release : v1.3.8

- refactor: 重写 IFD 评估为三层架构，引入 BFD 装箱与自定义 attention mask 批处理打分
- refactor: 重写 HumanEval 评估为函数式流水线，修复测试超时与动态 pass@k
- perf: 替换 paged KV cache 为 ContiguousCache，解码所有 group
- feat: 新增 ROUGE 评估脚本、JSONL 数据集 store、stream_chat 参数
- fix: 修复 IFD token-set 不对称、SFT position_ids 默认值、文档边界保留

.github/workflows/update-badges.yml

@@ -1,44 +0,0 @@
-name: Update Badges
-
-on:
-  push:
-    branches: [main]
-  schedule:
-    - cron: "0 0 * * *"
-  workflow_dispatch:
-
-permissions:
-  contents: write
-
-jobs:
-  update:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Fetch repo stats
-        id: api
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          mkdir -p badges
-
-          REPO=$(gh repo view --json stargazerCount,forkCount,latestRelease --jq '.')
-
-          STARS=$(echo "$REPO" | jq -r '.stargazerCount')
-          FORKS=$(echo "$REPO" | jq -r '.forkCount')
-          RELEASE=$(echo "$REPO" | jq -r '.latestRelease.tagName // "N/A"')
-
-          echo '{"schemaVersion":1,"label":"release","message":"'"$RELEASE"'","color":"76bad9"}' > badges/release.json
-          echo '{"schemaVersion":1,"label":"stars","message":"'"$STARS"'","color":"76bad9"}' > badges/stars.json
-          echo '{"schemaVersion":1,"label":"forks","message":"'"$FORKS"'","color":"76bad9"}' > badges/forks.json
-
-      - name: Deploy to gh-pages
-        uses: peaceiris/actions-gh-pages@v4
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: badges
-          destination_dir: badges
-          commit_message: "Sync badges"
-          user_name: "github-actions[bot]"
-          user_email: "github-actions[bot]@users.noreply.github.com"

.gitignore

@@ -5,8 +5,10 @@
 !*/
 
 # Allow specific file types and root files
-!*.py
+!astrai/**/*.py
-!*.sh
+!scripts/**/*.py
+!scripts/**/*.sh
+!tests/**/*.py
 
 # Allow GitHub files
 !/.github/**

CONTRIBUTING.md

@@ -5,7 +5,7 @@ Thank you for your interest in contributing! This document provides step-by-step
 ## Quick Start
 
 ```bash
-git clone https://github.com/your-username/AstrAI.git
+git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e ".[dev]"     # install with dev dependencies (pytest, ruff)
 ```

Dockerfile

@@ -23,7 +23,7 @@ COPY astrai/ ./astrai/
 COPY pyproject.toml .
 RUN pip install --no-cache-dir --upgrade pip \
     && pip install --no-cache-dir . \
-    --extra-index-url https://download.pytorch.org/whl/cu126
+    --extra-index-url https://download.pytorch.org/whl/cu128
 
 # Production stage
 FROM ubuntu:24.04 AS production

README.md

@@ -9,9 +9,9 @@
 <div align="center">
   <img src="https://img.shields.io/badge/python-3.12+-blue.svg" alt="python">
   <img src="https://img.shields.io/badge/license-GPL--3.0-blue.svg" alt="license">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/release.json" alt="release">
+  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?label=Release&color=76bad9" alt="release">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/stars.json" alt="stars">
+  <img src="https://img.shields.io/github/stars/ViperEkura/AstrAI?style=flat&label=Stars&color=76bad9" alt="stars">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/forks.json" alt="forks">
+  <img src="https://img.shields.io/github/forks/ViperEkura/AstrAI?style=flat&label=Forks&color=76bad9" alt="forks">
 </div>
 <br>
 
@@ -28,7 +28,8 @@
 ## 📖 Table of Contents
 
 - [Features](#features)
-- [Quick Start](#quick-start)
+- [Getting Started](#getting-started)
+- [Demo](#demo)
 - [Documentation](#documentation)
 - [Contributing](#contributing)
 - [Community](#community)
@@ -49,33 +50,43 @@
 - 🤗 **HuggingFace-Style API**: AutoModel/AutoTokenizer APIs inspired by HuggingFace for easy model and tokenizer loading.
 - 🔌 **Dual API Compatibility**: Supports both OpenAI and Anthropic chat completion APIs out of the box.
 
-### Quick Start
+### Getting Started
 
-#### Installation
+End-to-end walkthrough in 5 steps:
+
+**1. Install**
 
 ```bash
 git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e .
+# pip install -e ".[dev]"    # optional: dev dependencies (pytest, ruff)
 ```
 
-For development dependencies:
+**2. Download model**
 
 ```bash
-pip install -e ".[dev]"
+python scripts/demo/download.py    # downloads 1B checkpoint to params/
 ```
 
-#### Download Pre-trained Model
+**3. Preprocess data**
 
-Download pre-trained model weights (1B bilingual checkpoint) to `params/`:
+Create `pretrain.json` (preprocessing config for `seq` strategy):
+
+```json
+{
+    "version": 1,
+    "input": {"sections": [{"field": "text", "action": "train"}]},
+    "preprocessing": {"max_seq_len": 2048},
+    "output": {"storage_format": "bin"}
+}
+```
 
 ```bash
-python scripts/demo/download.py
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c pretrain.json
 ```
 
-Or download manually from [HuggingFace](https://huggingface.co/ViperEk/KHAOSZ) into `params/`.
+**4. Train**
-
-#### Train a Model
 
 ```bash
 export CUDA_VISIBLE_DEVICES=0,1,2,3
@@ -102,15 +113,54 @@ nohup python scripts/tools/train.py \
     > out.log 2> err.log &
 ```
 
-Full reference at [Parameter Guide](assets/docs/params.md).
+**5. Serve & query**
 
-#### Generate Text
+```bash
+# Terminal 1: start server
+python scripts/tools/server.py --param_path ./params --device cuda
+
+# Terminal 2: query
+curl http://localhost:8000/v1/chat/completions \
+  -H "Content-Type: application/json" \
+  -d '{"messages":[{"role":"user","content":"Hello"}],"max_tokens":512}'
+```
+
+### Demo
+
+Check out the demos in the `scripts/demo/` folder:
+
+```bash
+# Download model weights (required before running demos)
+python scripts/demo/download.py                      # model → params/
+
+# Interactive streaming chat (multi-turn, maintains history)
+python scripts/demo/stream_chat.py
+# Type your message after >>, type !exit to quit
+
+# Batch generation (5 hardcoded prompts, non-streaming)
+python scripts/demo/generate_batch.py
+
+# Single-prompt autoregressive streaming
+python scripts/demo/generate_ar.py
+```
+
+All generation demos use `temperature=0.8`, `top_p=0.95`, `top_k=50`, `max_tokens=2048` by default and require `params/` to contain model weights (run `download.py` first).
+
+Watch a video walkthrough on [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6).
+
+---
+
+See [Documentation](#documentation) for full references beyond the examples above.
+
+#### Text Generation
+
+Batch generation from a JSONL file:
 
 ```bash
 python scripts/tools/generate.py \
-    --param_path /path/to/model \
+    --param_path ./params \
-    --input_json_file /path/to/input.jsonl \
+    --input_json_file input.jsonl \
-    --output_json_file /path/to/output.jsonl
+    --output_json_file output.jsonl
 ```
 
 #### Docker
@@ -124,9 +174,6 @@ docker build -t astrai:latest .
 # Run with GPU support
 docker run --gpus all -it astrai:latest
 
-# Run with specific GPUs
-docker run --gpus '"device=0,1"' -it astrai:latest
-
 # Run inference server
 docker run --gpus all -p 8000:8000 astrai:latest \
   python -m scripts.tools.server --port 8000 --device cuda
@@ -143,84 +190,37 @@ docker compose --profile cpu up -d
 
 > **Note**: `--gpus all` is required for CUDA support. Without it, `torch.cuda.is_available()` will return `False`.
 
-#### Start HTTP Server
+#### HTTP API Examples
 
-Start the inference server with OpenAI and Anthropic-compatible HTTP API:
+Additional request examples beyond the [Getting Started](#getting-started) flow:
 
 ```bash
-python -m scripts.tools.server --port 8000 --device cuda
-```
-
-Make requests:
-
-```bash
-# OpenAI-compatible
-curl -X POST http://localhost:8000/v1/chat/completions \
-  -H "Content-Type: application/json" \
-  -d '{
-    "messages": [{"role": "user", "content": "Hello"}],
-    "max_tokens": 512
-  }'
-
 # OpenAI-compatible streaming
 curl -X POST http://localhost:8000/v1/chat/completions \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"messages":[{"role":"user","content":"Tell a story"}],"stream":true,"max_tokens":500}'
-    "messages": [{"role": "user", "content": "Tell a story"}],
-    "stream": true,
-    "max_tokens": 500
-  }'
 
 # Anthropic-compatible
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","system":"You are a helpful assistant.","messages":[{"role":"user","content":"Hello"}],"max_tokens":512}'
-    "model": "astrai",
-    "system": "You are a helpful assistant.",
-    "messages": [{"role": "user", "content": "Hello"}],
-    "max_tokens": 512
-  }'
 
 # Anthropic-compatible streaming with stop sequences
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","messages":[{"role":"user","content":"Write a story"}],"max_tokens":500,"stream":true,"stop_sequences":["The end"]}'
-    "model": "astrai",
-    "messages": [{"role": "user", "content": "Write a story"}],
-    "max_tokens": 500,
-    "stream": true,
-    "stop_sequences": ["The end"]
-  }'
 
 # Health check
 curl http://localhost:8000/health
 ```
 
-#### Demo
+See [Inference Guide](assets/docs/inference.md) for SSE streaming format, error codes, and stats endpoint.
-
-Check out the demos in the `scripts/demo/` folder:
-
-```bash
-# Download model weights (required before running demos)
-python scripts/demo/download.py
-
-# Interactive streaming chat
-python scripts/demo/stream_chat.py
-
-# Batch generation
-python scripts/demo/generate_batch.py
-
-# Auto‑regressive generation
-python scripts/demo/generate_ar.py
-```
-
-Watch a video walkthrough on [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6).
 
 ### Documentation
 
 | Document | Description |
 |----------|-------------|
-| [Parameter Guide](./assets/docs/params.md) | Training & inference parameters |
+| [CLI Reference](./assets/docs/params.md) | Parameters for all CLI tools (train, server, generate, preprocess) |
 | [Architecture](./assets/docs/architecture.md) | System architecture, class diagram & design patterns |
 | [Training](./assets/docs/training.md) | Training loop, strategies & formulas |
 | [Inference](./assets/docs/inference.md) | KVCache, continuous batching, sampling & HTTP API |

assets/docs/README-zh-CN.md

@@ -15,9 +15,9 @@
 <div align="center">
   <img src="https://img.shields.io/badge/python-3.12+-blue.svg" alt="python">
   <img src="https://img.shields.io/badge/license-GPL--3.0-blue.svg" alt="license">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/release.json" alt="release">
+  <img src="https://img.shields.io/github/v/release/ViperEkura/AstrAI?label=Release&color=76bad9" alt="release">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/stars.json" alt="stars">
+  <img src="https://img.shields.io/github/stars/ViperEkura/AstrAI?style=flat&label=Stars&color=76bad9" alt="stars">
-  <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/ViperEkura/AstrAI/gh-pages/badges/forks.json" alt="forks">
+  <img src="https://img.shields.io/github/forks/ViperEkura/AstrAI?style=flat&label=Forks&color=76bad9" alt="forks">
 </div>
 
 <br>
@@ -34,7 +34,8 @@
 ## 📖 目录
 
 - [特性](#特性)
-- [快速开始](#快速开始)
+- [快速上手](#快速上手)
+- [演示](#演示)
 - [文档](#文档)
 - [贡献](#贡献)
 - [社区](#社区)
@@ -55,33 +56,43 @@
 - 🤗 **HuggingFace 风格 API**: 类 HuggingFace 的 AutoModel/AutoTokenizer 接口，方便加载模型和分词器。
 - 🔌 **双 API 兼容**: 同时支持 OpenAI 和 Anthropic 聊天补全 API，开箱即用。
 
-### 快速开始
+### 快速上手
 
-#### 安装
+端到端演示，只需 5 步：
+
+**1. 安装**
 
 ```bash
 git clone https://github.com/ViperEkura/AstrAI.git
 cd AstrAI
 pip install -e .
+# pip install -e ".[dev]"    # 可选：开发依赖（pytest, ruff）
 ```
 
-安装开发依赖：
+**2. 下载模型**
 
 ```bash
-pip install -e ".[dev]"
+python scripts/demo/download.py    # 下载 1B 检查点到 params/
 ```
 
-#### 下载预训练模型
+**3. 预处理数据**
 
-下载预训练模型权重（1B 双语检查点）到 `params/` 目录：
+创建 `pretrain.json`（`seq` 策略的预处理配置）：
+
+```json
+{
+    "version": 1,
+    "input": {"sections": [{"field": "text", "action": "train"}]},
+    "preprocessing": {"max_seq_len": 2048},
+    "output": {"storage_format": "bin"}
+}
+```
 
 ```bash
-python scripts/demo/download.py
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c pretrain.json
 ```
 
-或从 [HuggingFace](https://huggingface.co/ViperEk/KHAOSZ) 手动下载放入 `params/`。
+**4. 训练**
-
-#### 训练模型
 
 ```bash
 export CUDA_VISIBLE_DEVICES=0,1,2,3
@@ -108,15 +119,54 @@ nohup python scripts/tools/train.py \
     > out.log 2> err.log &
 ```
 
-完整参数列表见[参数说明](./params.md)。
+**5. 启动服务并调用**
+
+```bash
+# 终端 1：启动服务
+python scripts/tools/server.py --param_path ./params --device cuda
+
+# 终端 2：发起请求
+curl http://localhost:8000/v1/chat/completions \
+  -H "Content-Type: application/json" \
+  -d '{"messages":[{"role":"user","content":"你好"}],"max_tokens":512}'
+```
+
+### 演示
+
+查看 `scripts/demo/` 文件夹中的演示：
+
+```bash
+# 下载模型权重（运行演示前必需）
+python scripts/demo/download.py                      # model → params/
+
+# 交互式流式聊天（多轮对话，保持历史记录）
+python scripts/demo/stream_chat.py
+# 在 >> 后输入消息，输入 !exit 退出
+
+# 批量生成（5 条硬编码提示词，非流式）
+python scripts/demo/generate_batch.py
+
+# 单条提示词自回归流式生成
+python scripts/demo/generate_ar.py
+```
+
+所有生成演示默认使用 `temperature=0.8`、`top_p=0.95`、`top_k=50`、`max_tokens=2048`，需要 `params/` 目录包含模型权重（请先运行 `download.py`）。
+
+观看 [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6) 上的视频演示。
+
+---
+
+更多选项请参考[文档](#文档)。
 
 #### 文本生成
 
+从 JSONL 文件批量生成：
+
 ```bash
 python scripts/tools/generate.py \
-    --param_path /path/to/model \
+    --param_path ./params \
-    --input_json_file /path/to/input.jsonl \
+    --input_json_file input.jsonl \
-    --output_json_file /path/to/output.jsonl
+    --output_json_file output.jsonl
 ```
 
 #### Docker
@@ -130,9 +180,6 @@ docker build -t astrai:latest .
 # 启用 GPU 运行
 docker run --gpus all -it astrai:latest
 
-# 指定特定 GPU
-docker run --gpus '"device=0,1"' -it astrai:latest
-
 # 运行推理服务
 docker run --gpus all -p 8000:8000 astrai:latest \
   python -m scripts.tools.server --port 8000 --device cuda
@@ -149,84 +196,37 @@ docker compose --profile cpu up -d
 
 > **注意**: 必须使用 `--gpus all` 才能启用 CUDA 支持，否则 `torch.cuda.is_available()` 将返回 `False`。
 
-#### 启动 HTTP 服务
+#### HTTP API 示例
 
-启动推理服务器，支持 OpenAI 和 Anthropic 兼容的 HTTP API：
+除[快速上手](#快速上手)流程外，更多请求示例：
 
 ```bash
-python -m scripts.tools.server --port 8000 --device cuda
-```
-
-发起请求：
-
-```bash
-# OpenAI 兼容
-curl -X POST http://localhost:8000/v1/chat/completions \
-  -H "Content-Type: application/json" \
-  -d '{
-    "messages": [{"role": "user", "content": "你好"}],
-    "max_tokens": 512
-  }'
-
 # OpenAI 兼容流式
 curl -X POST http://localhost:8000/v1/chat/completions \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"messages":[{"role":"user","content":"讲个故事"}],"stream":true,"max_tokens":500}'
-    "messages": [{"role": "user", "content": "讲个故事"}],
-    "stream": true,
-    "max_tokens": 500
-  }'
 
 # Anthropic 兼容
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","system":"你是一个乐于助人的助手。","messages":[{"role":"user","content":"你好"}],"max_tokens":512}'
-    "model": "astrai",
-    "system": "你是一个乐于助人的助手。",
-    "messages": [{"role": "user", "content": "你好"}],
-    "max_tokens": 512
-  }'
 
 # Anthropic 兼容流式并设置停止序列
 curl -X POST http://localhost:8000/v1/messages \
   -H "Content-Type: application/json" \
-  -d '{
+  -d '{"model":"astrai","messages":[{"role":"user","content":"写个故事"}],"max_tokens":500,"stream":true,"stop_sequences":["结束"]}'
-    "model": "astrai",
-    "messages": [{"role": "user", "content": "写个故事"}],
-    "max_tokens": 500,
-    "stream": true,
-    "stop_sequences": ["结束"]
-  }'
 
 # 健康检查
 curl http://localhost:8000/health
 ```
 
-#### 演示
+SSE 流式格式、错误码和统计端点详见[推理文档](./inference.md)。
-
-查看 `scripts/demo/` 文件夹中的演示：
-
-```bash
-# 下载模型权重（运行演示前必需）
-python scripts/demo/download.py
-
-# 交互式流式聊天
-python scripts/demo/stream_chat.py
-
-# 批量生成
-python scripts/demo/generate_batch.py
-
-# 自回归生成
-python scripts/demo/generate_ar.py
-```
-
-观看 [bilibili](https://www.bilibili.com/video/BV1fuLB6yEj6) 上的视频演示。
 
 ### 文档
 
 | 文档 | 说明 |
 |------|------|
-| [参数说明](./params.md) | 训练与推理参数配置 |
+| [CLI 参考](./params.md) | 所有 CLI 工具参数（训练、服务、生成、预处理） |
 | [架构文档](./architecture.md) | 系统架构、类图与设计模式 |
 | [训练文档](./training.md) | 训练循环、策略与公式 |
 | [推理文档](./inference.md) | KVCache、连续批处理、采样与 HTTP API |

assets/docs/architecture.md

@@ -1,5 +1,12 @@
 # AstrAI Architecture
 
+## Contents
+
+- [Class Diagram](#class-diagram) — Full Mermaid class diagram across 10+ namespaces
+- [Module Overview](#module-overview) — Component inventory per module
+- [Design Patterns](#design-patterns) — 13 documented patterns with classes
+- [Core Relationships](#core-relationships) — 11 key inter-component relationships
+
 ## Class Diagram
 
 ```mermaid
@@ -8,12 +15,13 @@ classDiagram
         class BaseConfig {
             +to_dict() Dict
             +from_dict(d) Self
-            +from_json(path) Self
+            +from_file(path) Self
-            +to_json(path)
+            +to_file(path)
         }
 
         class BaseModelConfig {
             +Optional[str] model_type
+            +float neftune_alpha
             +from_file(config_path) Self
             +to_file(config_path)
         }
@@ -51,41 +59,44 @@ classDiagram
             +Optional[int] dim_ffn
             +Optional[int] max_len
             +Optional[float] rope_theta
+            +str attn_type
             +Optional[int] n_heads
             +Optional[int] n_kv_heads
             +Optional[bool] use_qk_norm
             +Optional[bool] use_gated_attention
+            +str ffn_type
             +Optional[dict] rope_scaling
             +Optional[str] pooling_type
             +Optional[bool] normalize_embeddings
         }
 
         class ConfigFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +load(raw) BaseConfig
         }
 
         class InputConfig {
-            +str type
+            +Optional[List[Dict]] sections
-            +str messages_key
+            +Optional[Dict[str, Dict]] sources
-            +str prompt_key
-            +str response_key
-            +str text_key
         }
 
         class ProcessingConfig {
             +int max_seq_len
             +int min_chars
             +int max_chars
-            +bool deduplicate
             +Optional[int] max_items
+            +str packing_strategy
+            +int max_packed_len
+            +str truncation_mode
         }
 
         class OutputConfig {
             +Optional[str] domain_key
             +str storage_format
             +int max_tokens_per_shard
+            +Dict[str, str] dtype
+            +str position_ids_mode
         }
 
         class PipelineConfig {
@@ -110,7 +121,7 @@ classDiagram
             +float max_grad_norm
             +list gradient_checkpointing_modules
             +int start_epoch
-            +int start_batch
+            +int start_samples
             +str ckpt_dir
             +int ckpt_interval
             +str log_dir
@@ -128,7 +139,9 @@ classDiagram
             +str start_method
             +str device_type
             +Optional[Dataset] val_dataset
+            +Optional[float] val_split
             +int val_step
+            +float neftune_alpha
             +str parallel_mode
             +dict executor_kwargs
             +dict extra_kwargs
@@ -190,13 +203,13 @@ classDiagram
         }
 
         class StoreFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +create(storage_type) Store
         }
 
         class DatasetFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +create(train_type, window_size, stride) BaseDataset
             +load(train_type, load_path, window_size, stride, storage_type) BaseDataset
@@ -207,19 +220,20 @@ classDiagram
         class Checkpoint {
             +dict state_dict
             +int epoch
-            +int iteration
+            +int consumed_samples
             +dict extra
             +dict meta
             +dict config
             +save(save_dir)
             +load(save_dir, broadcast) Checkpoint
+            +load_any(save_dir, broadcast) Optional[Checkpoint]
         }
     }
 
     namespace model {
         class AutoModel {
             +BaseModelConfig config
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +get_component_class(name) Type
             +from_pretrained(path, disable_random_init, strict) nn.Module
@@ -342,7 +356,9 @@ classDiagram
 
         class Embedding {
             +Parameter weight
+            +float neftune_noise_alpha
             +forward(x) Tensor
+            +set_neftune_alpha(alpha)
         }
     }
 
@@ -395,24 +411,19 @@ classDiagram
     }
 
     namespace factory {
-        class Registry {
-            +Dict _entries
-            +register(name, component_cls, category, priority)
-            +get(name) Type
-            +list_names() List[str]
-        }
-
         class BaseFactory {
-            +Registry _registry
+            +Dict _entries
-            +register(name, category, priority) decorator
+            +register(name) decorator
             +create(name, *args, **kwargs) T
+            +get_component_class(name) Type
             +list_registered() list
+            +is_registered(name) bool
         }
 
         class MaskBuilderFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
-            +create(input_type, config, tokenizer) BaseMaskBuilder
+            +create(name, *args, **kwargs) BaseMaskBuilder
         }
     }
 
@@ -435,13 +446,15 @@ classDiagram
             +dict model_config
             +BaseExecutor executor
             +int epoch
-            +int iteration
+            +int consumed_samples
             +float loss
+            +float grad_norm
             +DataLoader val_dataloader
             +float val_loss
             +int world_size
             +int rank
             +dict kwargs
+            +optimizer_step() int
         }
 
         class TrainContextBuilder {
@@ -461,7 +474,7 @@ classDiagram
         }
 
         class StrategyFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +create(train_type, model, device, **kwargs) BaseStrategy
         }
@@ -502,9 +515,9 @@ classDiagram
         }
 
         class SchedulerFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
-            +create(optimizer, schedule_type, **kwargs) BaseScheduler
+            +create(name, *args, **kwargs) BaseScheduler
         }
 
         class CosineScheduler {
@@ -521,6 +534,13 @@ classDiagram
             +int t_mult
         }
 
+        class WSDScheduler {
+            +int warmup_steps
+            +int stable_steps
+            +int decay_steps
+            +float min_rate
+        }
+
         class TrainCallback {
             <<protocol>>
             +on_train_begin(context)
@@ -581,23 +601,11 @@ classDiagram
         }
 
         class CallbackFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +create(name, **kwargs) TrainCallback
         }
 
-        class Muon {
-            +float lr
-            +float momentum
-            +float weight_decay
-            +bool nesterov
-            +int ns_steps
-            +Optional[float] adamw_lr
-            +tuple adamw_betas
-            +float adamw_eps
-            +float adamw_wd
-            +step(closure) Optional[float]
-        }
     }
 
     namespace inference {
@@ -802,7 +810,9 @@ classDiagram
 
         class ChatMessage {
             +str role
-            +str content
+            +Optional[str] content
+            +Optional[List[Dict]] tool_calls
+            +Optional[str] tool_call_id
         }
 
         class ChatCompletionRequest {
@@ -819,6 +829,8 @@ classDiagram
             +Optional[float] frequency_penalty
             +Optional[Dict[int, float]] logit_bias
             +Optional[str] user
+            +Optional[List[ToolDef]] tools
+            +Optional[Union[str, Dict]] tool_choice
         }
 
         class AnthropicMessage {
@@ -842,7 +854,7 @@ classDiagram
             <<abstract>>
             +prepare(request, engine) Tuple[str, GenContext, List[str]]
             +format_stream_start(ctx) List[str]
-            +format_chunk(token) str
+            +format_chunk(token) List[str]
             +format_stream_end(ctx, stop) List[str]
             +format_response(ctx, content, stop) Dict
         }
@@ -850,7 +862,7 @@ classDiagram
         class OpenAIResponseBuilder {
             +prepare(request, engine) Tuple
             +format_stream_start(ctx) List[str]
-            +format_chunk(token) str
+            +format_chunk(token) List[str]
             +format_stream_end(ctx, stop) List[str]
             +format_response(ctx, content, stop) Dict
         }
@@ -858,7 +870,7 @@ classDiagram
         class AnthropicResponseBuilder {
             +prepare(request, engine) Tuple
             +format_stream_start(ctx) List[str]
-            +format_chunk(token) str
+            +format_chunk(token) List[str]
             +format_stream_end(ctx, stop) List[str]
             +format_response(ctx, content, stop) Dict
         }
@@ -891,9 +903,9 @@ classDiagram
             +str yielded
         }
 
-        class app {
+        class get_app {
-            <<singleton>>
+            <<module>>
-            +FastAPI app
+            +get_app() FastAPI
         }
     }
 
@@ -975,7 +987,7 @@ classDiagram
         }
 
         class ExecutorFactory {
-            +Registry _registry
+            +Dict _entries
             +register(name) decorator
             +create(parallel_mode, **kwargs) BaseExecutor
         }
@@ -1018,6 +1030,7 @@ classDiagram
     BaseStrategy <|-- GRPOStrategy
     BaseScheduler <|-- CosineScheduler
     BaseScheduler <|-- SGDRScheduler
+    BaseScheduler <|-- WSDScheduler
     TrainCallback <|-- GradientClippingCallback
     TrainCallback <|-- GradientCheckpointingCallback
     TrainCallback <|-- CheckpointCallback
@@ -1080,7 +1093,6 @@ classDiagram
     DecoderBlock *-- RMSNorm
     ChatCompletionRequest *-- ChatMessage
     MessagesRequest *-- AnthropicMessage
-    BaseFactory *-- Registry
     BaseExecutor *-- GradientState
     AccumOptimizer o-- GradientState
     AccumScheduler o-- GradientState
@@ -1157,16 +1169,16 @@ classDiagram
 
 | Module | Components | Description |
 |--------|------------|-------------|
-| **astrai.config** | BaseConfig, BaseModelConfig, AutoRegressiveLMConfig, EncoderConfig, ConfigFactory, TrainConfig, PipelineConfig, InputConfig, ProcessingConfig, OutputConfig | Configuration management (to_dict/from_dict, to_file/from_file, from_json/to_json) |
+| **astrai.config** | BaseConfig, BaseModelConfig, AutoRegressiveLMConfig, EncoderConfig, ConfigFactory, TrainConfig, PipelineConfig, InputConfig, ProcessingConfig, OutputConfig | Configuration management (to_dict/from_dict, to_file/from_file) |
 | **astrai.preprocessing** | BaseMaskBuilder, MaskBuilderFactory, SectionedMaskBuilder, Pipeline, filter_by_length, PackingStrategy, PackingStrategyFactory, PositionIdStrategy, PositionIdStrategyFactory, StoreWriter, StoreWriterFactory | Declarative JSON-driven data preprocessing |
 | **astrai.dataset** | BaseDataset–GRPODataset, Store–MmapStore, StoreFactory, ResumableDistributedSampler, DatasetFactory | Dataset loading and management |
 | **astrai.serialization** | Checkpoint | Model serialization |
 | **astrai.model** | AutoModel, AutoRegressiveLM, EmbeddingEncoder, DecoderBlock, GQA, MLA, MLP, DeepSeekMoE, AttnFactory, FFNFactory, RMSNorm, Linear, RotaryEmbedding, Embedding | Neural network model |
 | **astrai.tokenize** | AutoTokenizer, ChatTemplate | Tokenizer and chat template |
-| **astrai.trainer** | Trainer, TrainContext, TrainContextBuilder, BaseStrategy–GRPOStrategy, StrategyFactory, BaseScheduler–SGDRScheduler, SchedulerFactory, TrainCallback(Protocol)–ValidationCallback, CallbackFactory, Muon | Training workflow |
+| **astrai.trainer** | Trainer, TrainContext, TrainContextBuilder, BaseStrategy–GRPOStrategy, StrategyFactory, BaseScheduler–WSDScheduler, SchedulerFactory, TrainCallback(Protocol)–ValidationCallback, CallbackFactory | Training workflow |
 | **astrai.inference** | InferenceEngine, InferenceScheduler, Executor, KVCache–KvcacheView, Allocator–Storage, Task, TaskManager, TaskStatus, GenerationRequest, GenerateResult, BaseSamplingStrategy–SamplingPipeline, ProtocolHandler, ResponseBuilder, OpenAIResponseBuilder, AnthropicResponseBuilder, StopChecker, GenContext, ChatMessage–MessagesRequest, app | Inference service |
 | **astrai.parallel** | spawn_parallel_fn, setup_parallel, get_rank/get_world_size/get_current_device, only_on_rank, BaseExecutor, ExecutorFactory, NoneExecutor, DDPExecutor, FSDPExecutor, GradientState, AccumOptimizer, AccumScheduler, ParallelModel, RowParallelLinear, ColumnParallelLinear | Distributed parallel & gradient accumulation |
-| **astrai.factory** | Registry, BaseFactory[T] | Component registration |
+| **astrai.factory** | BaseFactory | Component registration |
 | **astrai.protocols** | OptimizerProtocol, SchedulerProtocol | Structural subtyping for optimizer/scheduler wrappers |
 
 ## Design Patterns
@@ -1174,7 +1186,7 @@ classDiagram
 | Pattern | Classes | Purpose |
 |---------|---------|---------|
 | **Factory** | `AttnFactory`, `FFNFactory`, `StrategyFactory`, `DatasetFactory`, `SchedulerFactory`, `CallbackFactory`, `StoreFactory`, `ConfigFactory`, `ExecutorFactory` | Decorator-based component creation |
-| **Registry** | `BaseFactory`, `Registry` | Component registration with category/priority |
+| **Registry** | `BaseFactory` | Component registration |
 | **Strategy** | `SEQStrategy`, `SFTStrategy`, `DPOStrategy`, `GRPOStrategy` | Training strategy switching |
 | **Strategy (Sampling)** | `TemperatureStrategy`, `TopKStrategy`, `TopPStrategy`, `SamplingPipeline` | Composable logit transformations |
 | **Strategy (API)** | `ResponseBuilder`, `OpenAIResponseBuilder`, `AnthropicResponseBuilder` | HTTP API handler with format hooks |
@@ -1197,7 +1209,7 @@ classDiagram
 6. **Distributed**: `spawn_parallel_fn` + `setup_parallel` for multi-process DDP
 7. **Dataset Loading**: `DatasetFactory` creates datasets, `Store` (H5Store/MmapStore) loads data with explicit `_length` and multi-segment `_data`
 8. **Checkpoint**: `Checkpoint` saves/loads safetensors + metadata (rank-0 only), extra state saved as `{key}.pt`
-9. **Scheduler**: `SchedulerFactory` creates `CosineScheduler`/`SGDRScheduler`
+9. **Scheduler**: `SchedulerFactory` creates `CosineScheduler`/`SGDRScheduler`/`WSDScheduler`
 10. **AutoModel**: `from_pretrained()` loads `config.json` + `model.safetensors`, `_disable_random_init` replaces `nn.init.*` with no-ops
 11. **Protocols**: `OptimizerProtocol` / `SchedulerProtocol` — structural subtyping for `AccumOptimizer` / `AccumScheduler` wrappers
 

assets/docs/dataflow.md

@@ -1,17 +1,58 @@
 # Data Flow
 
-This document describes the data pipeline: from raw text to model input tensors.
+This document describes the data pipeline: from raw text to model input tensors. For creating preprocessing configs, see [Preprocessing Guide](preprocessing.md).
+
+## Contents
+
+- [Overview](#overview)
+- [Data Preparation](#data-preparation) — tokenization, format detection, backends
+- [Data Keys by Training Type](#data-keys-by-training-type)
+- [Dataset Architecture](#dataset-architecture)
+- [Sampler](#sampler)
+- [DataLoader](#dataloader)
 
 ## Overview
 
