):
+    config = make_text_config()
+    assert builder.build({"text": ""}, config, test_tokenizer) is None
+    assert builder.build({"text": "   "}, config, test_tokenizer) is None
+
+
+def test_text_too_short(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(min_chars=100),
+    )
+    assert builder.build({"text": "short"}, config, test_tokenizer) is None
+
+
+def test_text_truncation(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(max_seq_len=3, min_chars=1),
+    )
+    item = {"text": "This is a very long text that should be truncated"}
+    result = builder.build(item, config, test_tokenizer)
+    assert len(result["sequence"]) <= 3
+
+
+def test_sectioned_chat(chat_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask={"system": "mask", "user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+    )
+    item = {
+        "messages": [
+            {"role": "user", "content": "What is 2+2?"},
+            {"role": "assistant", "content": "4"},
+        ]
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result is not None
+    assert len(result["sequence"]) == len(result["loss_mask"])
+    assert sum(result["loss_mask"]) > 0
+    assert 0 in result["loss_mask"]
+
+
+def test_sectioned_instruction(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_INSTRUCTION_SECTIONS),
+        preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=0),
+    )
+    item = {"prompt": "Q: Why?", "response": "A: Because."}
+    result = builder.build(item, config, test_tokenizer)
+    assert result is not None
+    mask = result["loss_mask"]
+    assert mask[0] == 0
+    assert mask[-1] == 1
+
+
+def test_sectioned_text(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=1),
+    )
+    item = {"text": "Hello world, this is a test."}
+    result = builder.build(item, config, test_tokenizer)
+    assert result is not None
+    assert "loss_mask" not in result
+
+
+def test_sectioned_text_too_short(test_tokenizer, builder):
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=100),
+    )
+    assert builder.build({"text": "short"}, config, test_tokenizer) is None
+
+
+def test_factory_registered():
+    names = MaskBuilderFactory.list_registered()
+    assert "sectioned" in names
+
+
+def test_factory_create():
+    builder_obj = MaskBuilderFactory.create("sectioned")
+    assert isinstance(builder_obj, SectionedMaskBuilder)
+
+
+def test_dpo_chat_basic(chat_tokenizer, builder):
+    config = make_dpo_chat_config()
+    item = {
+        "chosen": [
+            {"role": "user", "content": "What is 2+2?"},
+            {"role": "assistant", "content": "4"},
+        ],
+        "rejected": [
+            {"role": "user", "content": "What is 2+2?"},
+            {"role": "assistant", "content": "5"},
+        ],
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result is not None
+    assert "chosen" in result
+    assert "rejected" in result
+    assert "chosen_mask" in result
+    assert "rejected_mask" in result
+    assert len(result["chosen"]) == len(result["chosen_mask"])
+    assert len(result["rejected"]) == len(result["rejected_mask"])
+    assert sum(result["chosen_mask"]) > 0
+    assert sum(result["rejected_mask"]) > 0
+
+
+def test_dpo_chosen_only_trained(chat_tokenizer, builder):
+    config = make_dpo_chat_config()
+    item = {
+        "chosen": [
+            {"role": "user", "content": "Hi"},
+            {"role": "assistant", "content": "Hello"},
+        ],
+        "rejected": [
+            {"role": "user", "content": "Hi"},
+            {"role": "assistant", "content": "Go away"},
+        ],
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert 0 in result["chosen_mask"]
+    assert 1 in result["chosen_mask"]
+    assert 0 in result["rejected_mask"]
+    assert 1 in result["rejected_mask"]
+
+
+def test_dpo_missing_field_is_none(chat_tokenizer, builder):
+    config = make_dpo_chat_config()
+    assert builder.build({"chosen": [], "rejected": []}, config, chat_tokenizer) is None
+
+
+def test_grpo_basic(chat_tokenizer, builder):
+    config = make_grpo_config()
+    item = {
+        "prompt": [{"role": "user", "content": "What is 2+2?"}],
+        "responses": ["4", "The answer is four", "Four", "2+2=4"],
+        "rewards": [1.0, 0.5, 0.8, 0.2],
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result is not None
+    assert "prompts" in result
+    assert "responses" in result
+    assert "masks" in result
+    assert "rewards" in result
+    assert len(result["responses"]) == len(result["masks"])
+    assert result["rewards"] == [1.0, 0.5, 0.8, 0.2]
+
+
+def test_grpo_response_tokens_all_trained(chat_tokenizer, builder):
+    config = make_grpo_config()
+    item = {
+        "prompt": [{"role": "user", "content": "Q"}],
+        "responses": ["A", "B"],
+        "rewards": [0.8, 0.2],
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    masks = result["masks"]
+    assert all(m == 1 for m in masks)
+    assert len(masks) == len(result["responses"])
+
+
+def test_grpo_single_reward(chat_tokenizer, builder):
+    config = make_grpo_config()
+    item = {
+        "prompt": [{"role": "user", "content": "Q"}],
+        "responses": ["A"],
+        "rewards": 0.9,
+    }
+    result = builder.build(item, config, chat_tokenizer)
+    assert result["rewards"] == [0.9]

tests/data/test_preprocess_config.py

@@ -0,0 +1,77 @@
+import os
+
+from astrai.config.preprocess_config import (
+    InputConfig,
+    PipelineConfig,
+)
+from tests.data.conftest import (
+    _INSTRUCTION_SECTIONS,
+    _TEXT_SECTIONS,
+    make_dpo_chat_config,
+)
+
+
+def test_default_values():
+    config = PipelineConfig()
+    assert config.version == 1
+    assert config.mask == {}
+    assert config.mask_default == "mask"
+    assert config.preprocessing.max_seq_len == 2048
+    assert config.output.storage_format == "bin"
+    assert config.input.sections is None
+
+
+def test_from_dict_flat():
+    data = {
+        "version": 1,
+        "input": {
+            "sections": [{"field": "messages", "action": "$role", "template": True}]
+        },
+        "mask": {"system": "mask", "assistant": "train"},
+        "mask_default": "mask",
+        "preprocessing": {"max_seq_len": 1024},
+        "output": {"storage_format": "h5"},
+    }
+    config = PipelineConfig.from_dict(data)
+    assert config.input.sections == [
+        {"field": "messages", "action": "$role", "template": True}
+    ]
+    assert config.mask == {"system": "mask", "assistant": "train"}
+    assert config.preprocessing.max_seq_len == 1024
+    assert config.output.storage_format == "h5"
+
+
+def test_to_dict_roundtrip():
+    config = PipelineConfig(
+        input=InputConfig(sections=_INSTRUCTION_SECTIONS),
+        mask={"prompt": "mask", "response": "train"},
+        mask_default="mask",
+    )
+    d = config.to_dict()
+    config2 = PipelineConfig.from_dict(d)
+    assert config2.input.sections == _INSTRUCTION_SECTIONS
+    assert config2.mask == {"prompt": "mask", "response": "train"}
+
+
+def test_to_file_from_file(temp_dir):
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        mask={"text": "train"},
+        mask_default="mask",
+    )
+    path = os.path.join(temp_dir, "config.json")
+    config.to_file(path)
+    loaded = PipelineConfig.from_file(path)
+    assert loaded.input.sections == _TEXT_SECTIONS
+    assert loaded.mask == {"text": "train"}
+
+
+def test_dpo_config_roundtrip(temp_dir):
+    config = make_dpo_chat_config()
+    path = os.path.join(temp_dir, "config.json")
+    config.to_file(path)
+    loaded = PipelineConfig.from_file(path)
+    assert loaded.input.sources is not None
+    assert "chosen" in loaded.input.sources
+    assert "rejected" in loaded.input.sources
+    assert loaded.input.sections is None