 ```
-Raw Text → AutoTokenizer → Token IDs → .h5/.bin → Store.load() → Store.fetch() → Dataset → Sampler → DataLoader → Training/Inference
+JSONL Lines → Pipeline (mask builder) → Tokenized Tensors
+                                              ↓
+                                      .h5 or .bin storage
+                                              ↓
+                                      Store.load()
+                                              ↓
+                                      Store.fetch(begin, end, keys)
+                                              ↓
+                                      BaseDataset.__getitem__(idx)
+                                              ↓
+                                      Sampler → DataLoader → Training / Inference
 ```
 
 ## Data Preparation
 
 Raw text is tokenized via `AutoTokenizer.encode()` and saved as HDF5 (`.h5`) or binary (`.bin` + `meta.json`) files with keyed tensor groups.
 
+### Tokenization
+
+The `Pipeline` reads JSONL lines, applies the mask builder (see [Preprocessing](preprocessing.md)), and produces flat token sequences:
+
+```python
+# Per JSONL line: messages → chat template → token IDs + loss mask
+tokens = tokenizer.encode(rendered_text)        # List[int]
+loss_mask = [0, 0, 0, 1, 1, 1, 1, 1, 1]        # 0=masked, 1=train
+# Stored as flat tensors, packed with other lines by packing strategy
+```
+
+The output `meta.json` records the storage format, key names, dtype, total token count, and tensor shapes for each shard.
+
+### Format Detection
+
+`detect_format(load_path)` inspects the path:
+
+- If `load_path` is a file: checks suffix — `.h5`/`.hdf5` → `"h5"`, unknown suffix raises `ValueError`
+- If `load_path` is a directory: recursively globs for `*.h5`/`*.hdf5` files → `"h5"`, or `*.bin` + `**/meta.json` → `"bin"`
+
+### Store Backends
+
 Storage format is auto-detected by `detect_format()`; backends are dispatched via registry:
 
 ```
@@ -19,7 +60,11 @@ StoreFactory.create("h5")  → H5Store
 StoreFactory.create("bin") → MmapStore
 ```
 
-H5 backend supports shared memory via `.share_memory_()`. Bin (mmap) uses OS page-cache sharing natively.
+**H5Store**: Reads HDF5 files, supports `share_memory_()` for multi-process DataLoader workers (copies tensors to shared memory).
+
+**MmapStore**: Memory-maps `.bin` files. OS page cache sharing is native — no explicit `share_memory_()` needed. Uses `torch.from_numpy(np.memmap(...))`.
+
+Both backends normalise tensors into `Store._data[Dict[str, List[Tensor]]]` + `Store._cum[Dict[str, List[int]]]` (cumulative lengths for bisect-based indexing).
 
 ## Data Keys by Training Type
 
@@ -38,7 +83,7 @@ DatasetFactory.load(train_type, load_path, window_size, stride=None, storage_typ
     → detect_format(load_path)
     → StoreFactory.create(storage_type)
     → Store.load(load_path)
-      → H5Store._normalize() / MmapStore._normalize()
+      → _normalize(raw)  # base Store, shared by both backends
         → Store._data[Dict[str, List[Tensor]]] + _cum[Dict[str, List[int]]]
           → BaseDataset.__getitem__(idx)
             → get_index(idx) → [begin, end)
@@ -61,4 +106,4 @@ DatasetFactory.load(train_type, load_path, window_size, stride=None, storage_typ
 
 Standard PyTorch `DataLoader` with configurable `batch_size`, `num_workers`, `pin_memory`, `prefetch_factor`. Sampler produces indices; dataloader fetches tensor batches via `__getitem__`.
 
-> Document Update Time: 2026-05-30
+> Document Update Time: 2026-06-19

assets/docs/inference.md

@@ -1,5 +1,16 @@
 # Inference
 
+## Contents
+
+- [KV Cache](#kv-cache)
+- [KVCache System](#kvcache-system)
+- [Continuous Batching](#continuous-batching)
+- [Sampling](#sampling-strategy-pattern)
+- [Protocol Handlers](#protocol-handlers-strategy-pattern)
+- [Engine & GenerateResult](#engine--generateresult)
+- [HTTP API](#http-api) — endpoints, SSE, errors, stats
+- [Engine API](#engine-api)
+
 ## KV Cache
 
 At decode time, only the last query token matters. All previous K/V are cached to avoid recomputation:
@@ -12,7 +23,7 @@ RoPE is applied **before** KV cache write, not after — otherwise position enco
 
 ## KVCache System
 
-Six classes (plus two helpers) working together:
+Seven classes working together:
 
 ```
 KVCache (facade)
@@ -133,6 +144,84 @@ Supports `stop_sequences` and streaming via `event: content_block_delta`.
 | `max_tokens` | Optional[int] | None | Max generation length |
 | `stream` | bool | False | Stream output |
 
+### SSE Streaming Format
+
+**OpenAI** (`/v1/chat/completions`, `stream=true`):
+
+```
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":...,"model":"astrai",
+       "choices":[{"index":0,"delta":{"role":"assistant"},"finish_reason":null}]}
+
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":0,"model":"astrai",
+       "choices":[{"index":0,"delta":{"content":"Hello"},"finish_reason":null}]}
+
+data: {"id":"chatcmpl-...","object":"chat.completion.chunk","created":...,"model":"astrai",
+       "choices":[{"index":0,"delta":{},"finish_reason":"stop"}]}
+
+data: {"prompt_tokens":5,"completion_tokens":1,"total_tokens":6}
+
+data: [DONE]
+```
+
+**Anthropic** (`/v1/messages`, `stream=true`):
+
+```
+event: message_start
+data: {"type":"message_start","message":{"id":"msg_...","model":"astrai","role":"assistant",
+       "content":[],"usage":{"input_tokens":0}}}
+
+event: content_block_start
+data: {"type":"content_block_start","index":0,"content_block":{"type":"text","text":""}}
+
+event: content_block_delta
+data: {"type":"content_block_delta","index":0,"delta":{"type":"text_delta","text":"Hello"}}
+
+event: content_block_stop
+data: {"type":"content_block_stop","index":0}
+
+event: message_delta
+data: {"type":"message_delta","delta":{"stop_reason":"end_turn","stop_sequence":null},"usage":{...}}
+
+event: message_stop
+data: {"type":"message_stop"}
+```
+
+### Error Responses
+
+The server returns standard HTTP status codes. Pydantic validation errors (e.g. missing required fields)
+are handled automatically by FastAPI with 422 status. The only application-level error is engine initialization:
+
+| Status | Meaning |
+|--------|---------|
+| 200 | Success |
+| 422 | Unprocessable entity (Pydantic validation) |
+| 503 | Service unavailable (model not loaded, engine not ready) |
+
+Error response body (503):
+
+```json
+{
+    "detail": "Engine not initialized"
+}
+```
+
+### Stats Endpoint
+
+```
+GET /stats
+```
+
+Response:
+
+```json
+{
+    "total_tasks": 128,
+    "total_tokens": 10240,
+    "active_tasks": 3,
+    "waiting_queue": 2
+}
+```
+
 ## Engine API
 
 ```python
@@ -149,4 +238,4 @@ async for token in engine.generate_async("Hello", ...):    # -> AsyncGenerator[s
     print(token)
 ```
 
-> Document Update Time: 2026-05-30
+> Document Update Time: 2026-06-19

assets/docs/params.md

@@ -1,4 +1,11 @@
-# Parameter Documentation
+# CLI Parameter Reference
+
+## Contents
+
+- [Training Parameters](#training-parameters)
+- [Inference Server](#inference-server-serverpy)
+- [Generate](#generate-generatepy)
+- [Preprocess](#preprocess-preprocesspy)
 
 ## Training Parameters
 
@@ -46,7 +53,7 @@
 | `--ckpt_interval` | Iterations between checkpoints | 5000 |
 | `--ckpt_dir` | Checkpoint save directory | checkpoint |
 | `--start_epoch` | Resume from epoch (0 = from scratch) | 0 |
-| `--start_batch` | Resume from batch iteration | 0 |
+| `--start_samples` | Resume from sample count per rank | 0 |
 
 ### Validation
 
@@ -60,8 +67,8 @@
 | Parameter | Description | Default |
 |-----------|-------------|---------|
 | `--log_dir` | Directory for metric logs | checkpoint/logs |
-| `--log_interval` | Number of batch iterations between metric logs | 100 |
+| `--log_interval` | Number of optimizer steps between metric logs | 1 |
-| `--metrics` | Metrics to log (e.g. --metrics loss lr val_loss) | ["loss", "lr"] |
+| `--metrics` | Metrics to log (e.g. --metrics loss lr val_loss) | ["loss", "lr", "grad_norm"] |
 
 ### Gradient Checkpointing
 
@@ -86,11 +93,23 @@
 | Parameter | Description | Default | Used by |
 |-----------|-------------|---------|---------|
 | `--dpo_beta` | DPO beta value | 0.1 | `dpo` |
-| `--label_smoothing` | Label smoothing for cross-entropy loss | 0.05 | `seq`, `sft` |
+| `--label_smoothing` | Label smoothing for cross-entropy loss | 0.0 | `seq`, `sft` |
 | `--group_size` | GRPO group size | 4 | `grpo` |
 | `--grpo_clip_eps` | GRPO clipping epsilon | 0.2 | `grpo` |
 | `--grpo_kl_coef` | GRPO KL penalty coefficient | 0.01 | `grpo` |
 | `--grpo_sync_interval` | GRPO ref_model sync interval (steps) | 200 | `grpo` |
+| `--neftune_alpha` | NEFTune noise alpha (0=disabled, typical: 5.0) | 0.0 | `sft` |
+
+### Scheduler
+
+| Parameter | Description | Default |
+|-----------|-------------|---------|
+| `--schedule_type` | LR scheduler type (`cosine`, `sgdr`, `wsd`) | cosine |
+| `--min_rate` | Minimum LR as fraction of base LR | None (scheduler default) |
+| `--cycle_length` | SGDR first cycle length in steps | None (total_steps - warmup_steps) |
+| `--t_mult` | SGDR cycle length multiplier per restart | 2 |
+| `--stable_steps` | WSD stable plateau steps | None (required for wsd) |
+| `--decay_steps` | WSD decay steps | None (total_steps - warmup_steps - stable_steps) |
 
 ### Usage Example
 
@@ -121,4 +140,64 @@ nohup python scripts/tools/train.py \
 
 ---
 
-> Document Update Time: 2026-05-24
+## Inference Server (`server.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `--host` | str | `0.0.0.0` | Host address |
+| `--port` | int | `8000` | Port number |
+| `--param_path` | path | `project_root/params` | Path to model parameters |
+| `--device` | str | `cuda` | Device to load model on |
+| `--dtype` | str | `bfloat16` | Model weights dtype (`bfloat16`, `float16`, `float32`) |
+| `--max_batch_size` | int | `16` | Maximum batch size for continuous batching |
+| `--reload` | flag | `False` | Enable auto-reload for development |
+
+Usage:
+```bash
+python scripts/tools/server.py --param_path ./params --device cuda --dtype bfloat16
+```
+
+See [Inference Guide](inference.md) for HTTP API documentation.
+
+## Generate (`generate.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `--param_path` | str | required | Path to the model directory |
+| `--input_json_file` | str | required | Path to the input JSONL file |
+| `--output_json_file` | str | required | Path to the output JSONL file |
+| `--question_key` | str | `question` | Key for the question in input JSON |
+| `--response_key` | str | `response` | Key for the response in output JSON |
+| `--temperature` | float | `0.60` | Sampling temperature |
+| `--top_k` | int | `30` | Top-k filtering |
+| `--top_p` | float | `0.95` | Nucleus sampling threshold |
+| `--batch_size` | int | `1` | Batch size for generation |
+| `--max_tokens` | int | model config `max_len` | Maximum tokens to generate |
+
+Usage:
+```bash
+python scripts/tools/generate.py \
+    --param_path ./params \
+    --input_json_file input.jsonl \
+    --output_json_file output.jsonl
+```
+
+## Preprocess (`preprocess.py`)
+
+| Parameter | Type | Default | Description |
+|-----------|------|---------|-------------|
+| `input_files` | path(s) | required | Input JSONL file(s), supports glob (`data/*.jsonl`) |
+| `--output_dir`, `-o` | path | required | Output directory for processed data |
+| `--config`, `-c` | path | required | Preprocessing pipeline config (JSON) |
+| `--tokenizer_path` | str | `params` | Path to tokenizer directory |
+
+Usage:
+```bash
+python scripts/tools/preprocess.py data/*.jsonl -o output/ -c sft.json
+```
+
+See [Preprocessing Guide](preprocessing.md) for config file format and examples.
+
+---
+
+> Document Update Time: 2026-06-19

assets/docs/preprocessing.md

@@ -2,6 +2,17 @@
 
 Declarative JSON-driven data preprocessing. One `SectionedMaskBuilder` handles all formats via `input.sections` (single-output) or `input.sources` (multi-output).
 
+## Contents
+
+- [Philosophy](#philosophy)
+- [Config Structure](#config-structure)
+- [Quick Start](#quick-start) — SFT Chat, SFT Instruction, Pretrain, DPO, GRPO examples
+- [Configuration Reference](#configuration-reference) — all fields
+- [Mask Algorithm](#mask-algorithm)
+- [Output Layout](#output-layout)
+- [CLI](#cli)
+- [Python API](#python-api)
+
 ## Philosophy
 
 | Component | Responsibility |
@@ -15,8 +26,9 @@ A single config file captures the entire pipeline, reusable and version-controll
 
 ```json
 {
+  "version":       1,
   "input":         {},   // sections (single) or sources (multi)
-  "mask":          {},   // role → "train" | "mask"
+  "mask":          {},   // role -> "train" | "mask"
   "mask_default":  "mask",
   "preprocessing": {},
   "output":        {}
@@ -209,11 +221,12 @@ Config:
 }
 ```
 
-Output keys: `prompts`, `responses`, `masks`, `rewards` (float32)
+Output keys: `prompts`, `prompts_mask`, `responses`, `masks`, `rewards` (float32)
 
 - `action: "value"` — extract raw values from JSONL without tokenisation
 - `list_field: true` — tokenise each list element independently, then concatenate
 - `mask_key: "masks"` — rename the auto-generated mask key (default: `responses_mask`)
+- `prompts_mask` is auto-generated (all masked) and unused by GRPOStrategy
 
 ---
 
@@ -255,7 +268,7 @@ When `sources` is set, `sections` is ignored.
 | `storage_format` | str | `"bin"` | `"bin"` (mmap) or `"h5"` |
 | `max_tokens_per_shard` | int | `100000000` | Flush threshold in cumulative tokens |
 | `dtype` | dict[str, str] | `{}` | Per-key tensor dtype override (e.g. `{"loss_mask": "bool"}`) |
-| `position_ids_mode` | str | `"none"` | How to compute position_ids: `"none"`, `"doc_reset"`, `"continuous"` |
+| `position_ids_mode` | str | `"doc_reset"` | How to compute position_ids: `"none"`, `"doc_reset"`, `"continuous"` |
 
 ---
 
@@ -263,12 +276,11 @@ When `sources` is set, `sections` is ignored.
 
 ### Template mode (`template: true`)
 
-For each message in the field's array:
-
 1. Prepend BOS token (masked)
-2. Render through `chat_template` for that single message
+2. For each message in the field's array:
-3. Encode rendered text
+   1. Render through `chat_template` for that single message
-4. Apply mask rule for the message's role
+   2. Encode rendered text
+   3. Apply mask rule for the message's role
 
 ### Non-template mode
 
@@ -276,7 +288,7 @@ Encode the field value as text. Mask value is 1 (train) or 0 (mask) per the sect
 
 ### Text config detection
 
-When no section uses `template` and all sections have `action: "train"`, the builder skips mask generation entirely — all tokens are trained.
+When no section uses `template` and all sections have `action: "train"`, the builder omits `loss_mask` from the output — all tokens are trained.
 
 ---
 
@@ -287,13 +299,15 @@ When no section uses `template` and all sections have `action: "train"`, the bui
 ```
 output/
   __default__/
-    meta.json
+    shard_0000/
-    sequence.bin
+      meta.json
-    loss_mask.bin
+      sequence.bin
+      loss_mask.bin
   wiki/
-    meta.json
+    shard_0000/
-    sequence.bin
+      meta.json
-    loss_mask.bin
+      sequence.bin
+      loss_mask.bin
 ```
 
 ### Multi-Shard (`bin`)
@@ -313,7 +327,7 @@ output/
       loss_mask.bin
 ```
 
-`MmapStore` discovers all shards under the domain directory via `rglob("meta.json")`.
+For `bin` format, `MmapStore` discovers all shards under the domain directory via `rglob("meta.json")`. For `h5` format, `H5Store` discovers `.h5`/`.hdf5` files via recursive glob.
 
 ---
 
@@ -338,7 +352,7 @@ python scripts/tools/preprocess.py data/grpo/*.jsonl -o output/grpo/ -c configs/
 from astrai.preprocessing.pipeline import Pipeline
 from astrai.config.preprocess_config import PipelineConfig
 
-config = PipelineConfig.from_json("sft.json")
+config = PipelineConfig.from_file("sft.json")
 Pipeline(
     config,
     ["data_part1.jsonl", "data_part2.jsonl"],

assets/docs/training.md

@@ -1,5 +1,18 @@
 # Training
 
+## Contents
+
+- [Autoregression](#autoregression)
+- [Causal Mask](#causal-mask)
+- [Rotary Position Embedding (RoPE)](#rotary-position-embedding-rope)
+- [Training Loop](#training-loop)
+- [Strategies](#strategies) — SEQ, SFT, DPO, GRPO
+- [LR Schedulers](#lr-schedulers)
+- [Gradient Checkpointing](#gradient-checkpointing)
+- [Checkpoint](#checkpoint)
+- [TrainContextBuilder](#traincontextbuilder-builder-pattern)
+- [Training CLI](#training-cli)
+
 ### Autoregression
 
 Given a token sequence, the model predicts the probability of the next token. Each generated token is appended to the input and fed back, repeating until an end-of-sequence token or max length.
@@ -45,7 +58,9 @@ on_train_begin
         context.loss = loss.item()
         stand_loss = loss / executor.grad_accum_steps
         executor.backward(stand_loss)
-        context.iteration += 1
+        context.consumed_samples += (
+            context.config.batch_per_device * context.world_size
+        )
         on_batch_end
 
         if executor.sync_gradients:
@@ -65,13 +80,13 @@ on_train_end
 | `on_train_begin` | Before training starts | `GradientCheckpointingCallback` |
 | `on_epoch_begin` | Start of each epoch | `ProgressBarCallback` |
 | `on_batch_begin` | Every batch | — |
-| `on_optimizer_step` | Every accumulation window | `GradientClippingCallback`, `ValidationCallback` |
+| `on_optimizer_step` | Every accumulation window | `GradientClippingCallback`, `MetricLoggerCallback`, `ValidationCallback` |
 | `on_batch_end` | Every batch | `CheckpointCallback`, `MetricLoggerCallback`, `ProgressBarCallback` |
 | `on_epoch_end` | End of each epoch | `ProgressBarCallback` |
 | `on_error` | On exception during training | `CheckpointCallback`, `MetricLoggerCallback` |
 | `on_train_end` | Training ends (always via finally) | `CheckpointCallback`, `MetricLoggerCallback`, `GradientCheckpointingCallback` |
 
-Default callbacks (in order): `gradient_checkpointing` (activation checkpointing, optional), `checkpoint` (safetensors, rank-0), `metric_logger` (JSONL, rank-0), `progress_bar` (tqdm), `gradient_clipping`, `validation` (periodic validation on val_dataset).
+Default callbacks (in order): `gradient_checkpointing` (activation checkpointing, optional), `checkpoint` (safetensors, rank-0), `validation` (periodic validation on val_dataset), `metric_logger` (JSONL, rank-0), `progress_bar` (tqdm), `gradient_clipping`.
 
 ## Strategies
 
@@ -127,8 +142,9 @@ Keys: `prompts`, `responses`, `masks`, `rewards`.
 |------|-------|-------------|
 | Cosine | `CosineScheduler` | Linear warmup → cosine decay to `min_rate` |
 | SGDR | `SGDRScheduler` | Cosine annealing with warm restarts (`t_mult=2`) |
+| WSD | `WSDScheduler` | Warmup-Stable-Decay with sqrt cooldown |
 
-Created by `SchedulerFactory.create(optimizer, schedule_type, **kwargs)`. Valid types: `"cosine"`, `"sgdr"`. Omit to use no scheduler.
+Created by `SchedulerFactory.create(schedule_type, optimizer, **kwargs)`. Valid types: `"cosine"`, `"sgdr"`, `"wsd"`. Omit to use no scheduler.
 
 ## Gradient Checkpointing
 
@@ -144,8 +160,8 @@ Callback wraps each `DecoderBlock.forward` with `torch.utils.checkpoint.checkpoi
 ## Checkpoint
 
 ```
-Checkpoint(state_dict, epoch, iteration, extra, meta, config)
+Checkpoint(state_dict, epoch, consumed_samples, extra, meta, config)
-  ├── save(save_dir)    rank-0 only: meta.json (epoch/iteration/timestamp) + config.json (model config) + model.safetensors + optional {key}.pt (optimizer.pt, scheduler.pt)
+  ├── save(save_dir)    rank-0 only: meta.json (epoch/consumed_samples/timestamp) + config.json (model config) + model.safetensors + optional {key}.pt (optimizer.pt, scheduler.pt)
   └── load(save_dir, broadcast=False)    loads from local disk; set broadcast=True to broadcast metadata from rank-0
 ```
 

astrai/__init__.py

@@ -1,34 +1,98 @@
-__version__ = "1.3.7"
+__version__ = "1.3.8"
 __author__ = "ViperEkura"
 
 from astrai.config import (
     AutoRegressiveLMConfig,
+    BaseModelConfig,
+    ConfigFactory,
     EncoderConfig,
+    PipelineConfig,
     TrainConfig,
 )
-from astrai.dataset import DatasetFactory
+from astrai.dataset import (
+    BaseDataset,
+    DatasetFactory,
+    ResumableDistributedSampler,
+    Store,
+    StoreFactory,
+)
 from astrai.factory import BaseFactory
 from astrai.inference import (
     GenerationRequest,
     InferenceEngine,
+    ProtocolHandler,
+    SamplingPipeline,
+    get_app,
+    run_server,
+    sample,
+)
+from astrai.model import (
+    AutoModel,
+    AutoRegressiveLM,
+    EmbeddingEncoder,
+    LoRAConfig,
+    inject_lora,
+)
+from astrai.parallel import (
+    ExecutorFactory,
+    get_rank,
+    get_world_size,
+    only_on_rank,
+    spawn_parallel_fn,
+)
+from astrai.preprocessing import Pipeline, filter_by_length
+from astrai.serialization import Checkpoint
+from astrai.tokenize import AutoTokenizer, ChatTemplate
+from astrai.trainer import (
+    BaseScheduler,
+    BaseStrategy,
+    CallbackFactory,
+    SchedulerFactory,
+    StrategyFactory,
+    TrainCallback,
+    Trainer,
 )
-from astrai.model import AutoModel, AutoRegressiveLM
-from astrai.tokenize import AutoTokenizer
-from astrai.trainer import CallbackFactory, SchedulerFactory, StrategyFactory, Trainer
 
 __all__ = [
     "AutoRegressiveLM",
     "AutoRegressiveLMConfig",
-    "EncoderConfig",
+    "AutoModel",
-    "TrainConfig",
-    "DatasetFactory",
     "AutoTokenizer",
+    "BaseDataset",
+    "BaseFactory",
+    "BaseModelConfig",
+    "BaseScheduler",
+    "BaseStrategy",
+    "CallbackFactory",
+    "ChatTemplate",
+    "Checkpoint",
+    "ConfigFactory",
+    "DatasetFactory",
+    "EmbeddingEncoder",
+    "EncoderConfig",
+    "ExecutorFactory",
     "GenerationRequest",
     "InferenceEngine",
-    "Trainer",
+    "LoRAConfig",
-    "CallbackFactory",
+    "Pipeline",
-    "StrategyFactory",
+    "PipelineConfig",
+    "ProtocolHandler",
+    "ResumableDistributedSampler",
+    "SamplingPipeline",
     "SchedulerFactory",
-    "BaseFactory",
+    "Store",
-    "AutoModel",
+    "StoreFactory",
+    "StrategyFactory",
+    "TrainCallback",
+    "TrainConfig",
+    "Trainer",
+    "filter_by_length",
+    "get_app",
+    "get_rank",
+    "get_world_size",
+    "inject_lora",
+    "only_on_rank",
+    "run_server",
+    "sample",
+    "spawn_parallel_fn",
 ]

astrai/config/model_config.py

@@ -20,6 +20,7 @@ class BaseModelConfig(BaseConfig):
     """Base config with ``model_type`` dispatch and file I/O."""
 
     model_type: Optional[str] = None
+    neftune_alpha: float = 0.0
 
 
 @dataclass
@@ -70,10 +71,12 @@ class EncoderConfig(BaseModelConfig):
     rope_theta: Optional[float] = None
     rope_scaling: Optional[dict] = None
 
+    attn_type: str = "gqa"
     n_heads: Optional[int] = None
     n_kv_heads: Optional[int] = None
     use_qk_norm: Optional[bool] = None
     use_gated_attention: Optional[bool] = None
 
+    ffn_type: str = "mlp"
     pooling_type: Optional[str] = None
     normalize_embeddings: Optional[bool] = None

astrai/config/preprocess_config.py

@@ -96,7 +96,7 @@ class OutputConfig(BaseConfig):
     storage_format: str = "bin"
     max_tokens_per_shard: int = 100_000_000
     dtype: Dict[str, str] = field(default_factory=dict)
-    position_ids_mode: str = "none"
+    position_ids_mode: str = "doc_reset"
 
 
 @dataclass

astrai/config/train_config.py

@@ -47,14 +47,18 @@ class TrainConfig(BaseConfig):
 
     # checkpoint setting
     start_epoch: int = field(default=0, metadata={"help": "Start epoch for training."})
-    start_batch: int = field(
+    start_samples: int = field(
-        default=0, metadata={"help": "Start batch iteration for training."}
+        default=0,
+        metadata={
+            "help": "Start samples count (per rank). Superseded by checkpoint consumed_samples."
+        },
     )
     ckpt_dir: str = field(
         default="./checkpoint", metadata={"help": "Checkpoint directory."}
     )
     ckpt_interval: int = field(
-        default=5000, metadata={"help": "Number of iterations between checkpoints."}
+        default=5000,
+        metadata={"help": "Number of optimizer steps between checkpoints."},
     )
 
     # lora setting
@@ -67,12 +71,8 @@ class TrainConfig(BaseConfig):
     log_dir: str = field(
         default="./checkpoint/logs", metadata={"help": "Directory for metric logs."}
     )
-    log_interval: int = field(
-        default=100,
-        metadata={"help": "Number of batch iterations between metric logs."},
-    )
     metrics: List[str] = field(
-        default_factory=lambda: ["loss", "lr"],
+        default_factory=lambda: ["loss", "lr", "grad_norm"],
         metadata={"help": "Metrics to record during training."},
     )
 

astrai/dataset/__init__.py

@@ -5,10 +5,13 @@ from astrai.dataset.dataset import (
 from astrai.dataset.sampler import ResumableDistributedSampler
 from astrai.dataset.storage import (
     H5Store,
+    JsonlStore,
     MmapStore,
     Store,
     StoreFactory,
     detect_format,
+)
+from astrai.serialization import (
     load_bin,
     load_h5,
     save_bin,
@@ -22,6 +25,7 @@ __all__ = [
     "StoreFactory",
     "H5Store",
     "MmapStore",
+    "JsonlStore",
     "detect_format",
     "save_h5",
     "load_h5",

astrai/dataset/dataset.py

@@ -48,24 +48,26 @@ class BaseDataset(Dataset, ABC):
                 f"Missing: {missing}"
             )
 
-    def load(self, load_path: str, storage_type: Optional[str] = None):
+    def load(self, load_path: str, storage_type: Optional[str] = None, **kwargs):
         """Load dataset from the given path.
 
         Auto-detects the storage format if not specified.
 
         Args:
             load_path: Path to the data directory or file
-            storage_type: Force a specific storage type ("h5", "bin"),
+            storage_type: Force a specific storage type ("h5", "bin", "jsonl"),
                           or None for auto-detection
+            **kwargs: Extra arguments forwarded to the store constructor and
+                      to ``store.load()``.
 
         Raises:
             KeyError: If the loaded storage is missing required keys.
         """
         if storage_type is None:
             storage_type = detect_format(load_path)
-        self.storage = StoreFactory.create(storage_type)
+        self.storage = StoreFactory.create(storage_type, **kwargs)
         self._load_path = load_path
-        self.storage.load(load_path)
+        self.storage.load(load_path, **kwargs)
         self._validate_keys()
 
     @property
@@ -144,6 +146,7 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
         window_size: int,
         stride: Optional[int] = None,
         storage_type: Optional[str] = None,
+        **kwargs,
     ) -> "BaseDataset":
         """Create and load a dataset in one step.
 
@@ -152,7 +155,8 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
             load_path: Path to the data file
             window_size: Window size for data sampling
             stride: Stride between consecutive samples (default: same as window_size)
-            storage_type: Storage type ("h5", "bin") or None for auto-detection
+            storage_type: Storage type ("h5", "bin", "jsonl") or None for auto-detection
+            **kwargs: Extra arguments forwarded to ``dataset.load()``.
 
         Returns:
             Loaded dataset instance
@@ -161,7 +165,7 @@ class DatasetFactory(BaseFactory["BaseDataset"]):
             stride = window_size
 
         dataset = cls.create(train_type, window_size, stride)
-        dataset.load(load_path, storage_type=storage_type)
+        dataset.load(load_path, storage_type=storage_type, **kwargs)
 
         return dataset
 

astrai/dataset/sampler.py

@@ -74,6 +74,7 @@ class ResumableDistributedSampler(Sampler[int]):
 
         self.epoch += 1
         self._indices = None
+        self.iter = self.iter % self.num_samples_per_replica
 
     @property
     def _remaining(self):

astrai/dataset/storage.py

@@ -14,85 +14,31 @@ Key properties:
   - Explicit length: _length = min(total elements across keys), set at load,
                       __len__ returns O(1)
   - Zero-copy mmap:  MmapStore wraps np.memmap(mode="r"), all DataLoader
-                      workers share OS page-cache pages
+                       workers share OS page-cache pages
 """
 
 import bisect
 import glob
 import json
-import os
+import logging
 from abc import ABC, abstractmethod
 from pathlib import Path
 from typing import Dict, List, Union
 
-import h5py
-import numpy as np
 import torch
 from torch import Tensor
 
+from astrai.config.preprocess_config import PipelineConfig
 from astrai.factory import BaseFactory
+from astrai.preprocessing.builder import MaskBuilderFactory
+from astrai.preprocessing.position_id import PositionIdStrategyFactory
+from astrai.serialization import (
+    load_bin,
+    load_h5,
+)
+from astrai.tokenize import AutoTokenizer
 
-
+logger = logging.getLogger(__name__)
-def save_h5(file_path: str, file_name: str, tensor_group: Dict[str, List[Tensor]]):
-    os.makedirs(file_path, exist_ok=True)
-    full_file_path = os.path.join(file_path, f"{file_name}.h5")
-    with h5py.File(full_file_path, "w") as f:
-        for key, tensors in tensor_group.items():
-            grp = f.create_group(key)
-            for idx, tensor in enumerate(tensors):
-                arr = tensor.cpu().numpy()
-                grp.create_dataset(f"data_{idx}", data=arr)
-
-
-def load_h5(file_path: str, share_memory=True) -> Dict[str, List[Tensor]]:
-    tensor_group: Dict[str, List[Tensor]] = {}
-
-    root_path = Path(file_path)
-    h5_files = list(root_path.rglob("*.h5")) + list(root_path.rglob("*.hdf5"))
-
-    for h5_file in h5_files:
-        with h5py.File(h5_file, "r") as f:
-            for key in f.keys():
-                grp = f[key]
-                dsets = []
-                for dset_name in grp.keys():
-                    dset = grp[dset_name]
-                    tensor = torch.from_numpy(dset[:])
-                    if share_memory:
-                        tensor = tensor.share_memory_()
-                    dsets.append(tensor)
-
-                if tensor_group.get(key) is None:
-                    tensor_group[key] = []
-                tensor_group[key].extend(dsets)
-
-    return tensor_group
-
-
-def save_bin(file_path: str, tensor_group: Dict[str, List[Tensor]]):
-    os.makedirs(file_path, exist_ok=True)
-    meta = {}
-    for key, tensors in tensor_group.items():
-        cat = torch.cat(tensors, dim=0)
-        meta[key] = {"shape": list(cat.shape), "dtype": str(cat.dtype).split(".")[-1]}
-        np.asarray(cat.cpu().numpy()).tofile(os.path.join(file_path, f"{key}.bin"))
-    with open(os.path.join(file_path, "meta.json"), "w") as f:
-        json.dump(meta, f)
-
-
-def load_bin(file_path: str) -> Dict[str, List[Tensor]]:
-    with open(os.path.join(file_path, "meta.json"), "r") as f:
-        meta = json.load(f)
-    segments: Dict[str, List[Tensor]] = {}
-    for key, info in meta.items():
-        arr = np.memmap(
-            os.path.join(file_path, f"{key}.bin"),
-            dtype=info["dtype"],
-            mode="r+",
-            shape=tuple(info["shape"]),
-        )
-        segments[key] = [torch.from_numpy(arr)]
-    return segments
 
 
 def detect_format(load_path: str) -> str:
@@ -102,7 +48,7 @@ def detect_format(load_path: str) -> str:
         load_path: Directory or file path
 
     Returns:
-        Format string ("h5" or "bin")
+        Format string ("h5", "bin", or "jsonl")
 
     Raises:
         FileNotFoundError: If no supported data files are found
@@ -112,6 +58,8 @@ def detect_format(load_path: str) -> str:
         suffix = root.suffix.lower()
         if suffix in (".h5", ".hdf5"):
             return "h5"
+        if suffix == ".jsonl":
+            return "jsonl"
         raise ValueError(f"Unsupported file format: {suffix}")
 
     h5_files = [
@@ -128,6 +76,11 @@ def detect_format(load_path: str) -> str:
         ) > 0
         if has_meta:
             return "bin"
+    jsonl_files = [
+        Path(p) for p in glob.glob(str(root / "**" / "*.jsonl"), recursive=True)
+    ]
+    if jsonl_files:
+        return "jsonl"
     raise FileNotFoundError(f"No supported data files found at {load_path}")
 
 
@@ -264,3 +217,96 @@ class MmapStore(Store):
         self._normalize(all_raw)
         for tensors in self._data.values():
             self._mmap_refs.extend(tensors)
+
+
+@StoreFactory.register("jsonl")
+class JsonlStore(Store):
+    """On-the-fly tokenization store for raw JSONL files.
+
+    A JSONL dataset directory contains ``*.jsonl`` files plus a
+    ``dataset_config.json`` file that follows the same schema as
+    :class:`PipelineConfig` with an additional ``tokenizer_path`` field.
+    Records are tokenized when the store is loaded and concatenated into
+    segmented tensors matching the key layout expected by the dataset
+    classes (``sequence``, ``loss_mask``, ``position_ids``, ...).
+    """
+
+    CONFIG_NAME = "dataset_config.json"
+
+    def load(self, path: str):
+        root = Path(path)
+        config_path = root / self.CONFIG_NAME
+        if not config_path.exists():
+            raise FileNotFoundError(
+                f"JSONL dataset config not found: {config_path}. "
+                f"Expected {self.CONFIG_NAME} alongside *.jsonl files."
+            )
+
+        with open(config_path, "r", encoding="utf-8") as f:
+            raw_config = json.load(f)
+
+        tokenizer_path = raw_config.pop("tokenizer_path", None)
+        if tokenizer_path is None:
+            raise ValueError(
+                f"JSONL dataset config must specify 'tokenizer_path': {config_path}"
+            )
+
+        self.config = PipelineConfig.from_dict(raw_config)
+        tokenizer = AutoTokenizer.from_pretrained(tokenizer_path)
+        mask_builder = MaskBuilderFactory.create("sectioned")
+        position_strategy = PositionIdStrategyFactory.create(
+            self.config.output.position_ids_mode
+        )
+
+        raw: Dict[str, List[Tensor]] = {}
+        doc_sequences: List[List[int]] = []
+
+        for jsonl_path in sorted(root.glob("*.jsonl")):
+            with open(jsonl_path, "r", encoding="utf-8") as f:
+                for line in f:
+                    line = line.strip()
+                    if not line:
+                        continue
+                    try:
+                        item = json.loads(line)
+                    except json.JSONDecodeError:
+                        logger.warning(
+                            "Failed to parse JSON line in %s, skipping", jsonl_path
+                        )
+                        continue
+
+                    result = mask_builder.build(item, self.config, tokenizer)
+                    if result is None:
+                        continue
+
+                    result.pop("domain", None)
+                    primary_ids = self._primary_ids(result)
+                    if not primary_ids:
+                        continue
+
+                    doc_sequences.append(primary_ids)
+                    for key, ids in result.items():
+                        if key not in raw:
+                            raw[key] = []
+                        raw[key].append(torch.tensor(ids, dtype=self._infer_dtype(ids)))
+
+        pos_ids = position_strategy.generate(doc_sequences)
+        if pos_ids:
+            raw["position_ids"] = [torch.tensor(pos_ids, dtype=torch.int32)]
+
+        self._normalize(raw)
+
+    @staticmethod
+    def _primary_ids(result: dict) -> List[int]:
+        """Return the first integer list in *result* as the primary id sequence."""
+        for val in result.values():
+            if isinstance(val, list) and val and isinstance(val[0], int):
+                return val
+        return []
+
+    @staticmethod
+    def _infer_dtype(ids: List) -> torch.dtype:
+        """Infer tensor dtype from the first element of a token/value list."""
+        if ids and isinstance(ids[0], float):
+            return torch.float32
+        return torch.int32

astrai/factory.py

@@ -4,7 +4,6 @@ import inspect
 import sys
 from abc import ABC
 from typing import (
-    Any,
     Callable,
     Dict,
     ForwardRef,
@@ -38,7 +37,7 @@ def _resolve_type(
     ns = vars(mod)
 
     if isinstance(arg, ForwardRef):
-        return arg._evaluate(ns, None, frozenset(), recursive_guard=frozenset())
+        return arg._evaluate(ns, None, recursive_guard=frozenset())
 
     return ns.get(name)
 

astrai/inference/__init__.py

@@ -30,10 +30,14 @@ from astrai.inference.api.openai import OpenAIResponseBuilder
 from astrai.inference.core import (
     STOP,
     Allocator,
+    CacheView,
+    ContiguousCache,
+    ContiguousCacheView,
     Executor,
     InferenceScheduler,
     KVCache,
-    KvcacheView,
+    PageCache,
+    PageCacheView,
     PagePool,
     PrefixCache,
     Storage,
@@ -63,8 +67,12 @@ __all__ = [
     "TaskManager",
     "TaskStatus",
     "Allocator",
+    "CacheView",
     "KVCache",
-    "KvcacheView",
+    "ContiguousCache",
+    "ContiguousCacheView",
+    "PageCache",
+    "PageCacheView",
     "PagePool",
     "PrefixCache",
     "Storage",

astrai/inference/core/__init__.py

@@ -2,8 +2,12 @@
 
 from astrai.inference.core.cache import (
     Allocator,
+    CacheView,
+    ContiguousCache,
+    ContiguousCacheView,
     KVCache,
-    KvcacheView,
+    PageCache,
+    PageCacheView,
     PagePool,
     PrefixCache,
     Storage,
@@ -16,8 +20,12 @@ from astrai.inference.core.task import STOP, Task, TaskManager, TaskStatus
 
 __all__ = [
     "Allocator",
+    "CacheView",
     "KVCache",
-    "KvcacheView",
+    "ContiguousCache",
+    "ContiguousCacheView",
+    "PageCache",
+    "PageCacheView",
     "PagePool",
     "PrefixCache",
     "Storage",

astrai/inference/core/cache.py

@@ -1,4 +1,5 @@
 import threading
+from abc import ABC, abstractmethod
 from collections import OrderedDict
 from typing import Callable, Dict, List, Optional, Tuple
 
@@ -62,7 +63,8 @@ class Allocator:
 
     def touch(self, idx: int):
         with self._lock:
-            self._lru.move_to_end(idx)
+            if idx in self._lru:
+                self._lru.move_to_end(idx)
 
 
 class PrefixCache:
@@ -274,7 +276,42 @@ class Storage:
         return k, v
 
 
-class KvcacheView:
+class CacheView(ABC):
+    """Abstract view passed to attention layers for KV-cache I/O."""
+
+    @abstractmethod
+    def write(self, layer_id: int, k: Tensor, v: Tensor): ...
+
+    @abstractmethod
+    def gather(self, layer_id: int) -> Tuple[Tensor, Tensor]: ...
+
+
+class KVCache(ABC):
+    """Abstract KV-cache facade for scheduler/executor."""
+
+    @abstractmethod
+    def task_alloc(self, task_id: str, prompt_ids: List[int]) -> bool: ...
+
+    @abstractmethod
+    def task_free(self, task_id: str): ...
+
+    @abstractmethod
+    def task_extend(self, task_id: str, pos: int) -> bool: ...
+
+    @abstractmethod
+    def bind_tasks(
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> CacheView: ...
+
+    def task_cached(self, task_id: str) -> int:
+        return 0
+
+    def task_record_hashes(
+        self, task_id: str, prompt_ids: List[int], start_logical_page: int = 0
+    ): ...
+
+
+class PageCacheView(CacheView):
     """Bundles Storage + page_table + total_len for attention layers."""
 
     def __init__(self, storage: Storage, page_table: Tensor, total_len: int = 0):
@@ -290,8 +327,8 @@ class KvcacheView:
         return self._storage.gather(layer_id, self._page_table, self._total_len)
 
 
-class KVCache:
+class PageCache(KVCache):
-    """Facade: page management + KV-cache I/O for continuous batching."""
+    """Paged KV-cache with prefix sharing."""
 
     def __init__(
         self,
@@ -361,8 +398,102 @@ class KVCache:
         for i in range(start_logical_page, full_pages):
             self._pool.record(page_table[i], prompt_ids, i)
 
-    def make_table_tensor(self, task_ids: List[str], device: torch.device) -> Tensor:
+    def bind_tasks(
-        return self._table.table_tensor(task_ids, device)
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> PageCacheView:
+        page_table = self._table.table_tensor(task_ids, device)
+        return PageCacheView(self._storage, page_table, total_len)
 
-    def bind(self, page_table: Tensor, total_len: int = 0) -> KvcacheView:
+
-        return KvcacheView(self._storage, page_table, total_len)
+class ContiguousCacheView(CacheView):
+    """Contiguous KV-cache view for attention layers."""
+
+    def __init__(
+        self, cache: "ContiguousCache", batch_indices: Tensor, total_len: int = 0
+    ):
+        self._cache = cache
+        self._batch_indices = batch_indices
+        self._total_len = total_len
+
+    def write(self, layer_id: int, k: Tensor, v: Tensor):
+        seq_len = k.size(1)
+        start_pos = self._total_len - seq_len
+        indices = self._batch_indices
+        self._cache.k[layer_id, indices, start_pos : start_pos + seq_len] = k
+        self._cache.v[layer_id, indices, start_pos : start_pos + seq_len] = v
+        new_len = start_pos + seq_len
+        for s in indices.tolist():
+            cur = self._cache._slot_len.get(s, 0)
+            if new_len > cur:
+                self._cache._slot_len[s] = new_len
+
+    def gather(self, layer_id: int) -> Tuple[Tensor, Tensor]:
+        max_len = max(
+            self._cache._slot_len.get(int(s), 0) for s in self._batch_indices.tolist()
+        )
+        indices = self._batch_indices
+        k = self._cache.k[layer_id, indices, :max_len]
+        v = self._cache.v[layer_id, indices, :max_len]
+        return k, v
+
+
+class ContiguousCache(KVCache):
+    """Contiguous per-slot KV cache (default implementation)."""
+
+    def __init__(
+        self,
+        n_layers: int,
+        max_batch_size: int,
+        max_seq_len: int,
+        n_kv_heads: int,
+        head_dim: int,
+        device: torch.device,
+        dtype: torch.dtype,
+    ):
+        self.max_seq_len = max_seq_len
+        self.k = torch.zeros(
+            n_layers,
+            max_batch_size,
+            max_seq_len,
+            n_kv_heads,
+            head_dim,
+            device=device,
+            dtype=dtype,
+        )
+        self.v = torch.zeros(
+            n_layers,
+            max_batch_size,
+            max_seq_len,
+            n_kv_heads,
+            head_dim,
+            device=device,
+            dtype=dtype,
+        )
+        self._slot_len: Dict[int, int] = {}
+        self._task_slot: Dict[str, int] = {}
+        self._free_slots = list(range(max_batch_size))
+        self._device = device
+
+    def task_alloc(self, task_id: str, prompt_ids: List[int]) -> bool:
+        if not self._free_slots:
+            return False
+        slot = self._free_slots.pop(0)
+        self._task_slot[task_id] = slot
+        self._slot_len[slot] = 0
+        return True
+
+    def task_free(self, task_id: str):
+        slot = self._task_slot.pop(task_id, None)
+        if slot is not None:
+            self._slot_len.pop(slot, None)
+            self._free_slots.append(slot)
+
+    def task_extend(self, task_id: str, pos: int) -> bool:
+        return pos < self.max_seq_len
+
+    def bind_tasks(
+        self, task_ids: List[str], total_len: int, device: torch.device
+    ) -> ContiguousCacheView:
+        slots = [self._task_slot[tid] for tid in task_ids]
+        batch_indices = torch.tensor(slots, dtype=torch.long, device=device)
+        return ContiguousCacheView(self, batch_indices, total_len)

astrai/inference/core/executor.py

@@ -19,13 +19,13 @@ class Executor:
         self,
         model: AutoModel,
         tokenizer: AutoTokenizer,
-        page_cache: KVCache,
+        kv_cache: KVCache,
         device: Optional[str] = None,
         dtype: Optional[torch.dtype] = None,
     ):
         self.model = model
         self.tokenizer = tokenizer
-        self.page_cache = page_cache
+        self.kv_cache = kv_cache
         self.device = device or next(model.parameters()).device
         self.dtype = dtype or next(model.parameters()).dtype
 
@@ -43,7 +43,6 @@ class Executor:
         )
 
         task_ids = [t.task_id for t in tasks]
-        page_tables = self.page_cache.make_table_tensor(task_ids, self.device)
 
         with torch.inference_mode():
             self.model(
@@ -53,7 +52,7 @@ class Executor:
                 )
                 .unsqueeze(0)
                 .expand(batch_sz, -1),
-                paged_cache=self.page_cache.bind(page_tables, total_len=prompt_len),
+                paged_cache=self.kv_cache.bind_tasks(task_ids, prompt_len, self.device),
             )
 
     def execute_decode(self, tasks: List[Task]) -> List[int]:
@@ -72,7 +71,6 @@ class Executor:
         total_len = position_ids.max().item() + 1
 
         task_ids = [t.task_id for t in tasks]
-        page_tables = self.page_cache.make_table_tensor(task_ids, self.device)
 
         temperatures = torch.tensor([t.temperature for t in tasks], device=self.device)
         top_ks = torch.tensor([t.top_k for t in tasks], device=self.device)
@@ -81,7 +79,7 @@ class Executor:
         with torch.inference_mode():
             outputs = self.model(
                 input_ids.unsqueeze(1),
-                paged_cache=self.page_cache.bind(page_tables, total_len=total_len),
+                paged_cache=self.kv_cache.bind_tasks(task_ids, total_len, self.device),
                 position_ids=position_ids.unsqueeze(1),
             )
             logits = outputs["logits"][:, -1, :]

astrai/inference/core/scheduler.py

@@ -4,7 +4,7 @@ from typing import Any, Dict, List, Optional, Tuple
 
 import torch
 
-from astrai.inference.core.cache import KVCache
+from astrai.inference.core.cache import ContiguousCache, KVCache
 from astrai.inference.core.executor import Executor
 from astrai.inference.core.task import STOP, Task, TaskManager, TaskStatus
 from astrai.model.automodel import AutoModel
@@ -14,7 +14,7 @@ logger = logging.getLogger(__name__)
 
 
 class InferenceScheduler:
-    """Four-phase continuous batching loop: cleanup -> refill -> prefill -> decode."""
+    """Continuous batching loop: cleanup -> refill -> prefill -> decode (all groups)."""
 
     def __init__(
         self,
@@ -23,9 +23,9 @@ class InferenceScheduler:
         max_batch_size: int = 16,
         max_seq_len: Optional[int] = None,
         max_prompt_len: int = 2048,
-        page_size: int = 64,
         device: Optional[str] = None,
         dtype: Optional[torch.dtype] = None,
+        cache: Optional[KVCache] = None,
     ):
         config = model.config
 
@@ -41,19 +41,20 @@ class InferenceScheduler:
         self.device = device or next(model.parameters()).device
         self.dtype = dtype or next(model.parameters()).dtype
 
-        n_pages = (
+        head_dim = config.dim // config.n_heads
-            max_batch_size * (self.max_seq_len + page_size) + page_size - 1
-        ) // page_size
 
-        self._page_cache = KVCache(
+        if cache is not None:
-            config.n_layers,
+            self._cache = cache
-            n_pages,
+        else:
-            page_size,
+            self._cache = ContiguousCache(
-            config.n_kv_heads,
+                config.n_layers,
-            config.dim // config.n_heads,
+                max_batch_size,
-            self.device,
+                self.max_seq_len,
-            self.dtype,
+                config.n_kv_heads,
-        )
+                head_dim,
+                self.device,
+                self.dtype,
+            )
 
         self._task_mgr = TaskManager(
             tokenizer=tokenizer,
@@ -65,31 +66,32 @@ class InferenceScheduler:
         self._executor = Executor(
             model=model,
             tokenizer=tokenizer,
-            page_cache=self._page_cache,
+            kv_cache=self._cache,
             device=self.device,
             dtype=self.dtype,
         )
 
-        self._running = False
+        self._stop_event = threading.Event()
-        self._fatal_error: Optional[Exception] = None
+        self._loop_thread: Optional[threading.Thread] = None
 
     def add_task(self, prompt: str, **kwargs) -> str:
         return self._task_mgr.add_task(prompt, **kwargs)
 
     def remove_task(self, task_id: str):
         for task in self._task_mgr.remove_task(task_id):
-            self._page_cache.task_free(task.task_id)
+            self._cache.task_free(task.task_id)
 
     def get_stats(self) -> Dict[str, Any]:
         return self._task_mgr.get_stats()
 
     def _run_generation_loop(self):
         stop_ids = self._task_mgr.tokenizer.stop_ids
+        cache = self._cache
         try:
-            while self._running:
+            while not self._stop_event.is_set():
                 finished = self._task_mgr.remove_finished_tasks(stop_ids)
                 for task in finished:
-                    self._page_cache.task_free(task.task_id)
+                    cache.task_free(task.task_id)
 
                 active = self._task_mgr.get_active_tasks()
                 available = self._task_mgr.max_batch_size - len(active)
@@ -97,7 +99,7 @@ class InferenceScheduler:
                     candidates = self._task_mgr.pull_candidates(available)
                     failed = []
                     for task in candidates:
-                        if self._page_cache.task_alloc(task.task_id, task.prompt_ids):
+                        if cache.task_alloc(task.task_id, task.prompt_ids):
                             self._task_mgr.activate(task)
                         else:
                             failed.append(task)
@@ -112,7 +114,7 @@ class InferenceScheduler:
                     t
                     for t in self._task_mgr.get_active_tasks()
                     if t.output_tokens == 0
-                    and self._page_cache.task_cached(t.task_id) < len(t.prompt_ids)
+                    and cache.task_cached(t.task_id) < len(t.prompt_ids)
                 ]
                 if to_prefill:
                     for t in to_prefill:
@@ -122,36 +124,34 @@ class InferenceScheduler:
                     for t in to_prefill:
                         key = (
                             len(t.prompt_ids),
-                            self._page_cache.task_cached(t.task_id),
+                            cache.task_cached(t.task_id),
                         )
                         groups.setdefault(key, []).append(t)
 
                     for (prompt_len, start_pos), group in groups.items():
                         self._executor.execute_prefill(group, prompt_len, start_pos)
-                        start_logical_page = start_pos // self._page_cache.page_size
+                        start_logical_page = start_pos // getattr(
+                            cache, "page_size", 64
+                        )
                         for t in group:
-                            self._page_cache.task_record_hashes(
+                            cache.task_record_hashes(
-                                t.task_id,
+                                t.task_id, t.prompt_ids, start_logical_page
-                                t.prompt_ids,
-                                start_logical_page=start_logical_page,
                             )
 
                 pos_groups: Dict[int, List[Task]] = {}
                 for t in self._task_mgr.get_active_tasks():
                     pos_groups.setdefault(t.next_pos, []).append(t)
 
-                if pos_groups:
+                for next_pos in sorted(pos_groups.keys()):
-                    best_key = max(pos_groups, key=lambda k: len(pos_groups[k]))
+                    group = sorted(pos_groups[next_pos], key=lambda t: t.task_id)
-                    group = sorted(pos_groups[best_key], key=lambda t: t.task_id)
 
                     valid: List[Task] = []
                     for t in group:
-                        if self._page_cache.task_extend(t.task_id, t.next_pos):
+                        if cache.task_extend(t.task_id, t.next_pos):
                             valid.append(t)
                         else:
                             t.status = TaskStatus.ABORTED
-                            if t.stream_callback:
+                            self._task_mgr.invoke_callback(t.task_id, STOP)
-                                t.stream_callback(STOP)
 
                     if valid:
                         next_tokens = self._executor.execute_decode(valid)
@@ -159,54 +159,44 @@ class InferenceScheduler:
                         for t, ntok in zip(valid, next_tokens):
                             t.output_ids.append(ntok)
                             t.output_tokens += 1
-                            pos = t.input_tokens + t.output_tokens
+                            self._task_mgr.invoke_callback(
-                            extend_ok = self._page_cache.task_extend(t.task_id, pos)
+                                t.task_id,
-                            if t.stream_callback:
+                                self._task_mgr.tokenizer.decode([ntok]),
-                                t.stream_callback(
+                            )
-                                    self._task_mgr.tokenizer.decode([ntok])
-                                )
-                            if not extend_ok:
-                                t.status = TaskStatus.ABORTED
-                                if t.stream_callback:
-                                    t.stream_callback(STOP)
 
                         for t in valid:
                             if t.is_finished(stop_ids):
-                                if t.stream_callback:
+                                self._task_mgr.invoke_callback(t.task_id, STOP)
-                                    t.stream_callback(STOP)
 
         except Exception as e:
-            self._fatal_error = e
+            self._stop_event.set()
-            self._running = False
             logger.error(f"Scheduler loop crashed: {e}", exc_info=True)
             for task in self._task_mgr.get_active_tasks():
-                if task.stream_callback:
+                self._task_mgr.invoke_callback(task.task_id, STOP)
-                    task.stream_callback(STOP)
+                cache.task_free(task.task_id)
-                self._page_cache.task_free(task.task_id)
             for task in self._task_mgr.get_waiting_tasks():
-                if task.stream_callback:
+                self._task_mgr.invoke_callback(task.task_id, STOP)
-                    task.stream_callback(STOP)
             self._task_mgr.clear_queues()
 
     def start(self):
-        if not self._running:
+        if self._loop_thread is not None and self._loop_thread.is_alive():
-            self._running = True
+            return
-            t = threading.Thread(target=self._run_generation_loop, daemon=True)
+        self._stop_event.clear()
-            t.start()
+        t = threading.Thread(target=self._run_generation_loop, daemon=True)
-            self._loop_thread = t
+        t.start()
+        self._loop_thread = t
 
     def stop(self):
-        self._running = False
+        self._stop_event.set()
         self._task_mgr.wake()
-        if hasattr(self, "_loop_thread"):
+        if self._loop_thread is not None:
             self._loop_thread.join(timeout=2.0)
+        self._loop_thread = None
         for task in self._task_mgr.get_active_tasks():
-            if task.stream_callback:
+            self._task_mgr.invoke_callback(task.task_id, STOP)
-                task.stream_callback(STOP)
+            self._cache.task_free(task.task_id)
-            self._page_cache.task_free(task.task_id)
         for task in self._task_mgr.get_waiting_tasks():
-            if task.stream_callback:
+            self._task_mgr.invoke_callback(task.task_id, STOP)
-                task.stream_callback(STOP)
         self._task_mgr.clear_queues()
         if torch.cuda.is_available():
             torch.cuda.empty_cache()

astrai/inference/core/task.py

@@ -33,7 +33,6 @@ class Task:
         temperature: float = 1.0,
         top_p: float = 1.0,
         top_k: int = 50,
-        stream_callback: Optional[Callable[[str], None]] = None,
     ):
         self.task_id = task_id
         self.prompt_ids = prompt_ids
@@ -48,7 +47,6 @@ class Task:
         self.output_tokens: int = 0
         self.arrival_time = time.time()
         self.finish_time: Optional[float] = None
-        self.stream_callback = stream_callback
 
     @property
     def next_pos(self) -> int:
@@ -79,6 +77,7 @@ class TaskManager:
 
         self.waiting_queue: Deque[Task] = deque()
         self.active_tasks: List[Task] = []
+        self._callbacks: Dict[str, Callable[[str], None]] = {}
 
         self._task_event = threading.Event()
         self._lock = threading.Lock()
@@ -117,12 +116,13 @@ class TaskManager:
             temperature=temperature,
             top_p=top_p,
             top_k=top_k,
-            stream_callback=stream_callback,
         )
 
         with self._lock:
             self.waiting_queue.append(task)
             self._total_tasks += 1
+            if stream_callback:
+                self._callbacks[task_id] = stream_callback
 
         self._task_event.set()
         return task_id
@@ -134,8 +134,14 @@ class TaskManager:
                 t for t in self.waiting_queue if t.task_id != task_id
             )
             self.active_tasks = [t for t in self.active_tasks if t.task_id != task_id]
+            self._callbacks.pop(task_id, None)
         return removed_active
 
+    def invoke_callback(self, task_id: str, token: str):
+        cb = self._callbacks.get(task_id)
+        if cb:
+            cb(token)
+
     def get_stats(self) -> Dict[str, Any]:
         return {
             "total_tasks": self._total_tasks,
@@ -204,6 +210,7 @@ class TaskManager:
         with self._lock:
             self.waiting_queue.clear()
             self.active_tasks.clear()
+            self._callbacks.clear()
 
     def wake(self):
         self._task_event.set()

astrai/inference/engine.py

@@ -8,6 +8,7 @@ from typing import Any, AsyncGenerator, Dict, Generator, List, Optional, Tuple,
 import torch
 import torch.nn as nn
 
+from astrai.inference.core.cache import KVCache
 from astrai.inference.core.scheduler import InferenceScheduler
 from astrai.inference.core.task import STOP
 from astrai.tokenize import AutoTokenizer
@@ -101,6 +102,7 @@ class InferenceEngine:
         max_seq_len: Optional[int] = None,
         max_prompt_len: int = 2048,
         page_size: int = 128,
+        cache: Optional[KVCache] = None,
     ):
         self.model = model
         self.tokenizer = tokenizer
@@ -110,7 +112,7 @@ class InferenceEngine:
             max_batch_size=max_batch_size,
             max_seq_len=max_seq_len,
             max_prompt_len=max_prompt_len,
-            page_size=page_size,
+            cache=cache,
         )
 
         self.scheduler.start()

astrai/model/components/attention.py

@@ -6,7 +6,7 @@ import torch.nn.functional as F
 from torch import Tensor
 
 from astrai.factory import BaseFactory
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.components.linear import Linear
 from astrai.model.components.norm import RMSNorm
 from astrai.model.components.rope import apply_rotary_emb
@@ -38,6 +38,7 @@ class GQA(nn.Module):
         norm_eps: float,
         use_gated_attention: bool,
         layer_id: int,
+        n_layers: int = 1,
     ):
         super().__init__()
         assert dim % n_heads == 0
@@ -55,7 +56,7 @@ class GQA(nn.Module):
         self.q_proj = Linear(dim, n_heads * self.head_dim)
         self.k_proj = Linear(dim, n_kv_heads * self.head_dim)
         self.v_proj = Linear(dim, n_kv_heads * self.head_dim)
-        self.o_proj = Linear(dim, dim)
+        self.o_proj = Linear(dim, dim, init_std=0.02 / (2 * n_layers) ** 0.5)
 
         if self.use_qk_norm:
             self.q_norm = RMSNorm(self.head_dim, norm_eps)
@@ -74,7 +75,7 @@ class GQA(nn.Module):
         x: Tensor,
         rotary_emb: Tensor,
         attn_mask: Tensor = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         is_causal = attn_mask is None
 
@@ -121,6 +122,7 @@ class MLA(nn.Module):
         use_qk_norm: bool,
         use_gated_attention: bool,
         layer_id: int,
+        n_layers: int = 1,
     ):
         super().__init__()
         self.dim = dim
@@ -148,7 +150,9 @@ class MLA(nn.Module):
             n_kv_heads * (2 * self.head_dim),
         )
 
-        self.o_proj = Linear(dim, dim, bias=False)
+        self.o_proj = Linear(
+            dim, dim, bias=False, init_std=0.02 / (2 * n_layers) ** 0.5
+        )
 
         if use_gated_attention:
             self.gate = Linear(dim, dim, bias=False)
@@ -158,7 +162,7 @@ class MLA(nn.Module):
         x: Tensor,
         rotary_emb: Tensor,
         attn_mask: Tensor = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         bsz, seq_len, _ = x.size()
         is_causal = attn_mask is None

astrai/model/components/decoder_block.py

@@ -1,51 +1,31 @@
+from dataclasses import asdict
 from typing import Optional
 
 import torch.nn as nn
 from torch import Tensor
 
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.components.attention import AttnFactory
 from astrai.model.components.mlp import FFNFactory
 from astrai.model.components.norm import RMSNorm
 
 
 class DecoderBlock(nn.Module):
-    def __init__(
+    def __init__(self, config, layer_id: int):
-        self,
-        dim: int,
-        n_heads: int,
-        dim_ffn: int,
-        n_kv_heads: int,
-        norm_eps: float,
-        use_qk_norm: bool,
-        use_gated_attention: bool,
-        layer_id: int,
-        attn_type: str = "gqa",
-        ffn_type: str = "mlp",
-        **kwargs,
-    ):
         super().__init__()
-        self.attention = AttnFactory.create(
+        cfg = asdict(config)
-            attn_type,
+        cfg["down_init_std"] = 0.02 / (2 * config.n_layers) ** 0.5
-            dim=dim,
+        self.attention = AttnFactory.create(config.attn_type, **cfg, layer_id=layer_id)
-            n_heads=n_heads,
+        self.input_norm = RMSNorm(config.dim, config.norm_eps)
-            n_kv_heads=n_kv_heads,
+        self.post_attention_norm = RMSNorm(config.dim, config.norm_eps)
-            use_qk_norm=use_qk_norm,
+        self.mlp = FFNFactory.create(config.ffn_type, **cfg)
-            norm_eps=norm_eps,
-            use_gated_attention=use_gated_attention,
-            layer_id=layer_id,
-            **kwargs,
-        )
-        self.input_norm = RMSNorm(dim, norm_eps)
-        self.post_attention_norm = RMSNorm(dim, norm_eps)
-        self.mlp = FFNFactory.create(ffn_type, dim, dim_ffn, **kwargs)
 
     def forward(
         self,
         x: Tensor,
         rotary_emb: Tensor,
         attention_mask: Optional[Tensor] = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
     ) -> Tensor:
         attn_output = self.attention(
             self.input_norm(x),

astrai/model/components/embedding.py

@@ -7,10 +7,13 @@ from torch import Tensor
 
 
 class Embedding(nn.Module):
-    def __init__(self, vocab_size: int, embedding_dim: int):
+    def __init__(self, vocab_size: int, embedding_dim: int, neftune_alpha: float = 0.0):
         super().__init__()
         self.weight = nn.Parameter(torch.empty((vocab_size, embedding_dim)))
-        self.neftune_noise_alpha = 0.0
+        self.neftune_noise_alpha = neftune_alpha
+
+    def set_neftune_alpha(self, alpha: float):
+        self.neftune_noise_alpha = alpha
 
     def reset_parameters(self):
         nn.init.normal_(self.weight, mean=0.0, std=0.02)

astrai/model/components/linear.py

@@ -5,13 +5,16 @@ from torch import Tensor
 
 
 class Linear(nn.Module):
-    def __init__(self, in_dim: int, out_dim: int, bias: bool = False):
+    def __init__(
+        self, in_dim: int, out_dim: int, bias: bool = False, init_std: float = 0.02
+    ):
         super().__init__()
         self.weight = nn.Parameter(torch.empty((out_dim, in_dim)))
         self.bias = nn.Parameter(torch.zeros(out_dim)) if bias else None
+        self.init_std = init_std
 
     def reset_parameters(self):
-        nn.init.kaiming_uniform_(self.weight, a=5**0.5)
+        nn.init.normal_(self.weight, mean=0.0, std=self.init_std)
         if self.bias is not None:
             fan_in, _ = nn.init._calculate_fan_in_and_fan_out(self.weight)
             bound = 1 / (fan_in**0.5)

astrai/model/components/mlp.py

@@ -13,11 +13,11 @@ class FFNFactory(BaseFactory[nn.Module]):
 
 @FFNFactory.register("mlp")
 class MLP(nn.Module):
-    def __init__(self, dim: int, dim_ffn: int):
+    def __init__(self, dim: int, dim_ffn: int, down_init_std: float = 0.02):
         super().__init__()
         self.up = Linear(dim, dim_ffn)
         self.gate = Linear(dim, dim_ffn)
-        self.down = Linear(dim_ffn, dim)
+        self.down = Linear(dim_ffn, dim, init_std=down_init_std)
 
     def forward(self, x: Tensor) -> Tensor:
         gated = self.up(x) * F.silu(self.gate(x))
@@ -35,6 +35,7 @@ class DeepSeekMoE(nn.Module):
         n_shared_experts: int = 1,
         n_activated_experts: int = 2,
         topk_method: str = "greedy",
+        n_layers: int = 1,
     ):
         super().__init__()
         self.dim = dim
@@ -44,12 +45,20 @@ class DeepSeekMoE(nn.Module):
         self.topk_method = topk_method
 
         self.router = Linear(dim, n_routed_experts, bias=False)
+        moe_scale = 1 / max(n_shared_experts, 1) + 1 / n_activated_experts
+        down_init_std = 0.02 / (2 * n_layers * moe_scale) ** 0.5
 
         self.shared_experts = nn.ModuleList(
-            [MLP(dim, dim_ffn) for _ in range(n_shared_experts)]
+            [
+                MLP(dim, dim_ffn, down_init_std=down_init_std)
+                for _ in range(n_shared_experts)
+            ]
         )
         self.routed_experts = nn.ModuleList(
-            [MLP(dim, dim_ffn) for _ in range(n_routed_experts)]
+            [
+                MLP(dim, dim_ffn, down_init_std=down_init_std)
+                for _ in range(n_routed_experts)
+            ]
         )
 
     def forward(self, x: Tensor) -> Tensor:

astrai/model/encoder.py

@@ -23,22 +23,12 @@ class EmbeddingEncoder(AutoModel):
         self.rotary_embedding = RotaryEmbedding(
             rope_dim, config.max_len, rope_base, rope_scaling=config.rope_scaling
         )
-        self.embed_tokens = Embedding(config.vocab_size, config.dim)
+        self.embed_tokens = Embedding(
+            config.vocab_size, config.dim, neftune_alpha=config.neftune_alpha
+        )
 
         self.layers = nn.ModuleList(
-            [
+            [DecoderBlock(config, layer_id) for layer_id in range(config.n_layers)]
-                DecoderBlock(
-                    config.dim,
-                    config.n_heads,
-                    config.dim_ffn,
-                    config.n_kv_heads,
-                    config.norm_eps,
-                    config.use_qk_norm,
-                    config.use_gated_attention,
-                    layer_id,
-                )
-                for layer_id in range(config.n_layers)
-            ]
         )
 
         self.norm = RMSNorm(config.dim, config.norm_eps)

astrai/model/transformer.py

@@ -5,7 +5,7 @@ import torch.nn as nn
 from torch import Tensor
 
 from astrai.config.model_config import AutoRegressiveLMConfig
-from astrai.inference.core.cache import KvcacheView
+from astrai.inference.core.cache import CacheView
 from astrai.model.automodel import AutoModel
 from astrai.model.components.decoder_block import DecoderBlock
 from astrai.model.components.embedding import Embedding
@@ -59,31 +59,12 @@ class AutoRegressiveLM(AutoModel):
         self.rotary_embedding = RotaryEmbedding(
             rope_dim, config.max_len, rope_base, rope_scaling=config.rope_scaling
         )
-        self.embed_tokens = Embedding(config.vocab_size, config.dim)
+        self.embed_tokens = Embedding(
+            config.vocab_size, config.dim, neftune_alpha=config.neftune_alpha
+        )
 
         self.layers = nn.ModuleList(
-            [
+            [DecoderBlock(config, layer_id) for layer_id in range(config.n_layers)]
-                DecoderBlock(
-                    config.dim,
-                    config.n_heads,
-                    config.dim_ffn,
-                    config.n_kv_heads,
-                    config.norm_eps,
-                    config.use_qk_norm,
-                    config.use_gated_attention,
-                    layer_id,
-                    attn_type=config.attn_type,
-                    ffn_type=config.ffn_type,
-                    n_routed_experts=config.n_routed_experts,
-                    n_shared_experts=config.n_shared_experts,
-                    n_activated_experts=config.n_activated_experts,
-                    topk_method=config.topk_method,
-                    kv_lora_rank=config.kv_lora_rank,
-                    qk_nope_head_dim=config.qk_nope_head_dim,
-                    qk_rope_head_dim=config.qk_rope_head_dim,
-                )
-                for layer_id in range(config.n_layers)
-            ]
         )
 
         self.norm = RMSNorm(config.dim, config.norm_eps)
@@ -131,7 +112,7 @@ class AutoRegressiveLM(AutoModel):
         self,
         input_ids: Tensor,
         input_mask: Optional[Tensor] = None,
-        paged_cache: Optional[KvcacheView] = None,
+        paged_cache: Optional[CacheView] = None,
         position_ids: Optional[Tensor] = None,
     ) -> Dict[str, Tensor]:
         assert input_ids.ndim == 2

astrai/parallel/executor.py

@@ -132,6 +132,12 @@ class BaseExecutor:
     def grad_accum_steps(self) -> int:
         return self.gradient_state.num_steps
 
+    def clip_grad_norm(self, model: nn.Module, max_norm: float) -> float:
+        total_norm = torch.nn.utils.clip_grad_norm_(model.parameters(), max_norm)
+        if isinstance(total_norm, torch.Tensor):
+            return total_norm.item()
+        return total_norm
+
 
 class ExecutorFactory(BaseFactory[BaseExecutor]):
     pass
@@ -260,6 +266,14 @@ class FSDPExecutor(BaseExecutor):
             return model.no_sync()
         return contextlib.nullcontext()
 
+    def clip_grad_norm(self, model: nn.Module, max_norm: float) -> float:
+        if isinstance(model, FSDP) and self.use_distributed:
+            total_norm = model.clip_grad_norm_(max_norm)
+            if isinstance(total_norm, torch.Tensor):
+                return total_norm.item()
+            return total_norm
+        return super().clip_grad_norm(model, max_norm)
+
     def unwrap_model(self, model: nn.Module):
         if isinstance(model, FSDP) and self.use_distributed:
             with FSDP.state_dict_type(

astrai/parallel/setup.py

@@ -58,9 +58,11 @@ def setup_parallel(
     os.environ["WORLD_SIZE"] = str(world_size)
     os.environ["LOCAL_DEVICE"] = str(device_id)
 
-    dist.init_process_group(
+    pg_kwargs = dict(rank=rank, world_size=world_size, backend=backend)
-        rank=rank, world_size=world_size, backend=backend, device_id=device_id
+    if backend in ("nccl", "ccl"):
-    )
+        pg_kwargs["device_id"] = device_id
+
+    dist.init_process_group(**pg_kwargs)
 
     try:
         if backend == "nccl" and torch.cuda.is_available():

astrai/preprocessing/packing.py

@@ -6,8 +6,7 @@ pipeline later flattens the result into contiguous tensors.
 """
 
 from abc import ABC, abstractmethod
-from collections import defaultdict
+from typing import Dict, List
-from typing import Dict, List, Tuple
 
 from astrai.factory import BaseFactory
 
@@ -53,6 +52,15 @@ class SimplePacking(PackingStrategy):
 
 @PackingStrategyFactory.register("bfd")
 class BFDPacking(PackingStrategy):
+    """Best-Fit Decreasing bin packing.
+
+    Assigns sequences to bins using a best-fit heuristic (sorted by
+    decreasing length) and concatenates sequences within each bin into
+    a single packed sequence.  Packed sequences are truncated to
+    *max_packed_len* so that each packed bin fits within one context
+    window during training.
+    """
+
     def apply(
         self,
         keys: Dict[str, List[List[int]]],
@@ -62,24 +70,40 @@ class BFDPacking(PackingStrategy):
         sequences = keys.get("sequence", [])
         if not sequences:
             return keys
-        plan = self._plan(sequences, max_packed_len)
+        bins = self._plan(sequences, max_packed_len, truncation_mode)
-        reordered: dict = defaultdict(list)
+
-        for orig_idx, _ in plan:
+        packed: Dict[str, List[List[int]]] = {}
-            for k, vals in keys.items():
+        for k, vals in keys.items():
-                reordered[k].append(
+            packed[k] = [
-                    _truncate(vals[orig_idx], max_packed_len, truncation_mode)
+                _truncate(
+                    self._concat_bin(vals, bin_indices),
+                    max_packed_len,
+                    truncation_mode,
                 )
-        return dict(reordered)
+                for bin_indices in bins
+            ]
+        return packed
 
     @staticmethod
-    def _plan(sequences: List[List[int]], max_packed_len: int) -> List[Tuple[int, int]]:
+    def _concat_bin(vals: List[List[int]], indices: List[int]) -> List[int]:
+        result: List[int] = []
+        for i in indices:
+            result.extend(vals[i])
+        return result
+
+    @staticmethod
+    def _plan(
+        sequences: List[List[int]], max_packed_len: int, truncation_mode: str