tests/data/test_preprocess_pipeline.py

@@ -0,0 +1,264 @@
+import json
+import os
+
+from astrai.config.preprocess_config import (
+    InputConfig,
+    OutputConfig,
+    PipelineConfig,
+    ProcessingConfig,
+)
+from astrai.preprocessing.pipeline import Pipeline, filter_by_length
+from tests.data.conftest import (
+    _CHAT_SECTIONS,
+    _INSTRUCTION_SECTIONS,
+    _TEXT_SECTIONS,
+    make_dpo_chat_config,
+    make_grpo_no_template_config,
+)
+
+
+def test_filter_by_length():
+    assert filter_by_length("hello world", min_len=5)
+    assert not filter_by_length("hi", min_len=5)
+    assert not filter_by_length("x" * 100, max_len=50)
+    assert filter_by_length("just right", min_len=5, max_len=20)
+
+
+def test_full_chat_pipeline(temp_dir, chat_tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "chat.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(
+            json.dumps(
+                {
+                    "messages": [
+                        {"role": "system", "content": "You are helpful."},
+                        {"role": "user", "content": "Hi."},
+                        {"role": "assistant", "content": "Hello!"},
+                    ]
+                }
+            )
+            + "\n"
+        )
+        f.write(
+            json.dumps(
+                {
+                    "messages": [
+                        {"role": "user", "content": "What is 2+2?"},
+                        {"role": "assistant", "content": "4"},
+                    ]
+                }
+            )
+            + "\n"
+        )
+
+    config = PipelineConfig(
+        input=InputConfig(sections=_CHAT_SECTIONS),
+        mask={"system": "mask", "user": "mask", "assistant": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+        output=OutputConfig(storage_format="bin", domain_key=None),
+    )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=config,
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=chat_tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    assert os.path.exists(meta_path)
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert "sequence" in meta
+    assert "loss_mask" in meta
+    assert meta["sequence"]["dtype"] == "int32"
+    assert meta["loss_mask"]["dtype"] == "int32"
+
+
+def test_full_text_pipeline(temp_dir, tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "text.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(
+            json.dumps(
+                {
+                    "text": "Hello world this is a test document with enough characters to pass the minimum length filter."
+                }
+            )
+            + "\n"
+        )
+        f.write(
+            json.dumps(
+                {
+                    "text": "Another document for testing purposes with sufficient length to be processed."
+                }
+            )
+            + "\n"
+        )
+
+    config = PipelineConfig(
+        input=InputConfig(sections=_TEXT_SECTIONS),
+        preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=10),
+        output=OutputConfig(storage_format="bin"),
+    )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=config,
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    assert os.path.exists(meta_path)
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert "sequence" in meta
+    assert "loss_mask" not in meta
+
+
+def test_full_instruction_pipeline(temp_dir, tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "instruct.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(
+            json.dumps(
+                {
+                    "prompt": "Tell me a joke",
+                    "response": "Why did the chicken cross the road?",
+                }
+            )
+            + "\n"
+        )
+        f.write(
+            json.dumps(
+                {
+                    "prompt": "What is AI?",
+                    "response": "Artificial Intelligence is a field of computer science.",
+                }
+            )
+            + "\n"
+        )
+
+    config = PipelineConfig(
+        input=InputConfig(sections=_INSTRUCTION_SECTIONS),
+        mask={"prompt": "mask", "response": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+        output=OutputConfig(storage_format="bin"),
+    )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=config,
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    assert os.path.exists(meta_path)
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert "sequence" in meta
+    assert "loss_mask" in meta
+
+
+def test_dtype_override(temp_dir, tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "data.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(json.dumps({"prompt": "Q", "response": "A"}) + "\n")
+
+    config = PipelineConfig(
+        input=InputConfig(sections=_INSTRUCTION_SECTIONS),
+        mask={"prompt": "mask", "response": "train"},
+        mask_default="mask",
+        preprocessing=ProcessingConfig(max_seq_len=2048),
+        output=OutputConfig(storage_format="bin", dtype={"loss_mask": "bool"}),
+    )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=config,
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert meta["sequence"]["dtype"] == "int32"
+    assert meta["loss_mask"]["dtype"] == "bool"
+
+
+def test_dpo_pipeline(temp_dir, chat_tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "dpo.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(
+            json.dumps(
+                {
+                    "chosen": [
+                        {"role": "user", "content": "Hi."},
+                        {"role": "assistant", "content": "Hello!"},
+                    ],
+                    "rejected": [
+                        {"role": "user", "content": "Hi."},
+                        {"role": "assistant", "content": "Go away."},
+                    ],
+                }
+            )
+            + "\n"
+        )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=make_dpo_chat_config(),
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=chat_tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    assert os.path.exists(meta_path)
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert "chosen" in meta
+    assert "rejected" in meta
+    assert "chosen_mask" in meta
+    assert "rejected_mask" in meta
+    assert "sequence" not in meta
+
+
+def test_grpo_pipeline(temp_dir, tokenizer_dir):
+    jsonl_path = os.path.join(temp_dir, "grpo.jsonl")
+    with open(jsonl_path, "w", encoding="utf-8") as f:
+        f.write(
+            json.dumps(
+                {
+                    "prompt": "Question?",
+                    "responses": ["Answer A", "Answer B"],
+                    "rewards": [0.8, 0.3],
+                }
+            )
+            + "\n"
+        )
+
+    out_dir = os.path.join(temp_dir, "output")
+    Pipeline(
+        config=make_grpo_no_template_config(),
+        input_paths=[jsonl_path],
+        output_dir=out_dir,
+        tokenizer_path=tokenizer_dir,
+    ).run()
+
+    meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
+    assert os.path.exists(meta_path)
+    with open(meta_path, "r") as f:
+        meta = json.load(f)
+    assert "prompts" in meta
+    assert "responses" in meta
+    assert "masks" in meta
+    assert "rewards" in meta
+    assert "sequence" not in meta

tests/inference/conftest.py

@@ -5,21 +5,22 @@ from unittest.mock import MagicMock
 import pytest
 from fastapi.testclient import TestClient
 
-from astrai.inference import app
+from astrai.inference import get_app
 
 
 @pytest.fixture
 def client():
     """Provide a test client for the FastAPI app."""
-    app.state.server_config = {
+    _app = get_app()
+    _app.state.server_config = {
         "device": "cpu",
         "dtype": "bfloat16",
         "param_path": None,
         "max_batch_size": 1,
         "_test": True,
     }
-    app.state.engine = None
+    _app.state.engine = None
-    return TestClient(app)
+    return TestClient(_app)
 
 
 @pytest.fixture
@@ -49,5 +50,5 @@ def mock_engine():
 @pytest.fixture
 def loaded_model(client, mock_engine):
     """Simulate that the engine is loaded."""
-    app.state.engine = mock_engine
+    get_app().state.engine = mock_engine
     return mock_engine

tests/inference/test_cache.py

@@ -4,7 +4,7 @@ import torch
 
 from astrai.inference import (
     Allocator,
-    KVCache,
+    PageCache,
     PagePool,
     PrefixCache,
     Storage,
@@ -161,7 +161,7 @@ def test_task_table_pop():
 
 
 def test_kv_cache_task_extend_allocates():
-    cache = KVCache(
+    cache = PageCache(
         n_layers=1,
         n_pages=8,
         page_size=64,
@@ -177,7 +177,7 @@ def test_kv_cache_task_extend_allocates():
 
 
 def test_kv_cache_task_extend_fails_when_pool_full():
-    cache = KVCache(
+    cache = PageCache(
         n_layers=1,
         n_pages=2,
         page_size=64,

tests/inference/test_protocol.py

@@ -0,0 +1,286 @@
+"""Unit tests for protocol builders, StopChecker, GenContext, StopInfo."""
+
+import json
+from unittest.mock import MagicMock
+
+import pytest
+
+from astrai.inference.api.anthropic import AnthropicResponseBuilder
+from astrai.inference.api.openai import OpenAIResponseBuilder
+from astrai.inference.api.protocol import GenContext, StopChecker, StopInfo
+from astrai.inference.engine import GenerationRequest
+
+
+def _make_ctx(**kwargs):
+    defaults = {
+        "resp_id": "test-123",
+        "created": 1000,
+        "model": "test-model",
+        "prompt_tokens": 10,
+        "completion_tokens": 5,
+    }
+    defaults.update(kwargs)
+    return GenContext(**defaults)
+
+
+def _sse_payloads(events):
+    payloads = []
+    for chunk in events:
+        for line in chunk.strip().split("\n"):
+            if line.startswith("data: "):
+                try:
+                    payloads.append(json.loads(line[6:]))
+                except json.JSONDecodeError:
+                    pass
+    return payloads
+
+
+class TestStopChecker:
+    def test_check_finds_match(self):
+        sc = StopChecker(["stop", "end"])
+        assert sc.check("hello stop world") == "stop"
+
+    def test_check_returns_none_when_no_match(self):
+        sc = StopChecker(["stop"])
+        assert sc.check("hello world") is None
+
+    def test_check_empty_sequences(self):
+        sc = StopChecker([])
+        assert sc.check("hello") is None
+
+
+class TestGenContext:
+    def test_defaults(self):
+        ctx = GenContext(resp_id="a", created=1, model="m", prompt_tokens=10)
+        assert ctx.completion_tokens == 0
+
+    def test_fields_mutable(self):
+        ctx = GenContext(resp_id="a", created=1, model="m", prompt_tokens=10)
+        ctx.completion_tokens = 42
+        assert ctx.completion_tokens == 42
+
+
+class TestStopInfo:
+    def test_defaults(self):
+        s = StopInfo()
+        assert s.matched is None
+        assert s.body == ""
+        assert s.yielded == ""
+
+    def test_with_values(self):
+        s = StopInfo(matched="stop", body="hello stop", yielded="hello ")
+        assert s.matched == "stop"
+        assert s.body == "hello stop"
+        assert s.yielded == "hello "
+
+
+class TestOpenAIResponseBuilder:
+    @pytest.fixture
+    def builder(self):
+        builder = OpenAIResponseBuilder()
+        req = MagicMock()
+        req.messages = [MagicMock(role="user", content="Hello")]
+        req.stop = None
+        req.model = "astrai"
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = "Hello"
+        builder.prepare(req, engine)
+        return builder
+
+    def test_prepare_returns_prompt_ctx_stops(self, builder):
+        req = MagicMock()
+        req.messages = [MagicMock(role="user", content="Hi")]
+        req.stop = ["END"]
+        req.model = "gpt"
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = "Hi"
+        prompt, ctx, stops = builder.prepare(req, engine)
+        assert prompt == "Hi"
+        assert ctx.model == "gpt"
+        assert ctx.prompt_tokens == 0
+        assert stops == ["END"]
+
+    def test_prepare_no_stop_returns_empty_list(self, builder):
+        req = MagicMock()
+        req.messages = []
+        req.stop = None
+        req.model = "x"
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = ""
+        _, _, stops = builder.prepare(req, engine)
+        assert stops == []
+
+    def test_format_stream_start(self, builder):
+        ctx = _make_ctx()
+        events = builder.format_stream_start(ctx)
+        payloads = _sse_payloads(events)
+        assert len(payloads) == 1
+        p = payloads[0]
+        assert p["object"] == "chat.completion.chunk"
+        assert p["choices"][0]["delta"]["role"] == "assistant"
+        assert p["choices"][0]["finish_reason"] is None
+
+    def test_format_chunk(self, builder):
+        events = builder.format_chunk("hello", body="hello")
+        payload = json.loads(events[0].split("data: ", 1)[1])
+        assert payload["choices"][0]["delta"]["content"] == "hello"
+        assert payload["choices"][0]["finish_reason"] is None
+
+    def test_format_stream_end(self, builder):
+        ctx = _make_ctx(completion_tokens=5)
+        stop = StopInfo(matched="stop")
+        events = builder.format_stream_end(ctx, stop)
+        payloads = _sse_payloads(events)
+        finish = payloads[0]
+        assert finish["choices"][0]["finish_reason"] == "stop"
+        usage = payloads[1]
+        assert usage["completion_tokens"] == 5
+        assert usage["total_tokens"] == 15
+
+    def test_format_response(self, builder):
+        ctx = _make_ctx()
+        stop = StopInfo()
+        resp = builder.format_response(ctx, "hello", stop)
+        assert resp["object"] == "chat.completion"
+        assert resp["choices"][0]["message"]["content"] == "hello"
+        assert resp["usage"]["prompt_tokens"] == 10
+
+
+class TestAnthropicResponseBuilder:
+    @pytest.fixture
+    def builder(self):
+        builder = AnthropicResponseBuilder()
+        req = MagicMock()
+        req.messages = [MagicMock(role="user", content="Hello")]
+        req.model = "claude"
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = "Hello"
+        req.system = None
+        builder.prepare(req, engine)
+        return builder
+
+    def test_prepare_messages(self, builder):
+        req = MagicMock()
+        req.messages = [MagicMock(role="user", content="Hi")]
+        req.model = "claude"
+        req.system = None
+        req.stop_sequences = None
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = "Hi"
+        prompt, ctx, stops = builder.prepare(req, engine)
+        assert prompt == "Hi"
+        assert stops == []
+
+    def test_prepare_with_stop_sequences(self, builder):
+        req = MagicMock()
+        req.messages = []
+        req.model = "x"
+        req.stop_sequences = ["stop", "end"]
+        req.system = None
+        engine = MagicMock()
+        engine.tokenizer.apply_chat_template.return_value = ""
+        _, _, stops = builder.prepare(req, engine)
+        assert stops == ["stop", "end"]
+
+    def test_format_stream_start(self, builder):
+        ctx = _make_ctx(prompt_tokens=3)
+        events = builder.format_stream_start(ctx)
+        payloads = _sse_payloads(events)
+        assert len(payloads) == 2
+        assert payloads[0]["type"] == "message_start"
+        assert payloads[0]["message"]["usage"]["input_tokens"] == 3
+        assert payloads[1]["type"] == "content_block_start"
+
+    def test_format_chunk(self, builder):
+        events = builder.format_chunk("tok", body="tok")
+        payload = json.loads(events[0].split("data: ", 1)[1])
+        assert payload["type"] == "content_block_delta"
+        assert payload["delta"]["text"] == "tok"
+
+    def test_format_stream_end_no_stop(self, builder):
+        ctx = _make_ctx(completion_tokens=3)
+        stop = StopInfo()
+        events = builder.format_stream_end(ctx, stop)
+        payloads = _sse_payloads(events)
+        # content_block_stop, message_delta, message_stop
+        types = [p["type"] for p in payloads]
+        assert types == ["content_block_stop", "message_delta", "message_stop"]
+        assert payloads[1]["delta"]["stop_reason"] == "end_turn"
+
+    def test_format_stream_end_with_stop_trims_and_emits_remaining(self, builder):
+        ctx = _make_ctx(completion_tokens=7)
+        stop = StopInfo(
+            matched="END",
+            body="Hello world END extra",
+            yielded="Hello ",
+        )
+        events = builder.format_stream_end(ctx, stop)
+        payloads = _sse_payloads(events)
+        # unyielded delta, content_block_stop, message_delta, message_stop
+        types = [p["type"] for p in payloads]
+        assert types == [
+            "content_block_delta",
+            "content_block_stop",
+            "message_delta",
+            "message_stop",
+        ]
+        assert payloads[0]["delta"]["text"] == "world "
+        assert payloads[2]["delta"]["stop_reason"] == "stop_sequence"
+        assert payloads[2]["delta"]["stop_sequence"] == "END"
+
+    def test_format_stream_end_stop_trimmed_already_yielded(self, builder):
+        ctx = _make_ctx()
+        stop = StopInfo(
+            matched="END",
+            body="Hello END",
+            yielded="Hello ",
+        )
+        events = builder.format_stream_end(ctx, stop)
+        payloads = _sse_payloads(events)
+        # No unyielded delta (everything already sent)
+        types = [p["type"] for p in payloads]
+        assert types == ["content_block_stop", "message_delta", "message_stop"]
+
+    def test_format_response_with_stop_trims_content(self, builder):
+        ctx = _make_ctx()
+        stop = StopInfo(matched="STOP", body="text STOP extra", yielded="text ")
+        resp = builder.format_response(ctx, "text STOP extra", stop)
+        assert resp["content"][0]["text"] == "text "
+        assert resp["stop_reason"] == "stop_sequence"
+        assert resp["stop_sequence"] == "STOP"
+
+    def test_format_response_no_stop(self, builder):
+        ctx = _make_ctx()
+        stop = StopInfo()
+        resp = builder.format_response(ctx, "full text", stop)
+        assert resp["content"][0]["text"] == "full text"
+        assert resp["stop_reason"] == "end_turn"
+
+
+class TestGenerationRequestValidation:
+    def test_valid_params(self):
+        gr = GenerationRequest(
+            messages=[{"role": "user", "content": "hi"}],
+            top_k=50,
+            top_p=0.9,
+            temperature=0.7,
+        )
+        assert gr.top_k == 50
+
+    def test_invalid_top_p_raises(self):
+        with pytest.raises(ValueError, match="top_p"):
+            GenerationRequest(messages=[{"role": "user", "content": "hi"}], top_p=1.5)
+
+    def test_invalid_top_k_raises(self):
+        with pytest.raises(ValueError, match="top_k"):
+            GenerationRequest(messages=[{"role": "user", "content": "hi"}], top_k=-1)
+
+    def test_invalid_temperature_raises(self):
+        with pytest.raises(ValueError, match="temperature"):
+            GenerationRequest(
+                messages=[{"role": "user", "content": "hi"}], temperature=-0.1
+            )
+
+    def test_top_k_zero_valid(self):
+        gr = GenerationRequest(messages=[{"role": "user", "content": "hi"}], top_k=0)
+        assert gr.top_k == 0