+    ) -> List[List[int]]:
         n = len(sequences)
         order = sorted(range(n), key=lambda i: len(sequences[i]), reverse=True)
         bins: List[List[int]] = []
         bin_lengths: List[int] = []
 
         for orig_idx in order:
-            seq_len = min(len(sequences[orig_idx]), max_packed_len)
+            seq_len = len(
+                _truncate(sequences[orig_idx], max_packed_len, truncation_mode)
+            )
             best_bin = None
             best_remain = max_packed_len + 1
             for i, bl in enumerate(bin_lengths):
@@ -94,8 +118,4 @@ class BFDPacking(PackingStrategy):
                 bins.append([orig_idx])
                 bin_lengths.append(seq_len)
 
-        plan: List[Tuple[int, int]] = []
+        return bins
-        for bin_indices in bins:
-            for orig_idx in bin_indices:
-                plan.append((orig_idx, min(len(sequences[orig_idx]), max_packed_len)))
-        return plan

astrai/preprocessing/pipeline.py

@@ -7,6 +7,7 @@ dispatched by configuration keys.
 """
 
 import json
+import logging
 import os
 from collections import defaultdict
 from itertools import chain
@@ -22,6 +23,8 @@ from astrai.preprocessing.position_id import PositionIdStrategyFactory
 from astrai.preprocessing.writer import StoreWriterFactory
 from astrai.tokenize import AutoTokenizer
 
+logger = logging.getLogger(__name__)
+
 _STR_TO_DTYPE: dict[str, torch.dtype] = {
     "bool": torch.bool,
     "uint8": torch.uint8,
@@ -88,7 +91,13 @@ class Pipeline:
             if pp.max_items and count >= pp.max_items:
                 break
 
-            result = self.transform(item)
+            try:
+                result = self.transform(item)
+            except Exception:
+                logger.warning(
+                    "Failed to process item #%d, skipping", count + 1, exc_info=True
+                )
+                continue
             if result is None:
                 continue
 
@@ -105,7 +114,7 @@ class Pipeline:
                 continue
 
             bucket = domains[domain]
-            self._align_bucket(bucket, result, ids, is_multi)
+            self._align_bucket(bucket, result, ids)
             for key, val in result.items():
                 bucket[key].append(val)
 
@@ -130,16 +139,12 @@ class Pipeline:
         return []
 
     @staticmethod
-    def _align_bucket(bucket: dict, result: dict, ids: list, is_multi: bool):
+    def _align_bucket(bucket: dict, result: dict, ids: list):
         """Pad previously-accumulated keys that are missing from *result*."""
         for key in list(bucket.keys()):
             if key in result:
                 continue
-            if is_multi:
+            bucket[key].append([0] * len(ids))
-                pad = bucket[key][-1] if bucket[key] else [1] * len(ids)
-                bucket[key].append(pad)
-            else:
-                bucket[key].append([1] * len(ids))
 
     def _iter_items(self):
         for path in self.paths:
@@ -155,6 +160,12 @@ class Pipeline:
             idx = shard_idx[domain]
 
             pp = self.config.preprocessing
+            original_sequences = keys.get("sequence", [])
+            mode = self.config.output.position_ids_mode
+
+            if mode == "doc_reset" and original_sequences:
+                keys["position_ids"] = [list(range(len(s))) for s in original_sequences]
+
             keys = self._packer.apply(dict(keys), pp.max_packed_len, pp.truncation_mode)
 
             tensors: Dict[str, List[torch.Tensor]] = {}
@@ -166,9 +177,10 @@ class Pipeline:
                     torch.tensor(list(chain.from_iterable(ids_list)), dtype=dt)
                 ]
 
-            pos_ids = self._position_id.generate(keys.get("sequence", []))
+            if mode == "continuous" and original_sequences:
-            if pos_ids:
+                pos_ids = self._position_id.generate(keys.get("sequence", []))
-                tensors["position_ids"] = [torch.tensor(pos_ids, dtype=torch.int32)]
+                if pos_ids:
+                    tensors["position_ids"] = [torch.tensor(pos_ids, dtype=torch.int32)]
 
             self._writer.save(self.output_dir, domain, idx, tensors)
             shard_idx[domain] = idx + 1

astrai/preprocessing/writer.py

@@ -6,14 +6,18 @@ List[Tensor]}`` dict and delegates the write to the writer selected
 by ``output.storage_format``.
 """
 
+import logging
 import os
+import shutil
 from abc import ABC, abstractmethod
 from typing import Dict, List
 
 import torch
 
-from astrai.dataset.storage import save_bin, save_h5
 from astrai.factory import BaseFactory
+from astrai.serialization import save_bin, save_h5
+
+logger = logging.getLogger(__name__)
 
 
 class StoreWriter(ABC):
@@ -37,11 +41,35 @@ class StoreWriterFactory(BaseFactory["StoreWriter"]):
 class BinWriter(StoreWriter):
     def save(self, output_dir, domain, shard_idx, tensors):
         shard_path = os.path.join(output_dir, domain, f"shard_{shard_idx:04d}")
-        save_bin(shard_path, tensors)
+        try:
+            save_bin(shard_path, tensors)
+        except Exception:
+            if os.path.exists(shard_path):
+                shutil.rmtree(shard_path, ignore_errors=True)
+            logger.error(
+                "Failed to write shard %s/%s_%04d, cleaned up partial output",
+                domain,
+                "shard",
+                shard_idx,
+                exc_info=True,
+            )
+            raise
 
 
 @StoreWriterFactory.register("h5")
 class H5Writer(StoreWriter):
     def save(self, output_dir, domain, shard_idx, tensors):
         chunk_dir = os.path.join(output_dir, domain)
-        save_h5(chunk_dir, f"data_{shard_idx:04d}", tensors)
+        file_path = os.path.join(chunk_dir, f"data_{shard_idx:04d}.h5")
+        try:
+            save_h5(chunk_dir, f"data_{shard_idx:04d}", tensors)
+        except Exception:
+            if os.path.exists(file_path):
+                os.remove(file_path)
+            logger.error(
+                "Failed to write shard %s/data_%04d.h5, cleaned up partial output",
+                domain,
+                shard_idx,
+                exc_info=True,
+            )
+            raise

astrai/serialization/__init__.py

@@ -0,0 +1,43 @@
+"""Serialization utilities for models and datasets.
+
+This package re-exports checkpoint helpers and dataset storage helpers so
+that existing imports from ``astrai.serialization`` continue to work.
+"""
+
+from astrai.serialization.checkpoint import (
+    Checkpoint,
+    load_json,
+    load_model_config,
+    load_model_weights,
+    load_safetensors,
+    load_state_dict,
+    load_torch,
+    save_json,
+    save_model,
+    save_safetensors,
+    save_torch,
+)
+from astrai.serialization.dataset import (
+    load_bin,
+    load_h5,
+    save_bin,
+    save_h5,
+)
+
+__all__ = [
+    "Checkpoint",
+    "load_json",
+    "load_model_config",
+    "load_model_weights",
+    "load_safetensors",
+    "load_state_dict",
+    "load_torch",
+    "save_json",
+    "save_model",
+    "save_safetensors",
+    "save_torch",
+    "load_bin",
+    "load_h5",
+    "save_bin",
+    "save_h5",
+]

astrai/serialization/checkpoint.py

@@ -1,5 +1,8 @@
+"""Model checkpoint serialization helpers."""
+
 import io
 import json
+import os
 import time
 from dataclasses import dataclass, field
 from pathlib import Path
@@ -136,7 +139,7 @@ def load_state_dict(path: Union[str, Path], broadcast: bool = False) -> dict:
 class Checkpoint:
     state_dict: Dict[str, Any] = field(default_factory=dict)
     epoch: int = 0
-    iteration: int = 0
+    consumed_samples: int = 0
     extra: Dict[str, Any] = field(default_factory=dict)
     meta: Dict[str, Any] = field(default_factory=dict)
     config: Dict[str, Any] = field(default_factory=dict)
@@ -150,7 +153,7 @@ class Checkpoint:
 
         meta = {
             "epoch": self.epoch,
-            "iteration": self.iteration,
+            "consumed_samples": self.consumed_samples,
             "timestamp": time.strftime("%Y-%m-%dT%H:%M:%S"),
             **self.meta,
         }
@@ -176,7 +179,7 @@ class Checkpoint:
         return cls(
             state_dict=state_dict,
             epoch=meta.get("epoch", 0),
-            iteration=meta.get("iteration", 0),
+            consumed_samples=meta.get("consumed_samples", 0),
             extra=extra,
             config=config,
         )

astrai/serialization/dataset.py

@@ -0,0 +1,73 @@
+"""Dataset storage serialization helpers (HDF5 / memory-mapped binary)."""
+
+import json
+import os
+from pathlib import Path
+from typing import Dict, List
+
+import h5py
+import numpy as np
+import torch
+from torch import Tensor
+
+
+def save_h5(file_path: str, file_name: str, tensor_group: Dict[str, List[Tensor]]):
+    os.makedirs(file_path, exist_ok=True)
+    full_file_path = os.path.join(file_path, f"{file_name}.h5")
+    with h5py.File(full_file_path, "w") as f:
+        for key, tensors in tensor_group.items():
+            grp = f.create_group(key)
+            for idx, tensor in enumerate(tensors):
+                arr = tensor.cpu().numpy()
+                grp.create_dataset(f"data_{idx}", data=arr)
+
+
+def load_h5(file_path: str, share_memory=True) -> Dict[str, List[Tensor]]:
+    tensor_group: Dict[str, List[Tensor]] = {}
+
+    root_path = Path(file_path)
+    h5_files = list(root_path.rglob("*.h5")) + list(root_path.rglob("*.hdf5"))
+
+    for h5_file in h5_files:
+        with h5py.File(h5_file, "r") as f:
+            for key in f.keys():
+                grp = f[key]
+                dsets = []
+                for dset_name in grp.keys():
+                    dset = grp[dset_name]
+                    tensor = torch.from_numpy(dset[:])
+                    if share_memory:
+                        tensor = tensor.share_memory_()
+                    dsets.append(tensor)
+
+                if tensor_group.get(key) is None:
+                    tensor_group[key] = []
+                tensor_group[key].extend(dsets)
+
+    return tensor_group
+
+
+def save_bin(file_path: str, tensor_group: Dict[str, List[Tensor]]):
+    os.makedirs(file_path, exist_ok=True)
+    meta = {}
+    for key, tensors in tensor_group.items():
+        cat = torch.cat(tensors, dim=0)
+        meta[key] = {"shape": list(cat.shape), "dtype": str(cat.dtype).split(".")[-1]}
+        np.asarray(cat.cpu().numpy()).tofile(os.path.join(file_path, f"{key}.bin"))
+    with open(os.path.join(file_path, "meta.json"), "w") as f:
+        json.dump(meta, f)
+
+
+def load_bin(file_path: str) -> Dict[str, List[Tensor]]:
+    with open(os.path.join(file_path, "meta.json"), "r") as f:
+        meta = json.load(f)
+    segments: Dict[str, List[Tensor]] = {}
+    for key, info in meta.items():
+        arr = np.memmap(
+            os.path.join(file_path, f"{key}.bin"),
+            dtype=info["dtype"],
+            mode="r+",
+            shape=tuple(info["shape"]),
+        )
+        segments[key] = [torch.from_numpy(arr)]
+    return segments

astrai/trainer/__init__.py

@@ -1,4 +1,3 @@
-from astrai.trainer.optim import Muon
 from astrai.trainer.schedule import BaseScheduler, SchedulerFactory
 from astrai.trainer.strategy import BaseStrategy, StrategyFactory
 from astrai.trainer.train_callback import (
@@ -10,8 +9,6 @@ from astrai.trainer.trainer import Trainer
 __all__ = [
     # Main trainer
     "Trainer",
-    # Optimizer
-    "Muon",
     # Strategy factory
     "StrategyFactory",
     "BaseStrategy",

astrai/trainer/metric_util.py

@@ -1,42 +1,25 @@
-from typing import Any, Callable, Dict
+from typing import Dict
 
 import torch
 import torch.nn as nn
 
 
-def _grad_stat(
+def grad_norm(model: nn.Module, per_param: bool = False) -> float | Dict[str, float]:
-    model: nn.Module, fn: Callable[[torch.Tensor], Any], default: Any
+    grads = [p.grad.detach() for p in model.parameters() if p.grad is not None]
-) -> dict:
+    if not grads:
-    results = {}
+        return 0.0
-    for name, param in model.named_parameters():
-        results[name] = default
-        if param.grad is not None:
-            results[name] = fn(param.grad.data)
-    return results
 
-
+    total_sq = torch.stack([g.pow(2).sum() for g in grads]).sum()
-def grad_norm(model: nn.Module, norm_type: int = 2) -> Dict[str, float]:
+    if per_param:
-    return _grad_stat(model, lambda g: g.norm(norm_type).item(), 0.0)
+        norms = {}
-
+        for name, param in model.named_parameters():
-
+            if param.grad is not None:
-def grad_std(model: nn.Module) -> Dict[str, float]:
+                norms[name] = param.grad.norm(2).item()
-    return _grad_stat(model, lambda g: g.std().item(), 0.0)
+            else:
-
+                norms[name] = 0.0
-
+        norms["total"] = total_sq.sqrt().item()
-def grad_max(model: nn.Module) -> Dict[str, float]:
+        return norms
-    return _grad_stat(model, lambda g: g.max().item(), -float("inf"))
+    return total_sq.sqrt().item()
-
-
-def grad_min(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.min().item(), float("inf"))
-
-
-def grad_mean(model: nn.Module) -> Dict[str, float]:
-    return _grad_stat(model, lambda g: g.mean().item(), 0.0)
-
-
-def grad_nan_num(model: nn.Module) -> Dict[str, int]:
-    return _grad_stat(model, lambda g: g.isnan().sum().item(), 0)
 
 
 def ctx_get_loss(ctx):
@@ -52,24 +35,4 @@ def ctx_get_val_loss(ctx):
 
 
 def ctx_get_grad_norm(ctx):
-    return grad_norm(ctx.model)
+    return ctx.grad_norm
-
-
-def ctx_get_grad_std(ctx):
-    return grad_std(ctx.model)
-
-
-def ctx_get_grad_max(ctx):
-    return grad_max(ctx.model)
-
-
-def ctx_get_grad_min(ctx):
-    return grad_min(ctx.model)
-
-
-def ctx_get_grad_mean(ctx):
-    return grad_mean(ctx.model)
-
-
-def ctx_get_grad_nan_num(ctx):
-    return grad_nan_num(ctx.model)

astrai/trainer/optim.py

@@ -1,143 +0,0 @@
-import torch
-from torch.optim import Optimizer
-
-
-def _zeropower_via_newtonschulz(G: torch.Tensor, steps: int = 5):
-    assert G.ndim == 2
-    X = G
-    scale = max(1, G.size(0) / G.size(1)) ** 0.5
-    X = X / (X.norm() + 1e-7) * scale
-    if steps == 0:
-        return X
-    a, b, c = (3.4445, -4.7750, 2.0315)
-    for _ in range(steps):
-        A = X @ X.T
-        B = A @ X
-        X = a * X + b * B + c * (A @ B)
-    return X
-
-
-class Muon(Optimizer):
-    def __init__(
-        self,
-        params,
-        lr: float = 2e-3,
-        momentum: float = 0.95,
-        weight_decay: float = 0.0,
-        nesterov: bool = True,
-        ns_steps: int = 5,
-        adamw_lr: float = None,
-        adamw_betas: tuple = (0.9, 0.95),
-        adamw_eps: float = 1e-8,
-        adamw_wd: float = 0.0,
-    ):
-        defaults = dict(
-            lr=lr,
-            momentum=momentum,
-            weight_decay=weight_decay,
-            nesterov=nesterov,
-            ns_steps=ns_steps,
-            adamw_lr=adamw_lr if adamw_lr is not None else lr * 0.1,
-            adamw_betas=adamw_betas,
-            adamw_eps=adamw_eps,
-            adamw_wd=adamw_wd,
-        )
-        super().__init__(params, defaults)
-
-    @torch.no_grad()
-    def step(self, closure=None):
-        loss = None
-        if closure is not None:
-            with torch.enable_grad():
-                loss = closure()
-
-        for group in self.param_groups:
-            params_2d, params_1d = [], []
-            grads_2d, grads_1d = [], []
-
-            for p in group["params"]:
-                if p.grad is None:
-                    continue
-                if p.grad.is_sparse:
-                    raise RuntimeError("Muon does not support sparse gradients")
-                if p.ndim >= 2:
-                    params_2d.append(p)
-                    grads_2d.append(p.grad)
-                else:
-                    params_1d.append(p)
-                    grads_1d.append(p.grad)
-
-            if params_2d:
-                self._muon_update_foreach(params_2d, grads_2d, group)
-            if params_1d:
-                self._adamw_update_foreach(params_1d, grads_1d, group)
-
-        return loss
-
-    def _muon_update_foreach(self, params_2d, grads_2d, group):
-        lr = group["lr"]
-        momentum = group["momentum"]
-        wd = group["weight_decay"]
-        nesterov = group["nesterov"]
-        ns_steps = group["ns_steps"]
-
-        if wd != 0:
-            torch._foreach_mul_(params_2d, 1 - lr * wd)
-
-        if nesterov:
-            grads_2d = torch._foreach_add(grads_2d, params_2d, alpha=wd)
-
-        bufs = []
-        for p, grad in zip(params_2d, grads_2d):
-            state = self.state[p]
-            if "momentum_buffer" not in state:
-                state["momentum_buffer"] = torch.zeros_like(grad)
-            bufs.append(state["momentum_buffer"])
-
-        torch._foreach_lerp_(bufs, grads_2d, 1 - momentum)
-
-        for p, buf in zip(params_2d, bufs):
-            update = _zeropower_via_newtonschulz(buf, steps=ns_steps)
-            scale = max(1, p.size(0) / p.size(1)) ** 0.5
-            p.add_(update, alpha=-lr * scale)
-
-    def _adamw_update_foreach(self, params_1d, grads_1d, group):
-        lr = group["adamw_lr"]
-        betas = group["adamw_betas"]
-        eps = group["adamw_eps"]
-        wd = group["adamw_wd"]
-
-        steps: list[int] = []
-        exp_avgs, exp_avg_sqs = [], []
-        has_state = []
-        for p in params_1d:
-            state = self.state[p]
-            if not state:
-                state["step"] = 0
-                state["exp_avg"] = torch.zeros_like(p)
-                state["exp_avg_sq"] = torch.zeros_like(p)
-                has_state.append(False)
-            else:
-                has_state.append(True)
-            state["step"] += 1
-            steps.append(state["step"])
-            exp_avgs.append(state["exp_avg"])
-            exp_avg_sqs.append(state["exp_avg_sq"])
-
-        beta1, beta2 = betas
-
-        torch._foreach_lerp_(exp_avgs, grads_1d, 1 - beta1)
-        grads_sq = torch._foreach_mul(grads_1d, grads_1d)
-        torch._foreach_lerp_(exp_avg_sqs, grads_sq, 1 - beta2)
-
-        bias_correction1 = [1 - beta1**s for s in steps]
-        bias_correction2 = [1 - beta2**s for s in steps]
-
-        if wd != 0:
-            torch._foreach_mul_(params_1d, 1 - lr * wd)
-
-        exp_avg_corrected = torch._foreach_div(exp_avgs, bias_correction1)
-        denom = torch._foreach_div(exp_avg_sqs, bias_correction2)
-        denom = torch._foreach_sqrt(denom)
-        torch._foreach_add_(denom, eps)
-        torch._foreach_addcdiv_(params_1d, exp_avg_corrected, denom, value=-lr)

astrai/trainer/schedule.py

@@ -53,7 +53,7 @@ class CosineScheduler(BaseScheduler):
         optimizer,
         warmup_steps: int,
         lr_decay_steps: int,
-        min_rate: float = 0.05,
+        min_rate: float = 0.01,
         last_epoch: int = -1,
     ):
         self.warmup_steps = warmup_steps
@@ -65,11 +65,15 @@ class CosineScheduler(BaseScheduler):
     def get_lr(self) -> List[float]:
         # warmup
         if self.last_epoch < self.warmup_steps:
-            warmup_factor = max(self.min_rate, self.last_epoch / self.warmup_steps)
+            warmup_factor = max(
+                self.min_rate, self.last_epoch / max(self.warmup_steps, 1)
+            )
             return [base_lr * warmup_factor for base_lr in self.base_lrs]
 
         # cosine decay
-        decay_progress = (self.last_epoch - self.warmup_steps) / self.lr_decay_steps
+        decay_progress = (self.last_epoch - self.warmup_steps) / max(
+            self.lr_decay_steps, 1
+        )
         decay_progress = min(decay_progress, 1.0)
         cosine_decay = 0.5 * (1.0 + math.cos(math.pi * decay_progress))
         decay_factor = max(self.min_rate, cosine_decay)
@@ -104,7 +108,7 @@ class SGDRScheduler(BaseScheduler):
         optimizer,
         warmup_steps: int,
         cycle_length: int,
-        min_rate: float = 0.05,
+        min_rate: float = 0.01,
         t_mult: int = 2,
         last_epoch: int = -1,
     ):
@@ -118,7 +122,9 @@ class SGDRScheduler(BaseScheduler):
     def get_lr(self):
         # warmup
         if self.last_epoch < self.warmup_steps:
-            warmup_factor = max(self.min_rate, self.last_epoch / self.warmup_steps)
+            warmup_factor = max(
+                self.min_rate, self.last_epoch / max(self.warmup_steps, 1)
+            )
             return [base_lr * warmup_factor for base_lr in self.base_lrs]
 
         # SGDR
@@ -164,3 +170,66 @@ class SGDRScheduler(BaseScheduler):
         self.min_rate = state_dict.pop("min_rate")
         self.t_mult = state_dict.pop("t_mult")
         super().load_state_dict(state_dict)
+
+
+@SchedulerFactory.register("wsd")
+class WSDScheduler(BaseScheduler):
+    """WSD (Warmup-Stable-Decay) scheduler with sqrt cooldown.
+
+    warmup_steps:  linear warmup from min_rate to 1.0
+    stable_steps:   constant at base_lr
+    decay_steps:    sqrt decay from base_lr to min_rate
+    min_rate:       minimum lr as fraction of base_lr (default 0.0)
+    """
+
+    def __init__(
+        self,
+        optimizer,
+        warmup_steps: int,
+        stable_steps: int,
+        decay_steps: int,
+        min_rate: float = 0.01,
+        last_epoch: int = -1,
+    ):
+        self.warmup_steps = warmup_steps
+        self.stable_steps = stable_steps
+        self.decay_steps = decay_steps
+        self.min_rate = min_rate
+        self.total_steps = warmup_steps + stable_steps + decay_steps
+        super().__init__(optimizer, last_epoch)
+
+    def get_lr(self) -> List[float]:
+        if self.last_epoch < self.warmup_steps:
+            factor = max(self.min_rate, self.last_epoch / max(self.warmup_steps, 1))
+            return [base_lr * factor for base_lr in self.base_lrs]
+
+        offset = self.last_epoch - self.warmup_steps
+
+        if offset < self.stable_steps:
+            return list(self.base_lrs)
+
+        decay_ratio = (offset - self.stable_steps) / max(self.decay_steps, 1)
+        decay_ratio = min(decay_ratio, 1.0)
+        factor = (1.0 - self.min_rate) * (1.0 - decay_ratio) ** 2 + self.min_rate
+        return [base_lr * factor for base_lr in self.base_lrs]
+
+    def state_dict(self):
+        state = super().state_dict()
+        state.update(
+            {
+                "warmup_steps": self.warmup_steps,
+                "stable_steps": self.stable_steps,
+                "decay_steps": self.decay_steps,
+                "min_rate": self.min_rate,
+                "total_steps": self.total_steps,
+            }
+        )
+        return state
+
+    def load_state_dict(self, state_dict):
+        self.warmup_steps = state_dict.pop("warmup_steps")
+        self.stable_steps = state_dict.pop("stable_steps")
+        self.decay_steps = state_dict.pop("decay_steps")
+        self.min_rate = state_dict.pop("min_rate")
+        self.total_steps = state_dict.pop("total_steps")
+        super().load_state_dict(state_dict)

astrai/trainer/strategy.py

@@ -196,7 +196,7 @@ class SFTStrategy(BaseStrategy):
 
         ignore_index = -100
         input_mask = make_doc_boundary_mask(position_ids)
-        target_ids = target_ids.masked_fill(loss_mask == 0, ignore_index)
+        target_ids = target_ids.masked_fill(~loss_mask, ignore_index)
         logits = self.model(
             input_ids=input_ids, position_ids=position_ids, input_mask=input_mask
         )["logits"]

astrai/trainer/train_callback.py

@@ -9,7 +9,6 @@ from typing import IO, Callable, List, Optional, Protocol, runtime_checkable
 import torch
 import torch.distributed as dist
 import torch.nn as nn
-from torch.nn.utils import clip_grad_norm_
 from torch.utils.checkpoint import checkpoint as torch_checkpoint
 from tqdm import tqdm
 
@@ -18,12 +17,7 @@ from astrai.parallel import only_on_rank
 from astrai.parallel.setup import get_current_device, get_rank
 from astrai.serialization import Checkpoint
 from astrai.trainer.metric_util import (
-    ctx_get_grad_max,
-    ctx_get_grad_mean,
-    ctx_get_grad_min,
-    ctx_get_grad_nan_num,
     ctx_get_grad_norm,
-    ctx_get_grad_std,
     ctx_get_loss,
     ctx_get_lr,
     ctx_get_val_loss,
@@ -86,7 +80,9 @@ class GradientClippingCallback(TrainCallback):
         self.max_grad_norm = max_grad_norm
 
     def on_optimizer_step(self, context: TrainContext):
-        clip_grad_norm_(context.model.parameters(), self.max_grad_norm)
+        context.grad_norm = context.executor.clip_grad_norm(
+            context.model, self.max_grad_norm
+        )
 
 
 @CallbackFactory.register("gradient_checkpointing")
@@ -143,34 +139,35 @@ class CheckpointCallback(TrainCallback):
         self.interval = interval
         self.weight_only = weight_only
         self.save_extra_fn = save_extra_fn or CheckpointCallback.save_extra
-        self.last_ckpt_iter = 0
+        self.last_ckpt_step = 0
 
     def _save_checkpoint(self, context: TrainContext):
         state_dict = context.executor.unwrap_model(context.model)
-        self.last_ckpt_iter = context.iteration
+        self.last_ckpt_step = context.optimizer_step
 
         if get_rank() == 0:
             save_path = os.path.join(
-                self.save_dir, f"epoch_{context.epoch}_iter_{context.iteration}"
+                self.save_dir,
+                f"epoch_{context.epoch}_step_{context.optimizer_step}",
             )
             extra = self.save_extra_fn(context)
             meta = context.config.to_dict()
             context.checkpoint = Checkpoint(
                 state_dict=state_dict,
                 epoch=context.epoch,
-                iteration=context.iteration,
+                consumed_samples=context.consumed_samples,
+                config=context.model_config,
                 extra=extra,
                 meta=meta,
-                config=context.model_config,
             )
             context.checkpoint.save(save_path)
 
     def on_batch_end(self, context: TrainContext):
-        if context.iteration - self.last_ckpt_iter >= self.interval:
+        if context.optimizer_step - self.last_ckpt_step >= self.interval:
             self._save_checkpoint(context)
 
     def on_train_end(self, context: TrainContext):
-        if context.iteration != self.last_ckpt_iter:
+        if context.optimizer_step != self.last_ckpt_step:
             self._save_checkpoint(context)
 
     def on_error(self, context: TrainContext):
@@ -202,23 +199,27 @@ class ProgressBarCallback(TrainCallback):
 
     @only_on_rank(0)
     def on_epoch_begin(self, context: TrainContext):
+        total_steps = len(context.dataloader) // context.executor.grad_accum_steps
         self.progress_bar = tqdm(
-            context.dataloader,
+            total=total_steps,
             desc=f"Epoch {context.epoch + 1}/{self.num_epoch}",
             dynamic_ncols=True,
             file=self.file or sys.stdout,
         )
 
     @only_on_rank(0)
-    def on_batch_end(self, context: TrainContext):
+    def on_optimizer_step(self, context: TrainContext):
+        self.progress_bar.update(1)
         postfix = {
+            "step": context.optimizer_step,
             "loss": f"{context.loss:.4f}",