tests/inference/test_scheduler.py

@@ -173,3 +173,21 @@ def test_scheduler_concurrent_get_stats(mock_model_and_tokenizer):
     for stats in results["stats"]:
         assert "total_tasks" in stats
         assert stats["total_tasks"] >= 0
+
+
+def test_prefill_skips_fully_cached_tasks(mock_model_and_tokenizer):
+    """Tasks whose entire prompt is cached skip the prefill phase."""
+    mock_model, mock_tokenizer = mock_model_and_tokenizer
+
+    with patch("astrai.inference.core.scheduler.AutoModel"):
+        with patch("astrai.inference.core.scheduler.AutoTokenizer"):
+            scheduler = InferenceScheduler(
+                model=mock_model,
+                tokenizer=mock_tokenizer,
+                max_batch_size=4,
+                device="cpu",
+            )
+
+    task_id = scheduler.add_task("short prompt", stream_callback=lambda t: None)
+    scheduler.stop()
+    assert task_id.startswith("task_")

tests/inference/test_server.py

@@ -2,12 +2,12 @@
 
 import pytest
 
-from astrai.inference import app
+from astrai.inference import get_app
 
 
 def test_health_no_model(client):
     """GET /health should return 200 even when engine not loaded."""
-    app.state.engine = None
+    get_app().state.engine = None
     response = client.get("/health")
     assert response.status_code == 200
     data = response.json()
@@ -30,7 +30,7 @@ def test_chat_completions_non_stream(client, loaded_model):
     async def async_gen():
         yield "Assistant reply"
 
-    app.state.engine = loaded_model
+    get_app().state.engine = loaded_model
     loaded_model.generate_async.return_value = async_gen()
     response = client.post(
         "/v1/chat/completions",
@@ -56,7 +56,7 @@ def test_chat_completions_stream(client, loaded_model):
         yield "cumulative1"
         yield "cumulative2"
 
-    app.state.engine = loaded_model
+    get_app().state.engine = loaded_model
     loaded_model.generate_async.return_value = async_gen()
     response = client.post(
         "/v1/chat/completions",
@@ -83,7 +83,7 @@ def test_messages_non_stream(client, loaded_model):
     async def async_gen():
         yield "Assistant reply"
 
-    app.state.engine = loaded_model
+    get_app().state.engine = loaded_model
     loaded_model.generate_async.return_value = async_gen()
     response = client.post(
         "/v1/messages",
@@ -111,7 +111,7 @@ def test_messages_stream(client, loaded_model):
         yield "cumulative1"
         yield "cumulative2"
 
-    app.state.engine = loaded_model
+    get_app().state.engine = loaded_model
     loaded_model.generate_async.return_value = async_gen()
     response = client.post(
         "/v1/messages",
@@ -141,7 +141,7 @@ def test_messages_with_system(client, loaded_model):
     async def async_gen():
         yield "Reply"
 
-    app.state.engine = loaded_model
+    get_app().state.engine = loaded_model
     loaded_model.generate_async.return_value = async_gen()
     response = client.post(
         "/v1/messages",
@@ -157,5 +157,60 @@ def test_messages_with_system(client, loaded_model):
     assert data["type"] == "message"
 
 
+def test_chat_completions_stop_sequence(client, loaded_model):
+    """POST /v1/chat/completions with stop parameter truncates at stop sequence."""
+
+    async def async_gen():
+        yield "Hello"
+        yield "X"
+        yield "world"
+
+    get_app().state.engine = loaded_model
+    loaded_model.generate_async.return_value = async_gen()
+    response = client.post(
+        "/v1/chat/completions",
+        json={
+            "messages": [{"role": "user", "content": "Hello"}],
+            "max_tokens": 100,
+            "stream": False,
+            "stop": ["X"],
+        },
+    )
+    assert response.status_code == 200
+    data = response.json()
+    content = data["choices"][0]["message"]["content"]
+    assert "X" in content
+    assert "world" not in content
+
+
+def test_chat_completions_stop_sequence_stream(client, loaded_model):
+    """POST /v1/chat/completions with stop parameter truncates SSE stream."""
+
+    async def async_gen():
+        yield "Hello"
+        yield "X"
+        yield "world"
+
+    get_app().state.engine = loaded_model
+    loaded_model.generate_async.return_value = async_gen()
+    response = client.post(
+        "/v1/chat/completions",
+        json={
+            "messages": [{"role": "user", "content": "Hello"}],
+            "max_tokens": 100,
+            "stream": True,
+            "stop": ["X"],
+        },
+        headers={"Accept": "text/event-stream"},
+    )
+    assert response.status_code == 200
+    content = response.content.decode("utf-8")
+    assert "Hello" in content
+    assert "world" not in content
+    assert any(
+        "finish_reason" in line for line in content.split("\n") if "stop" in line
+    )
+
+
 if __name__ == "__main__":
     pytest.main([__file__, "-v"])

tests/inference/test_tool_parser.py

@@ -0,0 +1,608 @@
+"""Unit tests for tool call parsers."""
+
+import pytest
+
+from astrai.inference.api.tool_parser import (
+    _TOOL_CALL_HEAD_RE,
+    BaseToolParser,
+    SimpleJsonToolParser,
+    ToolParserFactory,
+    _find_partial_tool_call,
+    _find_tool_calls,
+    _scan_json,
+)
+
+
+@pytest.mark.parametrize(
+    "text,expected_complete,check_end_eq_len",
+    [
+        ('{"key": "value"}', True, True),
+        ('{"outer": {"inner": 1}}', True, True),
+        ('{"key": "value"', False, False),
+        ('{"outer": {"inner": 1}', False, False),
+        ('{"key": "a{b}c"} extra', True, False),
+        (r'{"key": "a\"b"}', True, False),
+        ('{"a": {"b": {"c": {"d": {"e": 5}}}}}', True, True),
+        ('{"items": [{"x": 1}, {"x": 2}]}', True, True),
+        ('{"fn": "function() { return 1; }"}', True, False),
+        ('{"key": "\u5317\u4eac"}', True, False),
+    ],
+)
+def test_scan_json(text, expected_complete, check_end_eq_len):
+    end, complete = _scan_json(text, 0)
+    assert complete is expected_complete
+    if check_end_eq_len:
+        assert end == len(text)
+
+
+def test_find_single_tool_call():
+    text = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "get_weather"
+    assert '"city"' in results[0]["args"]
+    assert results[0]["complete"] is True
+
+
+def test_find_text_before_tool_call():
+    text = 'Some text {"name": "func", "arguments": {}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["start"] > 0
+
+
+def test_find_multiple_tool_calls():
+    text = '{"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 2
+    assert results[0]["name"] == "f1"
+    assert results[1]["name"] == "f2"
+
+
+def test_find_no_tool_call():
+    results = _find_tool_calls("Hello, how are you?")
+    assert len(results) == 0
+
+
+def test_find_non_tool_json_skipped():
+    results = _find_tool_calls('{"not_a_tool": true}')
+    assert len(results) == 0
+
+
+def test_find_no_arguments_field():
+    results = _find_tool_calls('{"name": "simple_func"}')
+    assert len(results) == 1
+    assert results[0]["name"] == "simple_func"
+    assert results[0]["args"] == ""
+
+
+def test_find_deeply_nested_arguments():
+    text = '{"name": "deep", "arguments": {"a": {"b": {"c": {"d": 4}}}}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "deep"
+    assert '"d": 4' in results[0]["args"]
+
+
+def test_find_arguments_with_boolean_and_null():
+    text = '{"name": "flags", "arguments": {"active": true, "count": 0, "nick": null}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "flags"
+    assert "true" in results[0]["args"]
+    assert "null" in results[0]["args"]
+
+
+def test_find_arguments_with_array():
+    text = '{"name": "add_items", "arguments": {"items": [1, 2, 3], "name": "list"}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "add_items"
+    assert "[1, 2, 3]" in results[0]["args"]
+
+
+def test_find_arguments_with_nested_array_of_objects():
+    text = '{"name": "batch", "arguments": {"rows": [{"id": 1, "val": "a"}, {"id": 2, "val": "b"}]}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert '"rows"' in results[0]["args"]
+    assert '"id": 1' in results[0]["args"]
+
+
+def test_find_arguments_as_string_not_object():
+    text = '{"name": "echo", "arguments": "just a string"}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "echo"
+    assert "just a string" in results[0]["args"]
+
+
+def test_find_arguments_with_unicode():
+    text = (
+        '{"name": "translate", "arguments": {"text": "\u4f60\u597d\uff0c\u4e16\u754c"}}'
+    )
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "translate"
+
+
+def test_find_arguments_with_escaped_quotes():
+    text = '{"name": "format", "arguments": {"template": "he said \\"hello\\""}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert 'he said \\"hello\\"' in results[0]["args"]
+
+
+def test_find_arguments_with_braces_in_string():
+    text = '{"name": "eval", "arguments": {"code": "function(x) { return x + 1; }"}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "eval"
+    assert "function(x) { return x + 1; }" in results[0]["args"]
+
+
+def test_find_many_properties():
+    args = ",".join(f'"{chr(97 + i % 26)}" : {i}' for i in range(20))
+    text = '{"name": "many", "arguments": {' + args + "}}"
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    assert results[0]["name"] == "many"
+
+
+def test_find_empty_arguments():
+    results = _find_tool_calls('{"name": "ping", "arguments": {}}')
+    assert len(results) == 1
+    assert results[0]["name"] == "ping"
+    assert results[0]["args"] == ""
+
+
+def test_find_extracts_correct_arg_start_position():
+    text = '{"name": "f", "arguments": {"x": 1}}'
+    results = _find_tool_calls(text)
+    assert len(results) == 1
+    json_str = text[results[0]["start"] : results[0]["end"]]
+    assert json_str == text
+
+
+@pytest.mark.parametrize(
+    "text,expected_name,expected_complete",
+    [
+        ('{"name": "func", "arguments": {"city"', "func", False),
+        ('{"name": "func", "arguments": {"city": "BJ"}}', "func", None),
+        ("plain text", None, None),
+        ('{"nam', None, None),
+        ('{"name": "deep", "arguments": {"a": {"b": {"c": ', "deep", None),
+        ('{"name": "batch", "arguments": {"items": [1, 2, ', "batch", None),
+    ],
+)
+def test_find_partial_tool_call(text, expected_name, expected_complete):
+    result = _find_partial_tool_call(text)
+    if expected_name is None:
+        assert result is None
+    else:
+        assert result is not None
+        assert result["name"] == expected_name
+        if expected_complete is not None:
+            assert result["complete"] is expected_complete
+
+
+def test_feed_plain_text():
+    parser = SimpleJsonToolParser()
+    deltas = parser.feed("Hello")
+    assert len(deltas) == 1
+    assert deltas[0]["content"] == "Hello"
+
+
+def test_feed_incremental_text():
+    parser = SimpleJsonToolParser()
+    assert parser.feed("He") == [{"content": "He"}]
+    assert parser.feed("Hello") == [{"content": "llo"}]
+
+
+def test_feed_tool_call_name_delta():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    deltas = parser.feed(text)
+    tc_deltas = [d for d in deltas if "tool_calls" in d]
+    assert len(tc_deltas) >= 1
+    name_delta = tc_deltas[0]["tool_calls"][0]
+    assert name_delta["function"]["name"] == "get_weather"
+    assert name_delta["type"] == "function"
+    assert "id" in name_delta
+
+
+def test_feed_tool_call_args_streaming():
+    parser = SimpleJsonToolParser()
+    d1 = parser.feed('{"name": "f", "arguments": {"x":')
+    d2 = parser.feed('{"name": "f", "arguments": {"x": "1"}}')
+    args_deltas = [
+        d
+        for batch in (d1, d2)
+        for d in batch
+        if "tool_calls" in d
+        and "function" in d["tool_calls"][0]
+        and "arguments" in d["tool_calls"][0]["function"]
+    ]
+    assert len(args_deltas) >= 1
+
+
+def test_feed_text_before_tool_call():
+    parser = SimpleJsonToolParser()
+    text = 'Let me check. {"name": "func", "arguments": {"a": 1}}'
+    deltas = parser.feed(text)
+    content_deltas = [d for d in deltas if "content" in d]
+    assert any("Let me check" in d.get("content", "") for d in content_deltas)
+
+
+def test_has_tool_calls_false_by_default():
+    assert SimpleJsonToolParser().has_tool_calls is False
+
+
+def test_has_tool_calls_true_after_detection():
+    parser = SimpleJsonToolParser()
+    parser.feed('{"name": "f", "arguments": {}}')
+    assert parser.has_tool_calls is True
+
+
+def test_feed_no_content_when_no_new_text():
+    parser = SimpleJsonToolParser()
+    parser.feed("Hello")
+    assert parser.feed("Hello") == []
+
+
+def test_feed_multiple_tool_calls():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
+    deltas = parser.feed(text)
+    tc_deltas = [d for d in deltas if "tool_calls" in d]
+    names = set()
+    for batch in tc_deltas:
+        for tc in batch["tool_calls"]:
+            if "function" in tc and "name" in tc["function"]:
+                names.add(tc["function"]["name"])
+    assert "f1" in names
+    assert "f2" in names
+
+
+def test_feed_with_tools_constructor():
+    tools = [{"type": "function", "function": {"name": "get_weather"}}]
+    parser = SimpleJsonToolParser(tools=tools, tool_choice="auto")
+    deltas = parser.feed('{"name": "get_weather", "arguments": {"city": "BJ"}}')
+    assert len(deltas) > 0
+
+
+def test_feed_content_after_tool_call_is_not_emitted():
+    parser = SimpleJsonToolParser()
+    parser.feed('{"name": "f", "arguments": {}} trailing text')
+    assert parser.has_tool_calls
+
+
+def _simulate_streaming(parser, text):
+    all_delta_names = []
+    all_args_chunks = []
+    for i in range(1, len(text) + 1):
+        deltas = parser.feed(text[:i])
+        for d in deltas:
+            if "tool_calls" in d:
+                for tc in d["tool_calls"]:
+                    fn = tc.get("function", {})
+                    if "name" in fn:
+                        all_delta_names.append(fn["name"])
+                    if "arguments" in fn and fn["arguments"]:
+                        all_args_chunks.append(fn["arguments"])
+    return all_delta_names, all_args_chunks
+
+
+def test_streaming_token_by_token_full_build():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    names, args_chunks = _simulate_streaming(parser, text)
+    assert "get_weather" in names
+    joined_args = "".join(args_chunks)
+    assert '"city"' in joined_args
+    assert "Beijing" in joined_args
+
+
+def test_streaming_token_by_token_text_then_tool():
+    parser = SimpleJsonToolParser()
+    parts = [
+        "I'll ",
+        "check ",
+        "that. ",
+        '{"',
+        'name": "search", ',
+        '"arguments": {"q": "hello"}}',
+    ]
+    body = ""
+    content_chunks = []
+    tool_names = []
+    for part in parts:
+        body += part
+        deltas = parser.feed(body)
+        for d in deltas:
+            if "content" in d:
+                content_chunks.append(d["content"])
+            if "tool_calls" in d:
+                for tc in d["tool_calls"]:
+                    fn = tc.get("function", {})
+                    if "name" in fn:
+                        tool_names.append(fn["name"])
+    full_content = "".join(content_chunks)
+    assert "I'll check that." in full_content
+    assert "search" in tool_names
+
+
+def test_streaming_multiple_tool_calls_incremental():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
+    names, _ = _simulate_streaming(parser, text)
+    assert names[0] == "f1"
+    assert "f2" in names
+
+
+def test_streaming_deeply_nested_args():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "deep", "arguments": {"a": {"b": {"c": 42}}}}'
+    _, args_chunks = _simulate_streaming(parser, text)
+    joined = "".join(args_chunks)
+    assert '"c": 42' in joined
+
+
+def test_streaming_args_with_unicode():
+    parser = SimpleJsonToolParser()
+    text = (
+        '{"name": "translate", "arguments": {"text": "\u4f60\u597d\uff0c\u4e16\u754c"}}'
+    )
+    _, args_chunks = _simulate_streaming(parser, text)
+    joined = "".join(args_chunks)
+    assert "\u4f60\u597d" in joined
+
+
+def test_streaming_args_with_array():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "add", "arguments": {"items": [1, 2, 3]}}'
+    _, args_chunks = _simulate_streaming(parser, text)
+    joined = "".join(args_chunks)
+    assert "[1, 2, 3]" in joined
+
+
+def test_streaming_empty_arguments():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "ping", "arguments": {}}'
+    deltas = parser.feed(text)
+    tc_deltas = [d for d in deltas if "tool_calls" in d]
+    assert len(tc_deltas) >= 1
+    name_delta = tc_deltas[0]["tool_calls"][0]
+    assert name_delta["function"]["name"] == "ping"
+    assert "arguments" in name_delta["function"]
+
+
+def test_streaming_args_diff_only_emits_new_bytes():
+    parser = SimpleJsonToolParser()
+    step1 = parser.feed('{"name": "f", "arguments": {"city": "Bei')
+    step2 = parser.feed('{"name": "f", "arguments": {"city": "Beijing"}}')
+    all_args = []
+    for step in (step1, step2):
+        for d in step:
+            if "tool_calls" in d:
+                for tc in d["tool_calls"]:
+                    fn = tc.get("function", {})
+                    if "arguments" in fn and fn["arguments"]:
+                        all_args.append(fn["arguments"])
+    joined = "".join(all_args)
+    assert "city" in joined
+    assert "Beijing" in joined
+    assert joined.startswith('"city":')
+    assert all_args[0] != all_args[1]
+
+
+def test_streaming_distinct_tool_call_ids():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
+    all_ids = []
+    for i in range(1, len(text) + 1):
+        deltas = parser.feed(text[:i])
+        for d in deltas:
+            if "tool_calls" in d:
+                for tc in d["tool_calls"]:
+                    if "id" in tc:
+                        all_ids.append(tc["id"])
+    unique = list(dict.fromkeys(all_ids))
+    assert len(unique) == 2
+
+
+def test_parse_complete_basic():
+    parser = SimpleJsonToolParser()
+    body = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    result = parser.parse_complete(body)
+    assert result is not None
+    assert result["tool_calls"][0]["function"]["name"] == "get_weather"
+    assert "Beijing" in result["tool_calls"][0]["function"]["arguments"]
+
+
+def test_parse_complete_no_tool_call():
+    assert SimpleJsonToolParser().parse_complete("Hello world") is None
+
+
+def test_parse_complete_with_content():
+    parser = SimpleJsonToolParser()
+    result = parser.parse_complete('Prefix text. {"name": "f", "arguments": {}}')
+    assert result is not None
+    assert result["content"] == "Prefix text."
+
+
+def test_parse_complete_multiple_tool_calls():
+    parser = SimpleJsonToolParser()
+    body = '{"name": "get_weather", "arguments": {"city": "Beijing"}}{"name": "get_time", "arguments": {"tz": "Asia/Shanghai"}}'
+    result = parser.parse_complete(body)
+    assert result is not None
+    assert len(result["tool_calls"]) == 2
+    assert result["tool_calls"][0]["function"]["name"] == "get_weather"
+    assert result["tool_calls"][1]["function"]["name"] == "get_time"
+
+
+def test_parse_complete_complex_real_world():
+    parser = SimpleJsonToolParser()
+    body = (
+        '{"name": "send_email", "arguments": {'
+        '"to": ["a@b.com", "c@d.com"], "cc": null, '
+        '"subject": "Hello World", "body": "This is a test email.", '
+        '"priority": 1, "attachments": false}}'
+    )
+    result = parser.parse_complete(body)
+    assert result is not None
+    tc = result["tool_calls"][0]
+    assert tc["function"]["name"] == "send_email"
+    args = tc["function"]["arguments"]
+    assert '"to"' in args
+    assert "a@b.com" in args
+    assert "null" in args
+    assert "false" in args
+
+
+def test_parse_complete_content_with_multiple_tool_calls():
+    parser = SimpleJsonToolParser()
+    body = 'I will do two things. {"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
+    result = parser.parse_complete(body)
+    assert result is not None
+    assert result["content"] == "I will do two things."
+    assert len(result["tool_calls"]) == 2
+
+
+def test_parse_complete_no_arguments_field():
+    parser = SimpleJsonToolParser()
+    result = parser.parse_complete('{"name": "ping"}')
+    assert result is not None
+    assert result["tool_calls"][0]["function"]["name"] == "ping"
+    assert result["tool_calls"][0]["function"]["arguments"] == ""
+
+
+def test_parse_complete_content_is_none_when_pure_tool_call():
+    parser = SimpleJsonToolParser()
+    result = parser.parse_complete('{"name": "f", "arguments": {"x": 1}}')
+    assert result is not None
+    assert result["content"] is None
+
+
+def test_parse_complete_tool_calls_have_ids():
+    parser = SimpleJsonToolParser()
+    result = parser.parse_complete(
+        '{"name": "f1", "arguments": {}}{"name": "f2", "arguments": {}}'
+    )
+    assert result is not None
+    ids = [tc["id"] for tc in result["tool_calls"]]
+    assert len(ids) == 2
+    assert all(isinstance(i, str) and i.startswith("call_") for i in ids)
+    assert ids[0] != ids[1]
+
+
+def test_feed_then_parse_complete_same_instance():
+    parser = SimpleJsonToolParser()
+    parser.feed('{"name": "get_weather", "arguments": {"city": "Beijing"}}')
+    result = parser.parse_complete(
+        '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    )
+    assert result is not None
+    assert result["tool_calls"][0]["function"]["name"] == "get_weather"
+    assert parser.has_tool_calls
+
+
+@pytest.mark.parametrize(
+    "text,matches",
+    [
+        ('{"name": "f"}', True),
+        ('{ "name" : "f"}', True),
+        ('{"other": 1}', False),
+        ('prefix {"name": "f", "args": {}}', True),
+        ('{"name": "f"}', True),  # match at start
+        ('   {"name": "f"}', True),
+    ],
+)
+def test_pattern_regex(text, matches):
+    result = _TOOL_CALL_HEAD_RE.search(text)
+    if matches:
+        assert result is not None
+    else:
+        assert result is None
+
+
+def test_pattern_name_at_start():
+    assert _TOOL_CALL_HEAD_RE.match('{"name": "f"}')
+
+
+def test_factory_register_and_create():
+    parser = ToolParserFactory.create("simple_json")
+    assert isinstance(parser, BaseToolParser)
+    assert isinstance(parser, SimpleJsonToolParser)
+
+
+def test_factory_create_passes_tools():
+    parser = ToolParserFactory.create(
+        "simple_json", tools=[{"type": "function"}], tool_choice="required"
+    )
+    assert parser.tool_choice == "required"
+
+
+def test_factory_list_registered():
+    assert "simple_json" in ToolParserFactory.list_registered()
+
+
+def test_factory_create_with_no_extra_kwargs():
+    assert isinstance(ToolParserFactory.create("simple_json"), BaseToolParser)
+
+
+def test_factory_create_with_tools_only():
+    tools = [
+        {
+            "type": "function",
+            "function": {"name": "test", "parameters": {"type": "object"}},
+        }
+    ]
+    parser = ToolParserFactory.create("simple_json", tools=tools)
+    assert parser.tools == tools
+    assert parser.tool_choice == "auto"
+
+
+def test_feed_accepts_token_ids_and_ignores_them():
+    parser = SimpleJsonToolParser()
+    text = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    deltas_with = parser.feed(text, current_token_ids=[123, 456], delta_token_ids=[456])
+    assert len(deltas_with) > 0
+
+
+def test_feed_token_ids_do_not_affect_parsing():
+    parser_no_ids = SimpleJsonToolParser()
+    parser_with_ids = SimpleJsonToolParser()
+    text = '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
+    result_no = parser_no_ids.feed(text)
+    result_with = parser_with_ids.feed(
+        text, current_token_ids=[1, 2, 3], delta_token_ids=[3]
+    )
+    assert len(result_no) == len(result_with)
+    assert (
+        result_no[0]["tool_calls"][0]["function"]["name"]
+        == result_with[0]["tool_calls"][0]["function"]["name"]
+    )
+
+
+def test_parser_uses_token_ids_for_detection():
+    class TokenIdParser(BaseToolParser):
+        def __init__(self, tools=None, tool_choice="auto"):
+            super().__init__(tools, tool_choice)
+            self._detections = 0
+
+        def feed(self, body, current_token_ids=None, delta_token_ids=None):
+            if current_token_ids and 999 in current_token_ids:
+                self._detections += 1
+            return []
+
+        def parse_complete(self, body):
+            return None
+
+        @property
+        def has_tool_calls(self):
+            return self._detections > 0
+
+    parser = TokenIdParser()
+    parser.feed("hello", current_token_ids=[1, 999, 3])
+    assert parser.has_tool_calls