             "lr": f"{context.optimizer.param_groups[-1]['lr']:.2e}",
         }
+        if context.grad_norm is not None:
+            postfix["grad_norm"] = f"{context.grad_norm:.2f}"
         if context.val_loss is not None:
             postfix["val_loss"] = f"{context.val_loss:.4f}"
         self.progress_bar.set_postfix(postfix)
-        self.progress_bar.update(1)
 
     @only_on_rank(0)
     def on_epoch_end(self, context: TrainContext):
@@ -227,19 +228,20 @@ class ProgressBarCallback(TrainCallback):
             self.progress_bar.close()
 
 
-@CallbackFactory.register("metric_logger")
+@CallbackFactory.register("metric")
-class MetricLoggerCallback(TrainCallback):
+class MetricCallback(TrainCallback):
     def __init__(
         self,
         log_dir: str,
         save_interval: int,
-        log_interval: int = 10,
         metrics: List[str] = None,
+        val_step: int = 0,
     ):
-        self.last_log_iter = 0
+        self.last_log_flush_step = 0
         self.save_interval = save_interval
-        self.log_interval = log_interval
         self.metrics = metrics or ["loss", "lr"]
+        self.val_step = val_step
+        self._next_val_step = 0
 
         self.log_dir = Path(log_dir) if log_dir else Path.cwd() / "logs"
         self.log_dir.mkdir(parents=True, exist_ok=True)
@@ -251,58 +253,28 @@ class MetricLoggerCallback(TrainCallback):
             "lr": ctx_get_lr,
             "val_loss": ctx_get_val_loss,
             "grad_norm": ctx_get_grad_norm,
-            "grad_std": ctx_get_grad_std,
-            "grad_max": ctx_get_grad_max,
-            "grad_min": ctx_get_grad_min,
-            "grad_mean": ctx_get_grad_mean,
-            "grad_nan_num": ctx_get_grad_nan_num,
         }
 
-    def _get_log_data(self, context: TrainContext):
+    def _metrics(self, context: TrainContext, names):
-        data = {
+        return {
+            m: self._metric_funcs[m](context)
+            for m in names
+            if self._metric_funcs[m](context) is not None
+        }
+
+    @only_on_rank(0)
+    def _append(self, event_type: str, context: TrainContext, **extra):
+        entry = {
+            "type": event_type,
             "timestamp": time.strftime("%Y-%m-%dT%H:%M:%S"),
             "epoch": context.epoch,
-            "iter": context.iteration,
+            "step": context.optimizer_step,
+            "consumed_samples": context.consumed_samples,
+            **extra,
         }
-        for m in self.metrics:
+        self.log_cache.append(entry)
-            val = self._metric_funcs[m](context)
-            if val is not None:
-                data[m] = val
-        return data
 
-    @only_on_rank(0)
+    def _run_validation(self, context: TrainContext) -> float:
-    def _add_log(self, log_data):
-        self.log_cache.append(log_data)
-
-    @only_on_rank(0)
-    def _save_log(self, epoch, iter):
-        log_file = self.log_dir / f"epoch_{epoch}_iter_{iter}_metric.jsonl"
-        log_file.parent.mkdir(parents=True, exist_ok=True)
-
-        with open(log_file, "w") as f:
-            for log in self.log_cache:
-                f.write(json.dumps(log) + "\n")
-
-    def on_batch_end(self, context):
-        if context.iteration % self.log_interval == 0:
-            log_data = self._get_log_data(context)
-            self._add_log(log_data)
-
-        if context.iteration - self.last_log_iter >= self.save_interval:
-            self._save_log(context.epoch, context.iteration)
-            self.last_log_iter = context.iteration
-
-    def on_train_end(self, context):
-        if context.iteration != self.last_log_iter:
-            self._save_log(context.epoch, context.iteration)
-
-    def on_error(self, context):
-        self._save_log(context.epoch, context.iteration)
-
-
-@CallbackFactory.register("validation")
-class ValidationCallback(TrainCallback):
-    def _run_validation(self, context: TrainContext):
         context.model.eval()
 
         total_loss = 0.0
@@ -314,27 +286,49 @@ class ValidationCallback(TrainCallback):
                 total_loss += loss.item()
                 num_batches += 1
 
-        avg_loss = total_loss / max(num_batches, 1)
-
         if context.world_size > 1 and dist.is_initialized():
-            loss_tensor = torch.tensor([avg_loss], device=get_current_device())
+            stats = torch.tensor(
-            dist.all_reduce(loss_tensor, op=dist.ReduceOp.AVG)
+                [total_loss, float(num_batches)], device=get_current_device()
-            avg_loss = loss_tensor.item()
+            )
+            dist.all_reduce(stats, op=dist.ReduceOp.SUM)
+            avg_loss = (stats[0] / stats[1]).item()
+        else:
+            avg_loss = total_loss / max(num_batches, 1)
 
-        context.val_loss = avg_loss
         context.model.train()
+        return avg_loss
 
-        step_count = context.iteration // context.config.grad_accum_steps
+    @only_on_rank(0)
-        logger.info(
+    def _flush(self, epoch, step):
-            f"Epoch {context.epoch + 1}, Step {step_count}, Val Loss: {avg_loss:.4f}"
+        log_file = self.log_dir / f"epoch_{epoch}_step_{step}_metric.jsonl"
-        )
+        log_file.parent.mkdir(parents=True, exist_ok=True)
+        with open(log_file, "w") as f:
+            for log in self.log_cache:
+                f.write(json.dumps(log) + "\n")
 
-    def on_optimizer_step(self, context: TrainContext):
+    def on_optimizer_step(self, context):
-        if context.val_dataloader is None:
+        if (
-            return
+            context.val_dataloader is not None
-        cfg = context.config
+            and self.val_step > 0
-        if cfg.val_step <= 0:
+            and context.optimizer_step >= self._next_val_step
-            return
+        ):
-        step_count = context.iteration // cfg.grad_accum_steps
+            context.val_loss = self._run_validation(context)
-        if step_count % cfg.val_step == 0:
+            self._next_val_step = context.optimizer_step + self.val_step
-            self._run_validation(context)
+            self._append("validation", context, val_loss=context.val_loss)
+
+        step_metrics = [m for m in self.metrics if m != "val_loss"]
+        self._append("step", context, **self._metrics(context, step_metrics))
+
+        if context.optimizer_step - self.last_log_flush_step >= self.save_interval:
+            self._flush(context.epoch, context.optimizer_step)
+            self.last_log_flush_step = context.optimizer_step
+
+    def on_epoch_end(self, context):
+        self._append("epoch", context)
+
+    def on_train_end(self, context):
+        if context.optimizer_step != self.last_log_flush_step:
+            self._flush(context.epoch, context.optimizer_step)
+
+    def on_error(self, context):
+        self._flush(context.epoch, context.optimizer_step)

astrai/trainer/train_context.py

@@ -29,8 +29,9 @@ class TrainContext:
     executor: BaseExecutor = field(default=None)
 
     epoch: int = field(default=0)
-    iteration: int = field(default=0)
+    consumed_samples: int = field(default=0)
     loss: float = field(default=0.0)
+    grad_norm: Optional[float] = field(default=None)
     val_dataloader: Optional[DataLoader] = field(default=None)
     val_loss: Optional[float] = field(default=None)
 
@@ -38,6 +39,14 @@ class TrainContext:
     rank: int = field(default=0)
     kwargs: Dict[str, Any] = field(default_factory=dict)
 
+    @property
+    def optimizer_step(self) -> int:
+        return self.consumed_samples // (
+            self.config.batch_per_device
+            * self.world_size
+            * self.config.grad_accum_steps
+        )
+
 
 class TrainContextBuilder:
     def __init__(
@@ -63,7 +72,6 @@ class TrainContextBuilder:
 
         model = cfg.model_fn()
         model = model.to(device=device)
-        model.embed_tokens.neftune_noise_alpha = cfg.neftune_alpha
 
         model_config = {}
         if self._resume_dir:
@@ -90,7 +98,10 @@ class TrainContextBuilder:
                 if checkpoint.config:
                     context.model_config = checkpoint.config
                 context.epoch = checkpoint.epoch or cfg.start_epoch
-                context.iteration = checkpoint.iteration or cfg.start_batch
+                if checkpoint.consumed_samples > 0:
+                    context.consumed_samples = checkpoint.consumed_samples
+                else:
+                    context.consumed_samples = cfg.start_samples * context.world_size
                 context.checkpoint = checkpoint
 
         if cfg.lora is not None:
@@ -116,7 +127,7 @@ class TrainContextBuilder:
                 cfg.dataset, [n_train, n_val], generator=generator
             )
 
-        sampler_offset = context.iteration * cfg.batch_per_device
+        sampler_offset = context.consumed_samples // context.world_size
         sampler = ResumableDistributedSampler(
             data_source=train_dataset,
             start_epoch=context.epoch,

astrai/trainer/trainer.py

@@ -35,15 +35,14 @@ class Trainer:
                 cfg.ckpt_interval,
             ),
             CallbackFactory.create(
-                "metric_logger",
+                "metric",
                 log_dir=cfg.log_dir,
                 save_interval=cfg.ckpt_interval,
-                log_interval=cfg.log_interval,
                 metrics=cfg.metrics,
+                val_step=cfg.val_step,
             ),
             CallbackFactory.create("progress_bar", cfg.n_epoch),
             CallbackFactory.create("gradient_clipping", cfg.max_grad_norm),
-            CallbackFactory.create("validation"),
         ]
         return callbacks
 
@@ -74,7 +73,9 @@ class Trainer:
                         context.loss = loss.item()
                         stand_loss = loss / executor.grad_accum_steps
                         executor.backward(stand_loss)
-                        context.iteration += 1
+                        context.consumed_samples += (
+                            context.config.batch_per_device * context.world_size
+                        )
                         self._call_callbacks("on_batch_end", context)
 
                         if executor.sync_gradients:

pyproject.toml

@@ -9,8 +9,8 @@ readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
     "h5py==3.15.1",
-    "numpy==2.3.2",
+    "numpy==2.4.4",
-    "torch==2.7.1",
+    "torch==2.11.0",
     "tokenizers==0.21.4",
     "tqdm==4.67.1",
     "safetensors==0.5.3",
@@ -37,7 +37,7 @@ dev = ["pytest==9.0.2", "ruff"]
 where = ["."]
 
 [tool.pip]
-extra-index-url = "https://download.pytorch.org/whl/cu126"
+extra-index-url = "https://download.pytorch.org/whl/cu128"
 
 [tool.setuptools.dynamic]
 version = { attr = "astrai.__version__" }

scripts/demo/stream_chat.py

@@ -1,3 +1,4 @@
+from argparse import ArgumentParser
 from pathlib import Path
 
 import torch
@@ -7,42 +8,82 @@ from astrai.model import AutoModel
 from astrai.tokenize import AutoTokenizer
 
 PROJECT_ROOT = Path(__file__).resolve().parents[2]
-PARAMETER_ROOT = Path(PROJECT_ROOT, "params")
+
+
+def parse_args():
+    parser = ArgumentParser(description="Interactive streaming chat")
+    parser.add_argument(
+        "--model_path",
+        type=Path,
+        default=PROJECT_ROOT / "params",
+        help="Path to model weights (params/ or checkpoint/epoch_N_step_M/)",
+    )
+    parser.add_argument(
+        "--temperature",
+        type=float,
+        default=0.8,
+        help="Sampling temperature (default: 0.8)",
+    )
+    parser.add_argument(
+        "--top_p",
+        type=float,
+        default=0.95,
+        help="Top-p sampling threshold",
+    )
+    parser.add_argument(
+        "--top_k",
+        type=int,
+        default=50,
+        help="Top-k sampling threshold",
+    )
+    parser.add_argument(
+        "--max_tokens",
+        type=int,
+        default=2048,
+        help="Maximum tokens to generate",
+    )
+    parser.add_argument(
+        "--system_prompt",
+        type=str,
+        default="You are a helpful assistant.",
+        help="Optional system prompt",
+    )
+    return parser.parse_args()
 
 
 def chat():
-    model = AutoModel.from_pretrained(PARAMETER_ROOT)
+    args = parse_args()
-    tokenizer = AutoTokenizer.from_pretrained(PARAMETER_ROOT)
+    model_path = args.model_path
-    model.to(device="cuda", dtype=torch.bfloat16)
 
-    messages = [{"role": "system", "content": "You are a helpful assistant."}]
+    model = AutoModel.from_pretrained(model_path)
+    tokenizer = AutoTokenizer.from_pretrained(model_path)
+    model.to(device="cuda", dtype=torch.bfloat16)
     engine = InferenceEngine(model=model, tokenizer=tokenizer)
 
+    messages = [{"role": "system", "content": args.system_prompt}]
+
     while True:
         query = input(">> ")
         if query == "!exit":
             break
 
-        # Add user message
         messages.append({"role": "user", "content": query})
 
-        # Generate response
         full_response = ""
         prompt = tokenizer.apply_chat_template(messages, tokenize=False)
 
         for token in engine.generate(
             prompt=prompt,
             stream=True,
-            max_tokens=2048,
+            max_tokens=args.max_tokens,
-            temperature=0.8,
+            temperature=args.temperature,
-            top_p=0.95,
+            top_p=args.top_p,
-            top_k=50,
+            top_k=args.top_k,
         ):
             print(token, end="", flush=True)
             full_response += token
 
         print()
-        # Add assistant response to messages
         messages.append({"role": "assistant", "content": full_response.strip()})
 
 

scripts/eval/analyze_weights.py

@@ -0,0 +1,307 @@
+"""SVD effective rank & weight statistics analysis for model checkpoints."""
+
+import argparse
+import json
+from pathlib import Path
+
+import safetensors.torch
+import torch
+
+
+def effective_rank_metrics(w: torch.Tensor) -> dict:
+    if w.ndim == 1:
+        return {"shape": tuple(w.shape), "is_1d": True}
+
+    w = w.float()
+    s = torch.linalg.svdvals(w)
+    s_sq = s**2
+    total = s_sq.sum()
+    cumsum = torch.cumsum(s_sq, dim=0) / total
+
+    min_dim = min(w.shape[0], w.shape[1])
+    er_90 = (cumsum < 0.90).sum().item() + 1
+    er_95 = (cumsum < 0.95).sum().item() + 1
+    er_99 = (cumsum < 0.99).sum().item() + 1
+
+    p = s_sq / total
+    p = p[p > 1e-30]
+    entropy = -(p * torch.log(p)).sum()
+    entropic_rank = torch.exp(entropy).item()
+
+    return {
+        "shape": tuple(w.shape),
+        "min_dim": min_dim,
+        "er_90": er_90,
+        "er_95": er_95,
+        "er_99": er_99,
+        "er_99_norm": er_99 / min_dim,
+        "er_95_norm": er_95 / min_dim,
+        "entropic_rank": entropic_rank,
+        "entropic_rank_norm": entropic_rank / min_dim,
+        "top1_ratio": s[0].item() / s.sum().item(),
+        "top5_ratio": s[:5].sum().item() / s.sum().item(),
+        "decay_ratio": s[-1].item() / s[0].item(),
+        "condition_number": s[0].item() / s[-1].item(),
+        "mean": w.mean().item(),
+        "std": w.std().item(),
+        "min": w.min().item(),
+        "max": w.max().item(),
+    }
+
+
+def format_header(headers: list[str], widths: list[int]) -> str:
+    return "".join(h.ljust(w) for h, w in zip(headers, widths))
+
+
+def format_row(values: list[str], widths: list[int]) -> str:
+    return "".join(v.ljust(w) for v, w in zip(values, widths))
+
+
+def group_by_component(results: dict[str, dict]) -> dict[str, list[dict]]:
+    groups: dict[str, list[dict]] = {}
+    for key, r in results.items():
+        parts = key.split(".")
+        if parts[0] == "layers" and len(parts) >= 3:
+            sub = parts[2:]
+            if sub[0] == "attention":
+                comp = f"attn.{sub[1]}"
+            elif sub[0] == "mlp":
+                comp = f"mlp.{sub[1]}"
+            elif sub[0] == "input_norm":
+                comp = "input_norm"
+            elif sub[0] == "post_attention_norm":
+                comp = "post_attn_norm"
+            else:
+                comp = ".".join(sub)
+        else:
+            comp = key
+        groups.setdefault(comp, []).append(r)
+    return groups
+
+
+def print_component_summary(results: dict[str, dict], title: str):
+    groups = group_by_component(results)
+    matrix_groups = {
+        k: [v for v in vs if not v.get("is_1d")]
+        for k, vs in groups.items()
+        if any(not v.get("is_1d") for v in vs)
+    }
+
+    widths = [20, 12, 12, 12, 12, 12]
+    print(f"\n{title}")
+    print(
+        format_header(
+            ["Component", "N", "ER@99%", "EntRank%", "Top1 σ(%)", "Cond. Num"], widths
+        )
+    )
+    print("-" * sum(widths))
+
+    for name in sorted(matrix_groups.keys()):
+        items = matrix_groups[name]
+        n = len(items)
+        print(
+            format_row(
+                [
+                    name,
+                    str(n),
+                    f"{sum(r['er_99_norm'] for r in items) / n:.4f}",
+                    f"{sum(r['entropic_rank_norm'] for r in items) / n:.4f}",
+                    f"{sum(r['top1_ratio'] for r in items) / n:.4f}",
+                    f"{sum(r['condition_number'] for r in items) / n:.1f}",
+                ],
+                widths,
+            )
+        )
+
+    all_er = [
+        r["er_99_norm"]
+        for vs in matrix_groups.values()
+        for r in vs
+        if "_norm" not in r or not r.get("is_1d")
+    ]
+    if all_er:
+        m = sum(all_er) / len(all_er)
+        print(f"\n  Overall Mean ER@99: {m:.4f} ({m * 100:.1f}% of dimension)")
+        if m > 0.85:
+            print("  → HIGH utilization: model near capacity → need more params")
+        elif m > 0.5:
+            print("  → MODERATE utilization: some headroom left")
+        else:
+            print("  → LOW utilization: significant unused capacity")
+
+
+def print_layer_grid(results: dict[str, dict]):
+    comps = [
+        "attn.q_proj",
+        "attn.k_proj",
+        "attn.v_proj",
+        "attn.o_proj",
+        "mlp.up",
+        "mlp.gate",
+        "mlp.down",
+    ]
+    widths = [6] + [10] * len(comps)
+    metric = "er_99_norm"
+
+    print(f"\n--- Per-Layer Effective Rank (99% energy) ---")
+    print(format_header(["Layer"] + comps, widths))
+    print("-" * sum(widths))
+
+    layer_data: dict[int, dict[str, dict]] = {}
+    for key, r in results.items():
+        parts = key.split(".")
+        if parts[0] != "layers":
+            continue
+        li = int(parts[1])
+        sub = parts[2:]
+        if sub[0] == "attention":
+            cname = f"attn.{sub[1]}"
+        elif sub[0] == "mlp":
+            cname = f"mlp.{sub[1]}"
+        else:
+            continue
+        layer_data.setdefault(li, {})[cname] = r
+
+    for li in sorted(layer_data):
+        values = [str(li)]
+        for c in comps:
+            v = layer_data[li].get(c, {}).get(metric, 0)
+            values.append(f"{v:.4f}")
+        print(format_row(values, widths))
+
+
+def print_weight_stats(results: dict[str, dict]):
+    groups = group_by_component(results)
+    widths = [20, 12, 12, 12, 12]
+    print(f"\n--- Weight Value Statistics ---")
+    print(format_header(["Component", "Mean", "Std", "Min", "Max"], widths))
+    print("-" * sum(widths))
+
+    for name in sorted(groups.keys()):
+        items = groups[name]
+        means = [r.get("mean", 0) for r in items]
+        stds = [r.get("std", 0) for r in items]
+        mins = [r.get("min", 0) for r in items]
+        maxs = [r.get("max", 0) for r in items]
+        g_mean = sum(means) / len(means)
+        g_std = sum(stds) / len(stds)
+        g_min = min(mins)
+        g_max = max(maxs)
+        print(
+            format_row(
+                [
+                    name,
+                    f"{g_mean:.6f}",
+                    f"{g_std:.6f}",
+                    f"{g_min:.6f}",
+                    f"{g_max:.6f}",
+                ],
+                widths,
+            )
+        )
+
+
+def print_params_summary(results: dict[str, dict]):
+    total_2d = sum(
+        r["shape"][0] * r["shape"][1] for r in results.values() if not r.get("is_1d")
+    )
+    total_1d = sum(r["shape"][0] for r in results.values() if r.get("is_1d"))
+    print(f"\n  Total 2D params: {total_2d:,}")
+    print(f"  Total 1D params: {total_1d:,}")
+    print(f"  Total params:     {total_2d + total_1d:,}")
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="SVD effective rank & weight statistics of a model checkpoint."
+    )
+    parser.add_argument(
+        "--ckpt_dir",
+        type=str,
+        required=True,
+        help="Path to checkpoint directory (containing model.safetensors + config.json).",
+    )
+    parser.add_argument(
+        "--compare",
+        type=str,
+        nargs="*",
+        help="Additional checkpoint directories to compare against.",
+    )
+    parser.add_argument(
+        "--no_svd",
+        action="store_true",
+        help="Skip SVD analysis, only show weight statistics (mean/std/min/max).",
+    )
+    args = parser.parse_args()
+
+    def analyze_one(ckpt_dir: str, label: str):
+        ckpt_dir = Path(ckpt_dir)
+        weights_path = ckpt_dir / "model.safetensors"
+        if not weights_path.exists():
+            print(f"ERROR: {weights_path} not found")
+            return {}
+
+        meta = {}
+        meta_path = ckpt_dir / "meta.json"
+        if meta_path.exists():
+            with open(meta_path) as f:
+                meta = json.load(f)
+
+        print(f"\n{'=' * 70}")
+        print(f"  {label}: {ckpt_dir}")
+        if meta:
+            print(
+                f"  Iteration: {meta.get('iteration', '?')}, "
+                f"Strategy: {meta.get('strategy', '?')}, "
+                f"nprocs={meta.get('nprocs', '?')}"
+            )
+        print(f"{'=' * 70}")
+
+        print(f"Loading weights...")
+        sd = safetensors.torch.load_file(str(weights_path))
+        print(f"  {len(sd)} keys loaded")
+
+        weight_keys = [
+            k
+            for k in sd
+            if ".weight" in k and "rotary_embedding" not in k and "freqs_cis" not in k
+        ]
+
+        results = {}
+        if not args.no_svd:
+            print(f"Computing SVD on {len(weight_keys)} tensors...")
+            for i, k in enumerate(sorted(weight_keys)):
+                print(f"  [{i + 1}/{len(weight_keys)}] {k:<60s}", end="\r")
+                results[k] = effective_rank_metrics(sd[k])
+            print()
+        else:
+            print(f"Computing stats on {len(weight_keys)} tensors (no SVD)...")
+            for i, k in enumerate(sorted(weight_keys)):
+                t = sd[k]
+                results[k] = {
+                    "shape": tuple(t.shape),
+                    "is_1d": t.ndim == 1,
+                    "mean": t.float().mean().item(),
+                    "std": t.float().std().item(),
+                    "min": t.float().min().item(),
+                    "max": t.float().max().item(),
+                }
+
+        print_params_summary(results)
+        if not args.no_svd:
+            print_component_summary(
+                results, "\n=== SVD Effective Rank by Component ==="
+            )
+            print_layer_grid(results)
+        print_weight_stats(results)
+        return results
+
+    analyze_one(args.ckpt_dir, "Primary")
+
+    if args.compare:
+        for cdir in args.compare:
+            analyze_one(cdir, "Compare")
+
+
+if __name__ == "__main__":
+    main()

scripts/eval/evaluate_humaneval.py

@@ -1,22 +1,22 @@
-"""HumanEval code generation benchmark.
+"""HumanEval benchmark — functional pipeline design.
 
-Generates n completions per problem, extracts function bodies, executes
+Pipeline:
-against hidden tests, and computes pass@k.
+    load -> generate -> extract -> test -> score -> report
 
-Usage::
+Each stage is a pure function (except GPU/CPU-bound I/O stages).
-
+Config is a single dataclass; side effects are isolated at pipeline boundaries.
-    python scripts/tools/evaluate_humaneval.py --param_path ./params \
-        --data_path HumanEval.jsonl.gz --output results.json \
-        --num_samples 200 --temperature 0.8 --max_tokens 512
 """
 
 import argparse
+import itertools
 import json
 import os
 import re
+import subprocess
+import sys
+from dataclasses import dataclass
 from math import prod
-from multiprocessing import Process, Queue
+from typing import Dict, Iterator, List, Optional, Sequence, Tuple
-from typing import Dict, List, Optional, Tuple
 
 import numpy as np
 import torch
@@ -26,11 +26,15 @@ from astrai.inference import InferenceEngine
 from astrai.model import AutoModel
 from astrai.tokenize import AutoTokenizer
 
+# ---------------------------------------------------------------------------
+# Config
+# ---------------------------------------------------------------------------
+
 HUMANEVAL_URL = (
     "https://github.com/openai/human-eval/raw/master/data/HumanEval.jsonl.gz"
 )
 
-_STOP_SEQUENCES = [
+STOP_SEQUENCES = [
     "\nclass ",
     "\ndef ",
     "\n# ",
@@ -40,43 +44,85 @@ _STOP_SEQUENCES = [
 ]
 
 
-def _download_humaneval(data_path: str):
+@dataclass
-    if os.path.exists(data_path):
+class EvalConfig:
+    param_path: str = "./params"
+    data_path: str = "./humaneval/HumanEval.jsonl"
+    output: Optional[str] = None
+
+    test_only: Optional[str] = None
+    generate_only: bool = False
+
+    num_samples: int = 200
+    max_tokens: int = 512
+    temperature: float = 0.8
+    top_p: float = 0.95
+    top_k: int = 50
+    batch_size: int = 32
+    test_timeout: float = 3.0
+    test_workers: int = 8
+    k_values: Tuple[int, ...] = (1, 10, 100)
+    problem_indices: Optional[List[int]] = None
+
+
+def download(url: str, path: str):
+    if os.path.exists(path):
         return
     import gzip
     import urllib.request
 
-    os.makedirs(os.path.dirname(data_path) or ".", exist_ok=True)
+    os.makedirs(os.path.dirname(path) or ".", exist_ok=True)
-    print(f"Downloading HumanEval from {HUMANEVAL_URL} ...")
+    print(f"Downloading {url} ...")
-    tmp = data_path + ".tmp"
+    tmp = path + ".tmp"
-    urllib.request.urlretrieve(HUMANEVAL_URL, tmp)
+    urllib.request.urlretrieve(url, tmp)
     with gzip.open(tmp, "rb") as f_in:
-        with open(data_path, "wb") as f_out:
+        with open(path, "wb") as f_out:
             f_out.write(f_in.read())
     os.remove(tmp)
-    print(f"  saved to {data_path}")
+    print(f"  saved to {path}")
 
 
-def _load_problems(data_path: str) -> List[dict]:
+def load_jsonl(path: str) -> List[dict]:
-    problems = []
+    rows = []
-    with open(data_path, "r", encoding="utf-8") as f:
+    with open(path, encoding="utf-8") as f:
         for line in f:
             line = line.strip()
             if line:
-                problems.append(json.loads(line))
+                rows.append(json.loads(line))
-    return problems
+    return rows
 
 
-def _extract_function_body(code: str, entry_point: str) -> Optional[str]:
+def save_json(path: str, data):
-    """Extract the function body from a completion."""
+    with open(path, "w", encoding="utf-8") as f:
+        json.dump(data, f, indent=2, ensure_ascii=False)