tests/module/test_encoder.py

@@ -1,6 +1,13 @@
+import json
+import os
+import tempfile
+
+import pytest
+import safetensors.torch as st
 import torch
 
 from astrai.config.model_config import EncoderConfig
+from astrai.model.automodel import AutoModel
 from astrai.model.encoder import EmbeddingEncoder
 
 TINY_CONFIG = dict(
@@ -14,92 +21,56 @@ TINY_CONFIG = dict(
     norm_eps=1e-5,
 )
 
+_device = "cuda" if torch.cuda.is_available() else "cpu"
 
-def test_encoder_forward_mean():
+
-    config = EncoderConfig(**TINY_CONFIG)
+def _make_model(**kwargs):
-    device = "cuda" if torch.cuda.is_available() else "cpu"
+    config = EncoderConfig(**{**TINY_CONFIG, **kwargs})
-    model = EmbeddingEncoder(config).to(device=device)
+    return EmbeddingEncoder(config).to(device=_device)
+
+
+@pytest.mark.parametrize("pooling_type", ["mean", "cls", "last"])
+def test_encoder_forward_pooling(pooling_type):
+    model = _make_model(pooling_type=pooling_type)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
 
     with torch.no_grad():
         output = model(input_ids)
 
-    assert output.shape == (batch_size, config.dim)
+    assert output.shape == (batch_size, TINY_CONFIG["dim"])
-    assert not torch.isnan(output).any()
-
-
-def test_encoder_forward_cls():
-    config = EncoderConfig(**{**TINY_CONFIG, "pooling_type": "cls"})
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-    model.eval()
-
-    batch_size, seq_len = 2, 8
-    input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
-    )
-
-    with torch.no_grad():
-        output = model(input_ids)
-
-    assert output.shape == (batch_size, config.dim)
-    assert not torch.isnan(output).any()
-
-
-def test_encoder_forward_last():
-    config = EncoderConfig(**{**TINY_CONFIG, "pooling_type": "last"})
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-    model.eval()
-
-    batch_size, seq_len = 2, 8
-    input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
-    )
-
-    with torch.no_grad():
-        output = model(input_ids)
-
-    assert output.shape == (batch_size, config.dim)
     assert not torch.isnan(output).any()
 
 
 def test_encoder_forward_with_padding():
-    config = EncoderConfig(**TINY_CONFIG)
+    model = _make_model()
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
-    input_mask = torch.ones(batch_size, seq_len, dtype=torch.bool, device=device)
+    input_mask = torch.ones(batch_size, seq_len, dtype=torch.bool, device=_device)
     input_mask[:, 4:] = False
 
     with torch.no_grad():
         output = model(input_ids, input_mask=input_mask)
 
-    assert output.shape == (batch_size, config.dim)
+    assert output.shape == (batch_size, TINY_CONFIG["dim"])
     assert not torch.isnan(output).any()
 
 
 def test_encoder_normalize():
-    config = EncoderConfig(
+    model = _make_model(pooling_type="mean", normalize_embeddings=True)
-        **{**TINY_CONFIG, "pooling_type": "mean", "normalize_embeddings": True}
-    )
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
 
     with torch.no_grad():
@@ -110,24 +81,19 @@ def test_encoder_normalize():
 
 
 def test_encoder_register():
-    from astrai.model.automodel import AutoModel
-
     assert AutoModel.is_registered("embedding")
     cls = AutoModel.get_component_class("embedding")
     assert cls is EmbeddingEncoder
 
 
 def test_encoder_from_transformer_checkpoint():
-    config = EncoderConfig(**TINY_CONFIG)
+    model = _make_model()
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-
     state_dict = model.state_dict()
     state_dict["lm_head.weight"] = torch.randn(
-        config.vocab_size, config.dim, device=device
+        TINY_CONFIG["vocab_size"], TINY_CONFIG["dim"], device=_device
     )
 
-    new_model = EmbeddingEncoder(config).to(device=device)
+    new_model = _make_model()
     new_model.load_state_dict(state_dict, strict=True)
 
     for key in model.state_dict():
@@ -135,12 +101,6 @@ def test_encoder_from_transformer_checkpoint():
 
 
 def test_encoder_save_load():
-    import json
-    import os
-    import tempfile
-
-    import safetensors.torch as st
-
     test_dir = tempfile.mkdtemp(prefix="encoder_test_")
     config_path = os.path.join(test_dir, "config.json")
     weights_path = os.path.join(test_dir, "model.safetensors")

tests/module/test_lora.py

@@ -0,0 +1,355 @@
+import tempfile
+
+import pytest
+import torch
+
+from astrai.config.model_config import AutoRegressiveLMConfig
+from astrai.model import AutoRegressiveLM
+from astrai.model.components.linear import Linear
+from astrai.model.components.lora import (
+    LoRAConfig,
+    LoRALinear,
+    _collect_lora_info,
+    _get_lora_count,
+    inject_lora,
+    load_lora,
+    merge_lora,
+    save_lora,
+)
+
+MODEL_KWARGS = dict(
+    vocab_size=1000,
+    dim=64,
+    n_heads=4,
+    n_kv_heads=2,
+    dim_ffn=128,
+    n_layers=2,
+    max_len=32,
+    norm_eps=1e-5,
+)
+
+
+def _make_model(**kwargs):
+    kw = {**MODEL_KWARGS, **kwargs}
+    config = AutoRegressiveLMConfig(**kw)
+    model = AutoRegressiveLM(config)
+    model.eval()
+    return model
+
+
+def test_loralinear_init():
+    base = Linear(64, 128)
+    lora = LoRALinear(base, r=8, alpha=16)
+
+    assert lora.weight is base.weight
+    assert not lora.weight.requires_grad
+    assert lora.lora_A.shape == (8, 64)
+    assert lora.lora_B.shape == (128, 8)
+    assert lora.scaling == 2.0
+    assert not lora._merged
+    assert lora.lora_A.requires_grad
+    assert lora.lora_B.requires_grad
+
+
+def test_loralinear_forward_init_zero_delta():
+    base = Linear(4, 4)
+    with torch.no_grad():
+        base.weight.zero_()
+
+    x = torch.randn(2, 4)
+    lora = LoRALinear(base, r=2, alpha=2)
+    base_out = base(x)
+    lora_out = lora(x)
+
+    assert torch.allclose(base_out, lora_out)
+
+
+def test_loralinear_forward_with_delta():
+    base = Linear(4, 4)
+    with torch.no_grad():
+        base.weight.zero_()
+
+    x = torch.randn(2, 4)
+    lora = LoRALinear(base, r=2, alpha=2)
+    base_out = base(x)
+
+    with torch.no_grad():
+        lora.lora_B.fill_(1.0)
+
+    lora_out = lora(x)
+    assert not torch.allclose(base_out, lora_out)
+
+
+def test_loralinear_merge():
+    base = Linear(4, 4)
+    with torch.no_grad():
+        base.weight.zero_()
+
+    x = torch.randn(2, 4)
+    lora = LoRALinear(base, r=2, alpha=2)
+    with torch.no_grad():
+        lora.lora_B.fill_(1.0)
+
+    out_before = lora(x).clone()
+    lora.merge()
+    out_after = lora(x)
+
+    torch.testing.assert_close(out_before, out_after)
+    assert lora._merged
+    assert not hasattr(lora, "lora_A")
+
+
+def test_loralinear_merge_is_idempotent():
+    base = Linear(4, 4)
+    with torch.no_grad():
+        base.weight.zero_()
+
+    lora = LoRALinear(base, r=2, alpha=2)
+    with torch.no_grad():
+        lora.lora_B.fill_(1.0)
+
+    lora.merge()
+    lora.merge()
+
+
+def test_inject_lora_default_target():
+    model = _make_model()
+    n_before = sum(1 for m in model.modules() if isinstance(m, Linear))
+
+    inject_lora(model, r=4, alpha=8)
+
+    lora_count = _get_lora_count(model)
+    assert lora_count > 0
+    assert lora_count < n_before
+
+
+def test_inject_lora_ffn():
+    model = _make_model()
+    from astrai.model.components.lora import TARGET_MODULES_FFN
+
+    inject_lora(model, r=4, alpha=8, target_modules=TARGET_MODULES_FFN)
+    assert _get_lora_count(model) > 0
+
+
+def test_inject_lora_returns_config():
+    model = _make_model()
+    cfg = inject_lora(model, r=8, alpha=32)
+    assert isinstance(cfg, LoRAConfig)
+    assert cfg.r == 8
+    assert cfg.alpha == 32
+
+
+def test_inject_lora_no_matching_targets_warns(caplog):
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"nonexistent"})
+    assert "No LoRA layers injected" in caplog.text
+
+
+def test_inject_lora_preserves_base_output():
+    model = _make_model()
+    x = torch.randint(0, 1000, (2, 16))
+
+    with torch.no_grad():
+        out_before = model(x)["logits"].clone()
+
+    inject_lora(model, r=4, alpha=8)
+
+    with torch.no_grad():
+        out_after = model(x)["logits"]
+
+    torch.testing.assert_close(out_before, out_after)
+
+
+def test_inject_lora_does_not_reinject():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+    first_count = _get_lora_count(model)
+
+    inject_lora(model, r=2, alpha=4, target_modules={"q_proj"})
+    assert _get_lora_count(model) == first_count
+
+
+def test_inject_lora_adds_new_modules():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+    first = _get_lora_count(model)
+
+    inject_lora(model, r=4, alpha=8, target_modules={"v_proj"})
+    assert _get_lora_count(model) > first
+
+
+def test_inject_lora_on_mla_model():
+    model = _make_model(
+        attn_type="mla", kv_lora_rank=16, qk_nope_head_dim=16, qk_rope_head_dim=16
+    )
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj", "o_proj"})
+    assert _get_lora_count(model) > 0
+
+
+def test_inject_lora_on_moe_model():
+    model = _make_model(
+        ffn_type="moe",
+        n_routed_experts=4,
+        n_shared_experts=1,
+        n_activated_experts=2,
+        dim_ffn=32,
+    )
+    inject_lora(model, r=4, alpha=8, target_modules={"up", "gate", "down"})
+    assert _get_lora_count(model) > 0
+
+
+def test_state_dict_key_format():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+
+    sd = model.state_dict()
+    assert "layers.0.attention.q_proj.weight" in sd
+    assert "layers.0.attention.q_proj.lora_A" in sd
+    assert "layers.0.attention.q_proj.lora_B" in sd
+
+
+def test_only_lora_params_trainable():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj", "v_proj"})
+
+    for name, param in model.named_parameters():
+        if isinstance(name.split(".")[-1], str) and "lora" in name:
+            assert param.requires_grad, f"lora param should be trainable: {name}"
+        elif any(name.endswith(f".{t}.weight") for t in ("q_proj", "v_proj")):
+            assert not param.requires_grad, f"injected weight should be frozen: {name}"
+
+
+def test_state_dict_after_inject_consistent_with_original():
+    model = _make_model()
+    sd_before = {k: v for k, v in model.state_dict().items()}
+
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+    sd_after = model.state_dict()
+
+    # original keys unchanged
+    for k in sd_before:
+        assert k in sd_after
+        assert sd_before[k].shape == sd_after[k].shape
+
+    # new lora keys present
+    lora_keys = [k for k in sd_after if "lora" in k]
+    assert len(lora_keys) > 0
+
+
+def test_save_load_roundtrip():
+    model = _make_model()
+    cfg = inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+
+    with torch.no_grad():
+        for m in model.modules():
+            if isinstance(m, LoRALinear):
+                m.lora_B.fill_(0.5)
+
+    x = torch.randint(0, 1000, (2, 16))
+    with torch.no_grad():
+        out_src = model(x)["logits"].clone()
+
+    tmpdir = tempfile.mkdtemp()
+    save_lora(model, tmpdir, cfg)
+
+    model2 = _make_model()
+    model2.load_state_dict(model.state_dict(), strict=False)
+    load_lora(model2, tmpdir)
+
+    with torch.no_grad():
+        out_dst = model2(x)["logits"]
+
+    torch.testing.assert_close(out_src, out_dst)
+
+
+def test_save_after_merge_raises():
+    model = _make_model()
+    cfg = inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+
+    with torch.no_grad():
+        for m in model.modules():
+            if isinstance(m, LoRALinear):
+                m.lora_B.fill_(0.5)
+
+    tmpdir = tempfile.mkdtemp()
+    save_lora(model, tmpdir, cfg)
+    merge_lora(model)
+
+    tmpdir2 = tempfile.mkdtemp()
+    with pytest.raises(RuntimeError, match="No LoRA parameters"):
+        save_lora(model, tmpdir2, cfg)
+
+
+def test_load_lora_on_already_injected():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+
+    with torch.no_grad():
+        for m in model.modules():
+            if isinstance(m, LoRALinear):
+                m.lora_B.fill_(0.5)
+
+    tmpdir = tempfile.mkdtemp()
+    save_lora(model, tmpdir, LoRAConfig(r=4, alpha=8, target_modules=("q_proj",)))
+
+    model2 = _make_model()
+    model2.load_state_dict(model.state_dict(), strict=False)
+    inject_lora(model2, r=4, alpha=8, target_modules={"q_proj"})
+
+    # load onto already-injected model
+    load_lora(model2, tmpdir)
+    assert _get_lora_count(model2) > 0
+
+
+def test_load_lora_mismatched_r_raises():
+    model = _make_model()
+    cfg = inject_lora(model, r=8, alpha=16, target_modules={"q_proj"})
+
+    with torch.no_grad():
+        for m in model.modules():
+            if isinstance(m, LoRALinear):
+                m.lora_B.fill_(0.5)
+
+    tmpdir = tempfile.mkdtemp()
+    save_lora(model, tmpdir, cfg)
+
+    model2 = _make_model()
+    model2.load_state_dict(model.state_dict(), strict=False)
+    inject_lora(model2, r=4, alpha=8, target_modules={"q_proj"})
+
+    with pytest.raises(RuntimeError, match="size mismatch"):
+        load_lora(model2, tmpdir)  # strict=False, only lora keys
+
+
+def test_merge_preserves_output():
+    model = _make_model()
+    inject_lora(model, r=4, alpha=8, target_modules={"q_proj"})
+
+    with torch.no_grad():
+        for m in model.modules():
+            if isinstance(m, LoRALinear):
+                m.lora_B.fill_(0.5)
+
+    x = torch.randint(0, 1000, (2, 16))
+    with torch.no_grad():
+        out_before = model(x)["logits"].clone()
+
+    merge_lora(model)
+
+    with torch.no_grad():
+        out_after = model(x)["logits"]
+    torch.testing.assert_close(out_before, out_after)
+
+
+def test_merge_no_lora_warns(caplog):
+    model = _make_model()
+    merge_lora(model)
+    assert "No LoRA layers to merge" in caplog.text
+
+
+def test_collect_lora_info():
+    model = _make_model()
+    info = _collect_lora_info(model)
+    assert "q_proj" in info
+    assert "o_proj" in info
+    assert "q_proj" in info  # each layer has one