+
+
+def create_engine(param_path: str, batch_size: int) -> InferenceEngine:
+    model = AutoModel.from_pretrained(param_path)
+    tokenizer = AutoTokenizer.from_pretrained(param_path)
+    model.to(device="cuda", dtype=torch.bfloat16)
+    return InferenceEngine(
+        model=model,
+        tokenizer=tokenizer,
+        max_batch_size=batch_size,
+    )
+
+
+def trim_stop(text: str) -> str:
+    for stop in STOP_SEQUENCES:
+        idx = text.find(stop)
+        if idx != -1:
+            text = text[:idx]
+    return text
+
+
+def extract_body(code: str, entry_point: str) -> Optional[str]:
     pattern = rf"def\s+{re.escape(entry_point)}\b[^:]*:"
     match = re.search(pattern, code)
     if not match:
-        # Use the full code as-is if we can't find the function
         return code
 
-    body_start = match.end()
+    lines = code[match.end() :].split("\n")
-    lines = code[body_start:].split("\n")
     body_lines = []
     started = False
 
@@ -94,240 +140,253 @@ def _extract_function_body(code: str, entry_point: str) -> Optional[str]:
         body_lines.append(stripped)
 
     body = "\n".join(body_lines)
-    if not body.strip():
+    return body if body.strip() else None
-        return None
-    return body
 
 
-def _trim_stop_sequences(text: str) -> str:
+def deduplicate(seq: Sequence[str]) -> List[str]:
-    for stop in _STOP_SEQUENCES:
-        idx = text.find(stop)
-        if idx != -1:
-            text = text[:idx]
-    return text
-
-
-def _execute_code(problem: dict, completion: str, timeout: float = 3.0) -> bool:
-    """Run the completion against hidden tests in a subprocess."""
-
-    def _worker(queue, full_code):
-        try:
-            namespace = {}
-            exec(full_code, namespace)
-            check = namespace.get("check")
-            if check is None:
-                queue.put(False)
-                return
-            check(namespace.get(problem["entry_point"]))
-            queue.put(True)
-        except Exception:
-            queue.put(False)
-
-    full_code = problem["prompt"] + completion + "\n" + problem["test"]
-
-    queue: Queue = Queue()
-    proc = Process(target=_worker, args=(queue, full_code))
-    proc.start()
-    proc.join(timeout)
-
-    if proc.is_alive():
-        proc.terminate()
-        proc.join()
-        return False
-
-    try:
-        return queue.get_nowait()
-    except Exception:
-        return False
-
-
-def _pass_at_k(n: int, c: int, k: int) -> float:
-    """Unbiased estimator of pass@k."""
-    if n - c < k:
-        return 1.0
-    return 1.0 - float(prod(1.0 - k / np.arange(n - c + 1, n + 1)))
-
-
-def _deduplicate(completions: List[str]) -> List[str]:
     seen = set()
-    unique = []
+    return [x for x in seq if not (x in seen or seen.add(x))]
-    for c in completions:
-        if c not in seen:
-            seen.add(c)
-            unique.append(c)
-    return unique
 
 
-def _generate(
+def generate_batch(
     engine: InferenceEngine,
     prompt: str,
-    num_samples: int,
+    n: int,
+    batch_size: int,
     max_tokens: int,
     temperature: float,
     top_p: float,
     top_k: int,
-    batch_size: int,
 ) -> List[str]:
-    batches = [prompt] * min(batch_size, num_samples)
     completions = []
-    remaining = num_samples
+    remaining = n
-
     while remaining > 0:
         current = min(batch_size, remaining)
-        batch_prompts = batches[:current]
         outputs = engine.generate(
-            prompt=batch_prompts,
+            prompt=[prompt] * current,
             stream=False,
             max_tokens=max_tokens,
             temperature=temperature,
             top_p=top_p,
             top_k=top_k,
         )
-        if isinstance(outputs, str):
+        completions.extend(outputs if isinstance(outputs, list) else [outputs])
-            outputs = [outputs]
-        completions.extend(outputs)
         remaining -= current
-
+    return deduplicate(completions)
-    return _deduplicate(completions)
 
 
-def evaluate(
+def extract_completions(
+    raw: Sequence[str],
+    entry_point: str,
+) -> List[str]:
+    bodies = []
+    for r in raw:
+        t = trim_stop(r)
+        body = extract_body(t, entry_point)
+        if body:
+            bodies.append(body)
+    return bodies
+
+
+def generate_all(
     engine: InferenceEngine,
-    problems: List[dict],
+    problems: Sequence[dict],
-    num_samples: int,
+    cfg: EvalConfig,
-    max_tokens: int,
+) -> List[dict]:
-    temperature: float,
+    results = []
-    top_p: float,
+    for problem in tqdm.tqdm(problems, desc="Generating", unit="problem"):
-    top_k: int,
+        raw = generate_batch(
-    batch_size: int,
-    k_values: Tuple[int, ...] = (1, 10, 100),
-) -> Dict:
-    results = {}
-    all_pass_at_k = {k: [] for k in k_values}
-
-    for problem in tqdm.tqdm(problems, desc="HumanEval", unit="problem"):
-        task_id = problem["task_id"]
-        prompt = problem["prompt"]
-        entry_point = problem["entry_point"]
-
-        raw_completions = _generate(
             engine,
-            prompt,
+            problem["prompt"],
-            num_samples,
+            cfg.num_samples,
-            max_tokens,
+            cfg.batch_size,
-            temperature,
+            cfg.max_tokens,
-            top_p,
+            cfg.temperature,
-            top_k,
+            cfg.top_p,
-            batch_size,
+            cfg.top_k,
+        )
+        bodies = extract_completions(raw, problem["entry_point"])
+        results.append(
+            dict(
+                task_id=problem["task_id"],
+                entry_point=problem["entry_point"],
+                prompt=problem["prompt"],
+                test=problem["test"],
+                completions=bodies,
+            )
         )
-
-        completions = []
-        for raw in raw_completions:
-            trimmed = _trim_stop_sequences(raw)
-            body = _extract_function_body(trimmed, entry_point)
-            if body:
-                completions.append(body)
-
-        passed = 0
-        for comp in completions:
-            if _execute_code(problem, comp):
-                passed += 1
-
-        n = len(completions)
-        c = passed
-        result = {"task_id": task_id, "n": n, "passed": c}
-        for k in k_values:
-            result[f"pass@{k}"] = round(_pass_at_k(n, c, k), 4)
-            all_pass_at_k[k].append(_pass_at_k(n, c, k))
-        results[task_id] = result
-
-    summary = {}
-    for k in k_values:
-        vals = all_pass_at_k[k]
-        summary[f"pass@{k}"] = round(float(np.mean(vals)), 4)
-    results["_summary"] = summary
-
     return results
 
 
-def main():
+def execute_one(args: tuple) -> bool:
-    parser = argparse.ArgumentParser(description="HumanEval benchmark")
+    full_code, entry_point, timeout = args
-    parser.add_argument(
+    try:
-        "--param_path", type=str, default="./params", help="Model directory"
+        r = subprocess.run(
-    )
+            [sys.executable, "-c", full_code],
-    parser.add_argument(
+            capture_output=True,
-        "--data_path",
+            timeout=timeout,
+        )
+        return r.returncode == 0
+    except subprocess.TimeoutExpired:
+        return False
+    except Exception:
+        return False
+
+
+def test_one(item: dict, cfg: EvalConfig) -> Tuple[str, int, int]:
+    from concurrent.futures import ProcessPoolExecutor
+
+    task_id = item["task_id"]
+    completions = item["completions"]
+    codes = [
+        (
+            item["prompt"] + c + "\n" + item["test"],
+            item["entry_point"],
+            cfg.test_timeout,
+        )
+        for c in completions
+    ]
+    n = len(codes)
+    passed = 0
+    with ProcessPoolExecutor(max_workers=cfg.test_workers) as pool:
+        for ok in pool.map(execute_one, codes):
+            if ok:
+                passed += 1
+    return task_id, n, passed
+
+
+def test_all(
+    items: Sequence[dict],
+    cfg: EvalConfig,
+) -> Iterator[Tuple[str, int, int]]:
+    for item in tqdm.tqdm(items, desc="Testing", unit="problem"):
+        yield test_one(item, cfg)
+
+
+def pass_at_k(n: int, c: int, k: int) -> float:
+    if n - c < k:
+        return 1.0
+    return 1.0 - float(prod(1.0 - k / np.arange(n - c + 1, n + 1)))
+
+
+def score_results(
+    results: Iterator[Tuple[str, int, int]],
+    k_values: Tuple[int, ...],
+) -> Dict:
+    # filter to k <= n (peek first result to get n)
+    first = next(results)
+    results = itertools.chain([first], results)
+    n = first[1]
+    k_values = tuple(k for k in k_values if k <= n)
+
+    scores = {k: [] for k in k_values}
+    output = {}
+    for task_id, n, passed in results:
+        entry = {"task_id": task_id, "n": n, "passed": passed}
+        for k in k_values:
+            pk = round(pass_at_k(n, passed, k), 4)
+            entry[f"pass@{k}"] = pk
+            scores[k].append(pk)
+        output[task_id] = entry
+
+    summary = {}
+    for k in k_values:
+        vals = scores[k]
+        summary[f"pass@{k}"] = round(float(np.mean(vals)), 4)
+    output["_summary"] = summary
+    return output
+
+
+def run_pipeline(cfg: EvalConfig) -> Dict:
+    if cfg.test_only:
+        with open(cfg.test_only, encoding="utf-8") as f:
+            generated = json.load(f)
+    else:
+        download(HUMANEVAL_URL, cfg.data_path)
+
+        problems = load_jsonl(cfg.data_path)
+        if cfg.problem_indices:
+            problems = [problems[i] for i in cfg.problem_indices if i < len(problems)]
+
+        engine = create_engine(cfg.param_path, cfg.batch_size)
+
+        try:
+            generated = generate_all(engine, problems, cfg)
+        finally:
+            engine.shutdown()
+
+        if cfg.output:
+            mid = cfg.output.replace(".json", "_completions.json")
+            save_json(mid, generated)
+            print(f"Completions saved to {mid}")
+
+        if cfg.generate_only:
+            return {}
+
+    results = test_all(generated, cfg)
+    scored = score_results(results, cfg.k_values)
+    return scored
+
+
+def parse_args(argv: Optional[List[str]] = None) -> EvalConfig:
+    p = argparse.ArgumentParser(description="HumanEval benchmark")
+    p.add_argument("--param_path", type=str, default="./params")
+    p.add_argument("--data_path", type=str, default="./humaneval/HumanEval.jsonl")
+    p.add_argument("--output", type=str, default=None)
+    p.add_argument(
+        "--test_only",
         type=str,
-        default="./humaneval/HumanEval.jsonl",
-        help="HumanEval JSONL file (auto-download if missing)",
-    )
-    parser.add_argument("--output", type=str, default=None, help="Output JSON path")
-    parser.add_argument(
-        "--num_samples",
-        type=int,
-        default=200,
-        help="Completions per problem",
-    )
-    parser.add_argument(
-        "--max_tokens", type=int, default=512, help="Max generation tokens"
-    )
-    parser.add_argument(
-        "--temperature", type=float, default=0.8, help="Sampling temperature"
-    )
-    parser.add_argument("--top_p", type=float, default=0.95, help="Top-p sampling")
-    parser.add_argument("--top_k", type=int, default=50, help="Top-k sampling")
-    parser.add_argument(
-        "--batch_size", type=int, default=1, help="Inference batch size"
-    )
-    parser.add_argument(
-        "--problems",
-        type=int,
-        nargs="+",
         default=None,
-        help="Specific problem indices (0-based)",
+        help="Skip generation, test existing completions JSON",
     )
-    args = parser.parse_args()
+    p.add_argument(
-
+        "--generate_only", action="store_true", help="Only generate, skip testing"
-    _download_humaneval(args.data_path)
-    problems = _load_problems(args.data_path)
-    if args.problems:
-        problems = [problems[i] for i in args.problems if i < len(problems)]
-
-    model = AutoModel.from_pretrained(args.param_path)
-    tokenizer = AutoTokenizer.from_pretrained(args.param_path)
-    model.to(device="cuda", dtype=torch.bfloat16)
-
-    engine = InferenceEngine(
-        model=model,
-        tokenizer=tokenizer,
-        max_batch_size=args.batch_size,
     )
+    p.add_argument("--num_samples", type=int, default=200)
+    p.add_argument("--max_tokens", type=int, default=512)
+    p.add_argument("--temperature", type=float, default=0.8)
+    p.add_argument("--top_p", type=float, default=0.95)
+    p.add_argument("--top_k", type=int, default=50)
+    p.add_argument("--batch_size", type=int, default=32)
+    p.add_argument("--test_workers", type=int, default=8)
+    p.add_argument("--test_timeout", type=float, default=3.0)
+    p.add_argument("--problems", type=int, nargs="+", default=None)
+    args = p.parse_args(argv)
 
-    results = evaluate(
+    return EvalConfig(
-        engine=engine,
+        param_path=args.param_path,
-        problems=problems,
+        data_path=args.data_path,
+        output=args.output,
+        test_only=args.test_only,
+        generate_only=args.generate_only,
         num_samples=args.num_samples,
         max_tokens=args.max_tokens,
         temperature=args.temperature,
         top_p=args.top_p,
         top_k=args.top_k,
         batch_size=args.batch_size,
-        k_values=(1, 10, 100),
+        test_workers=args.test_workers,
+        test_timeout=args.test_timeout,
+        problem_indices=args.problems,
     )
 
-    summary = results.pop("_summary")
+
+def report(scored: Dict):
+    summary = scored.pop("_summary", {})
     print(f"\n{'=' * 60}")
     for k, v in summary.items():
         print(f"  {k}: {v:.2%}")
     print(f"{'=' * 60}")
+    scored["_summary"] = summary
 
-    if args.output:
-        results["_summary"] = summary
-        with open(args.output, "w", encoding="utf-8") as f:
-            json.dump(results, f, indent=2, ensure_ascii=False)
-        print(f"Results saved to {args.output}")
 
-    engine.shutdown()
+def main():
+    cfg = parse_args()
+    scored = run_pipeline(cfg)
+    report(scored)
+    if cfg.output:
+        save_json(cfg.output, scored)
+        print(f"Results saved to {cfg.output}")
 
 
 if __name__ == "__main__":

scripts/eval/evaluate_ifd.py

@@ -1,24 +1,23 @@
 """IFD (Instruction Following Difficulty) data quality scoring.
 
-Computes IFD scores for instruction-response pairs to guide data selection.
+IFD = conditional_NLL / unconditional_NLL
-IFD = conditional_NLL / unconditional_NLL, where:
 
-- conditional_NLL: average CE loss on response tokens given instruction context
+- Messages format: plain text concatenation (no chat template)
-- unconditional_NLL: average CE loss on response tokens alone
+- Plain format: raw instr_key + resp_key fields
 
-Higher IFD (close to 1) = instruction provides less help = harder sample.
+v2 changelog:
-Lower IFD (close to 0) = instruction provides strong guidance = easy sample.
+  - Same token set: unconditional pass prefixes resp with a plain-text sentinel
-IFD > 1 = instruction misleads the model = likely low-quality data.
+    (default ``\\n``; use ``--sentinel_text ""`` for bos/pad fallback).
-
+    Both branches predict the identical N resp tokens.
-Usage::
+    Single-token answers (rl=1) are now supported.
-
+  - ctx_len tracked in output
-    python scripts/eval/ifd.py --param_path ./params \
+  - skip_reason for None samples (no more silent None)
-        --input data.jsonl --output data_with_ifd.jsonl \
+  - --per_token for per-token IFD breakdown
-        --instr_key instruction --resp_key response
 """
 
 import argparse
 import json
+import statistics
 
 import torch
 import torch.nn.functional as F
@@ -28,120 +27,396 @@ from astrai.model import AutoModel
 from astrai.tokenize import AutoTokenizer
 
 
-def compute_ifd(
+def _pack_bins(pairs, max_len):
+    """BFD bin packing: pack (c+r) into bins of max total length."""
+    indexed = sorted(enumerate(pairs), key=lambda x: -(len(x[1][0]) + len(x[1][1])))
+    bins = []
+    lengths = []
+    for orig_idx, (c, r) in indexed:
+        size = len(c) + len(r)
+        best_bin = -1
+        for bi, rem in enumerate(lengths):
+            if rem >= size:
+                if best_bin < 0 or rem < lengths[best_bin]:
+                    best_bin = bi
+        if best_bin >= 0:
+            bins[best_bin].append((orig_idx, c, r))
+            lengths[best_bin] -= size
+        else:
+            bins.append([(orig_idx, c, r)])
+            lengths.append(max_len - size)
+    return bins
+
+
+def _resolve_sentinel_ids(tokenizer, sentinel_text):
+    """Tokenize the sentinel text for the unconditional pass prefix.
+
+    Falls back to bos/pad_token_id when sentinel_text is empty or
+    cannot be encoded.
+    """
+    if sentinel_text:
+        ids = tokenizer.encode(sentinel_text, add_special_tokens=False)
+        if ids:
+            return ids
+    for attr in ("bos_token_id", "pad_token_id", "eos_token_id"):
+        tid = getattr(tokenizer, attr, None)
+        if tid is not None:
+            return [tid]
+    return [0]
+
+
+@torch.inference_mode()
+def _score_batch(
+    pairs, model, device, max_len=2048, sentinel_ids=None, per_token=False
+):
+    """BFD-packed IFD with text-sentinel-anchored unconditional pass.
+
+    Conditional:   (ctx + resp[0..i-1]) → resp[i],  i = 0..N-1
+    Unconditional: (<sentinel> + resp[0..i-1]) → resp[i],  i = 0..N-1
+
+    Both branches predict the identical N response tokens.  A short
+    plain-text sentinel gives the unconditional pass a prefix so that
+    every response token can be predicted.  Single-token answers (rl=1)
+    are supported.
+    """
+    if not pairs:
+        return []
+
+    if sentinel_ids is None:
+        sentinel_ids = [0]
+
+    bins = _pack_bins(pairs, max_len)
+    result = [None] * len(pairs)
+
+    # ---- conditional pass (packed, per-document position IDs) ----
+    for bin_items in bins:
+        seq_ids = []
+        global_pos = []
+        doc_ids = []
+        doc_offsets = []
+
+        for di, (orig_idx, c, r) in enumerate(bin_items):
+            ctx_len = len(c)
+            start = len(seq_ids)
+            item_len = len(c) + len(r)
+            seq_ids.extend(c)
+            seq_ids.extend(r)
+            end = len(seq_ids)
+            global_pos.extend(range(item_len))
+            doc_ids.extend([di] * item_len)
+            doc_offsets.append((start, end, orig_idx, ctx_len))
+
+        full_ids = torch.tensor([seq_ids], device=device, dtype=torch.long)
+        pos_ids = torch.tensor([global_pos], device=device, dtype=torch.long)
+        seq_len = len(seq_ids)
+        causal = torch.tril(
+            torch.ones(seq_len, seq_len, dtype=torch.bool, device=device)
+        )
+        doc_t = torch.tensor([doc_ids], device=device)
+        doc_mask = doc_t.unsqueeze(-1) == doc_t.unsqueeze(-2)
+        attn_mask = (causal & doc_mask[0]).unsqueeze(0).unsqueeze(0)
+        logits_full = model(full_ids, position_ids=pos_ids, input_mask=attn_mask)[
+            "logits"
+        ][0]
+
+        for start, end, orig_idx, ctx_len in doc_offsets:
+            rl = end - start - ctx_len
+            resp_start = start + ctx_len - 1
+            resp_logits = logits_full[resp_start : end - 1]
+            resp_targets = torch.tensor(
+                seq_ids[start + ctx_len : end], device=device, dtype=torch.long
+            )
+            cond_losses = F.cross_entropy(
+                resp_logits, resp_targets, reduction="none"
+            ).cpu()
+            result[orig_idx] = {
+                "_cond_losses": cond_losses,
+                "_rl": rl,
+                "_ctx_len": ctx_len,
+            }
+
+    # ---- unconditional pass (sentinel-prefixed, batched 2D) ----
+    valid_items = [
+        (
+            i,
+            result[i]["_rl"],
+            result[i]["_ctx_len"],
+            result[i]["_cond_losses"],
+            pairs[i][1],
+        )
+        for i in range(len(pairs))
+        if result[i] is not None and "_cond_losses" in result[i]
+    ]
+    if not valid_items:
+        return result
+
+    valid_items.sort(key=lambda x: -x[1])
+    prefix_len = len(sentinel_ids)
+    max_rl = prefix_len + max(rl for _, rl, _, _, _ in valid_items)
+    bsz = len(valid_items)
+
+    u_batch = torch.zeros(bsz, max_rl, dtype=torch.long, device=device)
+    for ri, (_, rl, _, _, r_ids) in enumerate(valid_items):
+        u_batch[ri, :prefix_len] = torch.tensor(sentinel_ids, dtype=torch.long)
+        u_batch[ri, prefix_len : prefix_len + rl] = torch.tensor(
+            r_ids, dtype=torch.long
+        )
+
+    logits_resp = model(u_batch)["logits"]
+
+    for ri, (orig_idx, rl, ctx_len, cond_losses, _) in enumerate(valid_items):
+        unp_logits = logits_resp[ri, prefix_len - 1 : prefix_len - 1 + rl]
+        unp_targets = u_batch[ri, prefix_len : prefix_len + rl]
+        uncond_losses = F.cross_entropy(unp_logits, unp_targets, reduction="none").cpu()
+
+        L_cond = cond_losses.mean().item()
+        L_uncond = uncond_losses.mean().item()
+        ifd = L_cond / L_uncond if L_uncond > 0 else None
+
+        out = {
+            "L_cond": round(L_cond, 6),
+            "L_uncond": round(L_uncond, 6),
+            "ifd": round(ifd, 6) if ifd is not None else None,
+            "ctx_len": ctx_len,
+            "resp_len": rl,
+        }
+        if per_token:
+            per = [
+                (round(c.item() / u.item(), 6) if u.item() > 0 else None)
+                for c, u in zip(cond_losses, uncond_losses)
+            ]
+            out["ifd_per_token"] = per
+        result[orig_idx] = out
+
+    return result
+
+
+def _trim(context_ids, resp_ids, max_len):
+    """Truncate to fit max_len, keeping response intact if possible."""
+    if len(resp_ids) > max_len // 2:
+        resp_ids = resp_ids[: max_len // 2]
+    full_ids = context_ids + resp_ids
+    if len(full_ids) <= max_len:
+        return context_ids, resp_ids
+    overflow = len(full_ids) - max_len
+    if overflow >= len(context_ids):
+        return [], resp_ids[:max_len]
+    return context_ids[overflow:], resp_ids
+
+
+def score_plain(
     model,
     tokenizer,
-    instruction: str,
+    instruction,
-    response: str,
+    response,
-    device: str,
+    device,
-    max_len: int = 2048,
+    max_len=2048,
-) -> dict:
+    sentinel_ids=None,
-    instr_ids = tokenizer.encode(instruction)
+    per_token=False,
-    resp_ids = tokenizer.encode(response)
+):
-
+    """Compute IFD for a single instruction-response pair (plain format)."""
-    if not resp_ids:
+    ctx_ids = tokenizer.encode(instruction, add_special_tokens=False)
+    resp_ids = tokenizer.encode(response, add_special_tokens=False)
+    ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+    if not ctx_ids or not resp_ids:
         return {
             "L_cond": None,
             "L_uncond": None,
             "ifd": None,
-            "error": "empty response",
+            "skip_reason": "empty ctx or resp",
         }
+    return _score_batch(
+        [(ctx_ids, resp_ids)],
+        model,
+        device,
+        max_len,
+        sentinel_ids=sentinel_ids,
+        per_token=per_token,
+    )[0]
 
-    # Truncate instruction if total length exceeds max_len
-    qa_len = len(instr_ids) + len(resp_ids)
-    if qa_len > max_len:
-        overflow = qa_len - max_len
-        instr_ids = instr_ids[overflow:]
-
-    instr_len = len(instr_ids)
-    resp_len = len(resp_ids)
-
-    # Conditional: instruction + response
-    qa_ids = instr_ids + resp_ids
-    qa_tensor = torch.tensor([qa_ids], device=device, dtype=torch.long)
-
-    with torch.inference_mode():
-        logits_qa = model(qa_tensor)["logits"][0]  # [qa_len, vocab]
-
-    resp_logits = logits_qa[instr_len - 1 : -1]  # predict response tokens
-    resp_targets = torch.tensor(resp_ids, device=device, dtype=torch.long)
-    L_cond = F.cross_entropy(resp_logits, resp_targets, reduction="mean").item()
-
-    # Unconditional: response alone
-    resp_tensor = torch.tensor([resp_ids], device=device, dtype=torch.long)
-
-    with torch.inference_mode():
-        logits_resp = model(resp_tensor)["logits"][0]  # [resp_len, vocab]
-
-    unp_logits = logits_resp[:-1]  # causal shift
-    unp_targets = resp_tensor[0, 1:]
-    L_uncond = F.cross_entropy(unp_logits, unp_targets, reduction="mean").item()
-
-    ifd = L_cond / L_uncond if L_uncond > 0 else None
 
+def score_messages(
+    model, tokenizer, messages, device, max_len=2048, sentinel_ids=None, per_token=False
+):
+    """Compute IFD for each assistant turn in a messages array."""
+    turns = []
+    for i, msg in enumerate(messages):
+        if msg.get("role") != "assistant":
+            continue
+        ctx_text = "\n\n".join(m["content"] for m in messages[:i])
+        ctx_ids = tokenizer.encode(ctx_text)
+        resp_ids = tokenizer.encode(msg["content"], add_special_tokens=False)
+        ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+        if ctx_ids and resp_ids:
+            turns.append((ctx_ids, resp_ids))
+    if not turns:
+        return None
+    raw_scores = _score_batch(
+        turns, model, device, max_len, sentinel_ids=sentinel_ids, per_token=per_token
+    )
+    valid = [s for s in raw_scores if s is not None and s.get("ifd") is not None]
+    if not valid:
+        return {"ifd": None, "ifd_turns": raw_scores}
+    avg = sum(s["ifd"] for s in valid) / len(valid)
     return {
-        "L_cond": round(L_cond, 6),
+        "ifd": avg,
-        "L_uncond": round(L_uncond, 6),
+        "ifd_detail": valid[0] if len(valid) == 1 else None,
-        "ifd": round(ifd, 6) if ifd is not None else None,
+        "ifd_turns": raw_scores,
-        "instr_len": instr_len,
-        "resp_len": resp_len,
-        "error": None,
     }
 
 
 def process_file(
-    param_path: str,
+    param_path,
-    input_file: str,
+    input_file,
-    output_file: str,
+    output_file,
-    instr_key: str,
+    instr_key,
-    resp_key: str,
+    resp_key,
-    max_len: int,
+    max_len=2048,
+    data_format="plain",
+    batch_size=1,
+    device=None,
+    sentinel_text="\n",
+    per_token=False,
 ):
-    device = "cuda" if torch.cuda.is_available() else "cpu"
+    if device is None:
-    dtype = torch.bfloat16 if device == "cuda" else torch.float32
+        device = "cuda" if torch.cuda.is_available() else "cpu"
+    dtype = torch.bfloat16 if "cuda" in device else torch.float32
 
     model = AutoModel.from_pretrained(param_path)
     tokenizer = AutoTokenizer.from_pretrained(param_path)
     model.to(device=device, dtype=dtype)
     model.eval()
 
-    with open(input_file, "r", encoding="utf-8") as f:
+    sentinel_ids = _resolve_sentinel_ids(tokenizer, sentinel_text)
+
+    with open(input_file, encoding="utf-8") as f:
         data = [json.loads(line) for line in f if line.strip()]
 
     results = []
-    ifd_values = []
+    all_ifds = []
+    buffer = []
 
-    with torch.inference_mode():
+    for item in tqdm.tqdm(data, desc="Computing IFD", unit="sample"):
-        for item in tqdm.tqdm(data, desc="Computing IFD", unit="sample"):
+        if data_format == "messages":
-            instruction = item[instr_key]
+            turns = []
-            response = item[resp_key]
+            for i, msg in enumerate(item.get("messages", [])):
-            scores = compute_ifd(
+                if msg.get("role") != "assistant":
-                model, tokenizer, instruction, response, device, max_len
+                    continue
+                ctx_text = "\n\n".join(m["content"] for m in item["messages"][:i])
+                ctx_ids = tokenizer.encode(ctx_text)
+                resp_ids = tokenizer.encode(msg["content"], add_special_tokens=False)
+                ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+                if ctx_ids and resp_ids:
+                    turns.append((ctx_ids, resp_ids))
+            if not turns:
+                results.append(
+                    {
+                        **item,
+                        "ifd": None,
+                        "skip_reason": "no valid assistant turns",
+                        "ifd_turns": [],
+                    }
+                )
+                continue
+            buffer.append((item, turns, "messages"))
+        else:
+            ctx_ids = tokenizer.encode(item[instr_key], add_special_tokens=False)
+            resp_ids = tokenizer.encode(item[resp_key], add_special_tokens=False)
+            ctx_ids, resp_ids = _trim(ctx_ids, resp_ids, max_len)
+            if not ctx_ids or not resp_ids:
+                results.append(
+                    {
+                        **item,
+                        "ifd": None,
+                        "ifd_detail": {"skip_reason": "empty ctx or resp"},
+                    }
+                )
+                continue
+            buffer.append((item, [(ctx_ids, resp_ids)], "plain"))
+
+        if len(buffer) >= batch_size:
+            _flush_buffer(
+                buffer,
+                results,
+                all_ifds,
+                model,
+                device,
+                max_len,
+                sentinel_ids,
+                per_token,
             )
-            ifd_values.append(scores["ifd"])
+
-            results.append({**item, "ifd": scores["ifd"], "ifd_detail": scores})
+    if buffer:
+        _flush_buffer(
+            buffer, results, all_ifds, model, device, max_len, sentinel_ids, per_token
+        )
 
     with open(output_file, "w", encoding="utf-8") as f:
         for item in results:
             f.write(json.dumps(item, ensure_ascii=False) + "\n")
 
-    valid_ifd = [v for v in ifd_values if v is not None]
+    valid_ifd = [v for v in all_ifds if v is not None]
     if valid_ifd:
-        import statistics
-
         print(f"\n{'=' * 50}")
-        print(f"  Samples:    {len(data)}")
+        print(f"  Samples:       {len(data)}")
-        print(f"  Valid IFD:  {len(valid_ifd)}")
+        print(f"  Valid IFD:     {len(valid_ifd)}")
-        print(f"  Mean IFD:   {statistics.mean(valid_ifd):.4f}")
+        print(f"  Skipped:       {len(data) - len(valid_ifd)}")
-        print(f"  Median IFD: {statistics.median(valid_ifd):.4f}")
+        print(f"  Mean IFD:      {statistics.mean(valid_ifd):.4f}")
-        print(f"  Stdev IFD:  {statistics.stdev(valid_ifd):.4f}")
+        print(f"  Median IFD:    {statistics.median(valid_ifd):.4f}")
-        print(f"  Min IFD:    {min(valid_ifd):.4f}")
+        if len(valid_ifd) > 1:
-        print(f"  Max IFD:    {max(valid_ifd):.4f}")
+            print(f"  Stdev IFD:     {statistics.stdev(valid_ifd):.4f}")
+        print(f"  Min IFD:       {min(valid_ifd):.4f}")
+        print(f"  Max IFD:       {max(valid_ifd):.4f}")
         print(f"{'=' * 50}")
-
     print(f"Results saved to {output_file}")
 
 
+def _flush_buffer(
+    buffer, results, all_ifds, model, device, max_len, sentinel_ids, per_token
+):
+    all_pairs = []
+    indices = []
+    for item, turns, fmt in buffer:
+        start = len(all_pairs)
+        all_pairs.extend(turns)
+        indices.append((item, turns, fmt, start, len(all_pairs)))
+
+    raw = _score_batch(
+        all_pairs,
+        model,
+        device,
+        max_len,
+        sentinel_ids=sentinel_ids,
+        per_token=per_token,
+    )
+
+    for item, turns, fmt, start, end in indices:
+        turn_scores = raw[start:end]
+        if fmt == "messages":
+            valid = [
+                s for s in turn_scores if s is not None and s.get("ifd") is not None
+            ]
+            if not valid:
+                results.append({**item, "ifd": None, "ifd_turns": turn_scores})
+            else:
+                avg = sum(s["ifd"] for s in valid) / len(valid)
+                all_ifds.append(avg)
+                results.append(
+                    {
+                        **item,
+                        "ifd": avg,
+                        "ifd_detail": valid[0] if len(valid) == 1 else None,
+                        "ifd_turns": turn_scores,
+                    }
+                )
+        else:
+            score = turn_scores[0]
+            all_ifds.append(score.get("ifd"))
+            results.append({**item, "ifd": score.get("ifd"), "ifd_detail": score})
+
+    buffer.clear()
+
+
 def main():
     parser = argparse.ArgumentParser(
         description="Compute IFD scores for instruction-response data"
@@ -149,23 +424,34 @@ def main():
     parser.add_argument("--param_path", type=str, required=True, help="Model directory")
     parser.add_argument("--input", type=str, required=True, help="Input JSONL file")
     parser.add_argument("--output", type=str, required=True, help="Output JSONL file")
+    parser.add_argument("--max_len", type=int, default=2048, help="Max token length")
     parser.add_argument(
-        "--instr_key",
+        "--format",
         type=str,
-        default="instruction",
+        default="plain",
-        help="Key for instruction field",
+        choices=["plain", "messages"],
+        help="Input format",
     )
     parser.add_argument(
-        "--resp_key",
+        "--instr_key", type=str, default="instruction", help="Key for instruction field"
-        type=str,
-        default="response",
-        help="Key for response field",
     )
     parser.add_argument(
-        "--max_len",
+        "--resp_key", type=str, default="response", help="Key for response field"
-        type=int,
+    )
-        default=2048,
+    parser.add_argument(
-        help="Max token length (instruction truncated to fit)",
+        "--batch_size", type=int, default=8, help="Batch size for model forward passes"
+    )
+    parser.add_argument("--device", type=str, default=None, help="Device (e.g. cuda:0)")
+    parser.add_argument(
+        "--sentinel_text",
+        type=str,
+        default="\n",
+        help='Plain-text prefix for unconditional pass (default: "\\n"). Use "" for bos/pad fallback.',
+    )
+    parser.add_argument(
+        "--per_token",
+        action="store_true",
+        help="Include per-token IFD breakdown in output",
     )
     args = parser.parse_args()
 
@@ -176,6 +462,11 @@ def main():
         args.instr_key,
         args.resp_key,
         args.max_len,
+        data_format=args.format,
+        batch_size=args.batch_size,
+        device=args.device,
+        sentinel_text=args.sentinel_text,
+        per_token=args.per_token,
     )
 
 

scripts/eval/evaluate_ifeval.py

@@ -343,14 +343,20 @@ def verify_response(response: str, instruction_id: str, kwargs: dict) -> Optiona
 
 def generate_one(
     engine: InferenceEngine,
+    tokenizer: AutoTokenizer,
     prompt: str,
     max_tokens: int,
     temperature: float,
     top_p: float,
     top_k: int,
 ) -> str:
+    formatted = tokenizer.apply_chat_template(
+        [{"role": "user", "content": prompt}],
+        tokenize=False,
+        add_generation_prompt=True,
+    )
     output = engine.generate(
-        prompt=prompt,
+        prompt=formatted,
         stream=False,
         max_tokens=max_tokens,
         temperature=temperature,
@@ -364,6 +370,7 @@ def generate_one(
 
 def evaluate(
     engine: InferenceEngine,
+    tokenizer: AutoTokenizer,
     problems: List[dict],
     max_tokens: int,
     temperature: float,
@@ -385,7 +392,7 @@ def evaluate(
         samples = []
         for _ in range(num_samples):
             response = generate_one(
-                engine, prompt, max_tokens, temperature, top_p, top_k
+                engine, tokenizer, prompt, max_tokens, temperature, top_p, top_k
             )
             samples.append(response)
 
@@ -536,6 +543,7 @@ def main():
     model = AutoModel.from_pretrained(args.param_path)
     tokenizer = AutoTokenizer.from_pretrained(args.param_path)
     model.to(device="cuda", dtype=torch.bfloat16)
+    model.eval()
 
     engine = InferenceEngine(
         model=model,
@@ -545,6 +553,7 @@ def main():
 
     results = evaluate(
         engine=engine,
+        tokenizer=tokenizer,
         problems=problems,
         max_tokens=args.max_tokens,
         temperature=args.temperature,
@@ -562,7 +571,7 @@ def main():
     print(f"  Unsupported:    {summary['unsupported_constraints']}")
     print(f"{'=' * 60}")
 
-    print(f"\nPer-type accuracy:")
+    print("\nPer-type accuracy:")
     for inst_id, stats in sorted(summary["per_type_accuracy"].items()):
         print(
             f"  {inst_id:50s}  {stats['accuracy']:.2%}  "

scripts/eval/evaluate_ppl.py

@@ -86,7 +86,7 @@ def process_file(
 
 
 if __name__ == "__main__":
-    parser = argparse.ArgumentParser(description="Run perplexity with a Khaosz model.")
+    parser = argparse.ArgumentParser(description="Perplexity evaluation on JSONL text.")
     parser.add_argument(
         "--param_path", type=str, required=True, help="Path to the model directory."
     )

scripts/eval/evaluate_rouge.py

@@ -0,0 +1,153 @@
+"""ROUGE evaluation (manual implementation, no external deps).
+
+Computes ROUGE-1, ROUGE-2, ROUGE-L precision, recall, and F1.
+
+Usage::
+
+    # Batch evaluation from JSONL (each line: {"reference": ..., "candidate": ...})
+    python scripts/eval/evaluate_rouge.py --data_path preds.jsonl --output results.json
+
+    # As a library
+    from scripts.eval.evaluate_rouge import compute_rouge
+    scores = compute_rouge("the cat sat on the mat", "the cat sat")
+"""
+
+import argparse
+import json
+from collections import Counter
+from typing import Dict, List, Tuple
+
+
+def _tokenize(text: str) -> List[str]:
+    return text.split()
+
+
+def _ngrams(tokens: List[str], n: int) -> Counter:
+    return Counter(zip(*[tokens[i:] for i in range(n)]))
+
+
+def _lcs(x: List[str], y: List[str]) -> int:
+    m, n = len(x), len(y)
+    dp = [[0] * (n + 1) for _ in range(m + 1)]
+    for i in range(1, m + 1):
+        xi = x[i - 1]
+        dpi = dp[i]
+        dpi_1 = dp[i - 1]
+        for j in range(1, n + 1):
+            if xi == y[j - 1]:
+                dpi[j] = dpi_1[j - 1] + 1
+            else:
+                dpi[j] = dpi_1[j] if dpi_1[j] > dpi[j - 1] else dpi[j - 1]
+    return dp[m][n]
+
+
+def _f1(precision: float, recall: float) -> float:
+    if precision + recall == 0:
+        return 0.0
+    return 2 * precision * recall / (precision + recall)
+
+
+def _rouge_n(ref_tokens: List[str], cand_tokens: List[str], n: int) -> Dict[str, float]:
+    ref_ngrams = _ngrams(ref_tokens, n)
+    cand_ngrams = _ngrams(cand_tokens, n)
+
+    overlap = sum((cand_ngrams & ref_ngrams).values())
+    cand_total = sum(cand_ngrams.values())
+    ref_total = sum(ref_ngrams.values())
+
+    precision = overlap / cand_total if cand_total > 0 else 0.0
+    recall = overlap / ref_total if ref_total > 0 else 0.0
+    f1 = _f1(precision, recall)
+
+    return {"precision": precision, "recall": recall, "f1": f1}
+
+
+def _rouge_l(ref_tokens: List[str], cand_tokens: List[str]) -> Dict[str, float]:
+    lcs_len = _lcs(ref_tokens, cand_tokens)
+    ref_len = len(ref_tokens)
+    cand_len = len(cand_tokens)
+
+    recall = lcs_len / ref_len if ref_len > 0 else 0.0
+    precision = lcs_len / cand_len if cand_len > 0 else 0.0
+    f1 = _f1(precision, recall)
+
+    return {"precision": precision, "recall": recall, "f1": f1}
+
+
+def compute_rouge(
+    reference: str, candidate: str, n: int = 2
+) -> Dict[str, Dict[str, float]]:
+    """Compute ROUGE-N (1..n) and ROUGE-L scores.
+
+    Returns::
+
+        {
+            "rouge-1": {"precision": ..., "recall": ..., "f1": ...},
+            "rouge-2": {"precision": ..., "recall": ..., "f1": ...},
+            "rouge-l": {"precision": ..., "recall": ..., "f1": ...},
+        }
+    """
+    ref_tokens = _tokenize(reference)
+    cand_tokens = _tokenize(candidate)
+
+    results = {}
+    for i in range(1, n + 1):
+        results[f"rouge-{i}"] = _rouge_n(ref_tokens, cand_tokens, i)
+    results["rouge-l"] = _rouge_l(ref_tokens, cand_tokens)
+    return results
+
+
+def evaluate_file(data_path: str) -> Dict:
+    with open(data_path, "r", encoding="utf-8") as f:
+        pairs = [json.loads(line) for line in f if line.strip()]
+
+    agg = {
+        k: {"precision": 0.0, "recall": 0.0, "f1": 0.0}
+        for k in ("rouge-1", "rouge-2", "rouge-l")
+    }
+    per_item = []
+
+    for item in pairs:
+        ref = item["reference"]
+        cand = item["candidate"]
+        scores = compute_rouge(ref, cand)
+        per_item.append({**item, "scores": scores})
+        for k, v in scores.items():
+            agg[k]["precision"] += v["precision"]
+            agg[k]["recall"] += v["recall"]
+            agg[k]["f1"] += v["f1"]
+
+    n = len(pairs)
+    for k in agg:
+        agg[k] = {m: v / n for m, v in agg[k].items()}
+
+    return {"num_samples": n, "aggregate": agg, "per_item": per_item}
+
+
+def main():
+    parser = argparse.ArgumentParser(description="ROUGE evaluation")
+    parser.add_argument(
+        "--data_path", required=True, help="JSONL with reference/candidate per line"
+    )
+    parser.add_argument("--output", type=str, default=None, help="Output JSON path")
+    args = parser.parse_args()
+
+    results = evaluate_file(args.data_path)
+    agg = results["aggregate"]
+
+    print(f"Samples: {results['num_samples']}")
+    print()
+    for metric in ("rouge-1", "rouge-2", "rouge-l"):
+        s = agg[metric]
+        print(
+            f"  {metric:8s}  P={s['precision']:.4f}  R={s['recall']:.4f}  F1={s['f1']:.4f}"
+        )
+
+    if args.output:
+        with open(args.output, "w", encoding="utf-8") as f:
+            json.dump(results, f, indent=2, ensure_ascii=False)
+        print(f"\nSaved to {args.output}")
+
+
+if __name__ == "__main__":
+    main()

scripts/tools/generate.py

@@ -1,5 +1,6 @@
 import argparse
 import json
+from typing import Optional
 
 import torch
 
@@ -17,7 +18,7 @@ def processor(
     top_p: float,
     question_key: str,
     response_key: str,
-    max_tokens: int,
+    max_tokens: Optional[int],
     batch_size: int,
 ):
     # Load model and tokenizer
@@ -72,7 +73,7 @@ def processor(
 
 
 if __name__ == "__main__":
-    parser = argparse.ArgumentParser(description="Run generate with a Khaosz model.")
+    parser = argparse.ArgumentParser(description="Batch generation from JSONL file.")
 
     parser.add_argument(
         "--param_path", type=str, required=True, help="Path to the model directory."
@@ -93,36 +94,42 @@ if __name__ == "__main__":
         "--question_key",
         type=str,
         default="question",
-        help="Key for the question in the input JSON.",
+        help="Key for the question in the input JSON (default: question).",
     )
     parser.add_argument(
         "--response_key",
         type=str,
         default="response",
-        help="Key for the response in the output JSON.",
+        help="Key for the response in the output JSON (default: response).",
     )
     parser.add_argument(
         "--temperature",
         type=float,
         default=0.60,
-        help="Temperature for generating responses.",
+        help="Temperature for generating responses (default: 0.60).",
     )
     parser.add_argument(
-        "--top_k", type=int, default=30, help="Top-k value for generating responses."
+        "--top_k",
+        type=int,
+        default=30,
+        help="Top-k value for generating responses (default: 30).",
     )
     parser.add_argument(
         "--top_p",
         type=float,
         default=0.95,
-        help="Top-p value for generating responses.",
+        help="Top-p value for generating responses (default: 0.95).",
     )
     parser.add_argument(
-        "--batch_size", type=int, default=1, help="Batch size for generating responses."
+        "--batch_size",
+        type=int,
+        default=1,
+        help="Batch size for generating responses (default: 1).",
     )
     parser.add_argument(
         "--max_tokens",
         type=int,
-        default=2048,
+        default=None,
         help="Maximum tokens to generate (default: model config max_len).",
     )
 

scripts/tools/train.py

@@ -150,8 +150,8 @@ def parse_args() -> argparse.Namespace:
     parser.add_argument(
         "--metrics",
         nargs="*",
-        default=["loss", "lr"],
+        default=["loss", "lr", "grad_norm"],
-        help="Metrics to log (e.g. --metrics loss lr val_loss). Default: loss lr.",
+        help="Metrics to log (e.g. --metrics loss lr val_loss). Default: loss lr grad_norm.",
     )
     parser.add_argument(
         "--log_dir",
@@ -159,12 +159,6 @@ def parse_args() -> argparse.Namespace:
         default="checkpoint/logs",
         help="Directory for metric logs.",
     )
-    parser.add_argument(
-        "--log_interval",
-        type=int,
-        default=100,
-        help="Number of batch iterations between metric logs.",
-    )
     parser.add_argument(
         "--grpo_sync_interval",
         type=int,
@@ -175,7 +169,10 @@ def parse_args() -> argparse.Namespace:
         "--start_epoch", type=int, default=0, help="Start epoch for training."
     )
     parser.add_argument(
-        "--start_batch", type=int, default=0, help="Start batch for training."
+        "--start_samples",
+        type=int,
+        default=0,
+        help="Start samples (per rank) for training.",
     )
 
     parser.add_argument(
@@ -221,6 +218,44 @@ def parse_args() -> argparse.Namespace:
         help="NEFTune noise alpha (0=disabled, typical: 5.0).",
     )
 
+    parser.add_argument(
+        "--schedule_type",
+        type=str,
+        default="cosine",
+        choices=["cosine", "sgdr", "wsd"],
+        help="Learning rate scheduler type.",
+    )
+    parser.add_argument(
+        "--min_rate",
+        type=float,
+        default=None,
+        help="Minimum LR as fraction of base LR. Uses scheduler default if not set (cosine/sgdr: 0.05, wsd: 0.0).",
+    )
+    parser.add_argument(
+        "--cycle_length",
+        type=int,
+        default=None,
+        help="SGDR first cycle length in steps. Defaults to total_steps - warmup_steps.",
+    )
+    parser.add_argument(
+        "--t_mult",
+        type=int,
+        default=2,
+        help="SGDR cycle length multiplier per restart.",
+    )
+    parser.add_argument(
+        "--stable_steps",
+        type=int,
+        default=None,
+        help="WSD stable plateau steps. Required when --schedule_type wsd.",
+    )
+    parser.add_argument(
+        "--decay_steps",
+        type=int,
+        default=None,
+        help="WSD decay steps. Defaults to total_steps - warmup_steps - stable_steps.",
+    )
+
     args = parser.parse_args()
 
     return args
@@ -231,7 +266,20 @@ def create_model(config):
 
 
 def create_optimizer(model, **kwargs) -> optim.Optimizer:
-    return optim.AdamW(model.parameters(), fused=True, **kwargs)
+    decay_params = []
+    no_decay_params = []
+    for name, param in model.named_parameters():
+        if not param.requires_grad:
+            continue
+        if param.dim() < 2 or "norm" in name or "bias" in name:
+            no_decay_params.append(param)
+        else:
+            decay_params.append(param)
+    param_groups = [
+        {"params": decay_params, "weight_decay": kwargs.pop("weight_decay", 0.01)},
+        {"params": no_decay_params, "weight_decay": 0.0},
+    ]
+    return optim.AdamW(param_groups, fused=True, **kwargs)
 
 
 def create_scheduler(
@@ -266,7 +314,7 @@ def train(
     n_epoch: int,
     batch_per_device: int,
     start_epoch: int,
-    start_batch: int,
+    start_samples: int,
     grad_accum_steps: int,
     warmup_ratio: float,
     ckpt_interval: int,
@@ -275,7 +323,6 @@ def train(
     val_step: int,
     metrics: list[str],
     log_dir: str,
-    log_interval: int,
     dpo_beta: float,
     grpo_clip_eps: float,
     grpo_kl_coef: float,
@@ -300,6 +347,12 @@ def train(
     master_port: str,
     start_method: str,
     neftune_alpha: float,
+    schedule_type: str,
+    min_rate: float,
+    cycle_length: int,
+    t_mult: int,
+    stable_steps: int,
+    decay_steps: int,
 ):
     assert train_type in ["seq", "sft", "dpo", "grpo"]
     assert os.path.exists(param_path)
@@ -309,6 +362,7 @@ def train(
     # Load config
     config_path = os.path.join(param_path, "config.json")
     config = AutoRegressiveLMConfig.from_file(config_path)
+    config.neftune_alpha = neftune_alpha
 
     if window_size is None:
         window_size = config.max_len
@@ -348,14 +402,30 @@ def train(
         len(dataset), n_epoch, batch_per_device, nprocs, grad_accum_steps
     )
     warmup_steps = int(warmup_ratio * total_steps)
+    warmup_steps = min(warmup_steps, total_steps)
+
+    scheduler_kwargs = {"warmup_steps": warmup_steps}
+
+    if schedule_type == "cosine":
+        scheduler_kwargs["lr_decay_steps"] = total_steps - warmup_steps
+    elif schedule_type == "sgdr":
+        scheduler_kwargs["cycle_length"] = cycle_length or (total_steps - warmup_steps)
+        scheduler_kwargs["t_mult"] = t_mult
+    elif schedule_type == "wsd":
+        remaining = total_steps - warmup_steps
+        stable_steps_ = stable_steps or max(1, int(remaining * 0.8))
+        scheduler_kwargs["stable_steps"] = stable_steps_
+        scheduler_kwargs["decay_steps"] = max(
+            1, decay_steps or (remaining - stable_steps_)
+        )
+
+    if min_rate is not None:
+        scheduler_kwargs["min_rate"] = min_rate
 
     scheduler_fn = partial(
         create_scheduler,
-        **{
+        schedule_type=schedule_type,
-            "schedule_type": "cosine",
+        **scheduler_kwargs,
-            "warmup_steps": min(warmup_steps, total_steps),
-            "lr_decay_steps": total_steps - min(warmup_steps, total_steps),
-        },
     )
 
     grad_ckpt_modules = [DecoderBlock] if gradient_checkpointing else []
@@ -370,7 +440,7 @@ def train(
         n_epoch=n_epoch,
         batch_per_device=batch_per_device,
         start_epoch=start_epoch,
-        start_batch=start_batch,
+        start_samples=start_samples,
         ckpt_interval=ckpt_interval,
         grad_accum_steps=grad_accum_steps,
         max_grad_norm=max_grad_norm,
@@ -388,7 +458,6 @@ def train(
         val_step=val_step,
         metrics=metrics,
         log_dir=log_dir,
-        log_interval=log_interval,
         gradient_checkpointing_modules=grad_ckpt_modules,
         executor_kwargs=executor_kwargs,
         extra_kwargs=strategy_kwargs,

tests/conftest.py

@@ -75,7 +75,7 @@ class MultiTurnDataset(Dataset):
 
 
 class EarlyStoppingDataset(Dataset):
-    """Dataset that triggers early stopping after a specified number of iterations."""
+    """Dataset that triggers early stopping after consuming a specified number of samples."""
 
     def __init__(self, length=10, stop_after=5):
         self.length = length

tests/data/conftest.py

@@ -1,3 +1,5 @@
+import json
+import os
 import tempfile
 
 import pytest
@@ -8,6 +10,7 @@ from astrai.config.preprocess_config import (
     PipelineConfig,
     ProcessingConfig,
 )
+from astrai.preprocessing.builder import SectionedMaskBuilder
 from astrai.tokenize import AutoTokenizer
 
 _SPECIAL_TOKENS_CONFIG = {
@@ -200,3 +203,33 @@ def make_grpo_no_template_config():
         mask_default="mask",
         preprocessing=ProcessingConfig(max_seq_len=2048),
     )
+
+
+@pytest.fixture
+def builder():
+    return SectionedMaskBuilder()
+
+
+@pytest.fixture
+def tokenizer_dir(temp_dir, test_tokenizer):
+    d = os.path.join(temp_dir, "tok")
+    os.makedirs(d, exist_ok=True)
+    test_tokenizer._tokenizer.save(os.path.join(d, "tokenizer.json"))
+    with open(os.path.join(d, "tokenizer_config.json"), "w") as f:
+        json.dump(
+            {"special_tokens": {"pad_token": "<|_pad_|>", "unk_token": "<|_unk_|>"}}, f
+        )
+    return d
+
+
+@pytest.fixture
+def chat_tokenizer_dir(temp_dir, chat_tokenizer):
+    d = os.path.join(temp_dir, "tok")
+    os.makedirs(d, exist_ok=True)
+    chat_tokenizer._tokenizer.save(os.path.join(d, "tokenizer.json"))
+    with open(os.path.join(d, "tokenizer_config.json"), "w") as f:
+        json.dump(
+            {"special_tokens": _SPECIAL_TOKENS_CONFIG, "chat_template": _CHAT_TEMPLATE},
+            f,
+        )
+    return d

tests/data/test_checkpoint.py

@@ -25,7 +25,9 @@ def test_single_process():
 
         scheduler.step()
 
-    checkpoint = Checkpoint(state_dict=model.state_dict(), epoch=3, iteration=30)
+    checkpoint = Checkpoint(
+        state_dict=model.state_dict(), epoch=3, consumed_samples=120
+    )
 
     with tempfile.TemporaryDirectory() as tmpdir:
         checkpoint.save(tmpdir)
@@ -33,7 +35,7 @@ def test_single_process():
         loaded_checkpoint = Checkpoint.load(tmpdir)
 
         assert loaded_checkpoint.epoch == 3
-        assert loaded_checkpoint.iteration == 30
+        assert loaded_checkpoint.consumed_samples == 120
 
 
 def test_checkpoint_with_extra():
@@ -46,7 +48,10 @@ def test_checkpoint_with_extra():
         "scheduler": {"last_epoch": 5},
     }
     checkpoint = Checkpoint(
-        state_dict=model.state_dict(), epoch=1, iteration=10, extra=extra
+        state_dict=model.state_dict(),
+        epoch=1,
+        consumed_samples=40,
+        extra=extra,
     )
 
     with tempfile.TemporaryDirectory() as tmpdir:
@@ -77,7 +82,7 @@ def simple_training():
     checkpoint = Checkpoint(
         state_dict=model.state_dict(),
         epoch=2,
-        iteration=10,
+        consumed_samples=40,
     )
 
     rank = get_rank()

tests/data/test_dataset.py

@@ -1,42 +1,85 @@
+import json
 import os
 
 import numpy as np
 import pytest
 import torch
 
+from astrai.config.preprocess_config import PipelineConfig
 from astrai.dataset.dataset import DatasetFactory, SEQDataset
 from astrai.dataset.storage import (
     H5Store,
     StoreFactory,
     detect_format,
+)
+from astrai.serialization import (
     load_bin,
     save_bin,
     save_h5,
 )
 
 
+def _rand_seq(length, vocab=1000):
+    return torch.randint(0, vocab, (length,), dtype=torch.int64)
+
+
+def _save_test_tokenizer(test_dir, tokenizer):
+    tokenizer_path = os.path.join(test_dir, "tokenizer")
+    os.makedirs(tokenizer_path, exist_ok=True)
+    tokenizer.save_pretrained(tokenizer_path)
+    return tokenizer_path
+
+
+def _write_jsonl_dataset(test_dir, tokenizer_path, records, config_overrides=None):
+    data_dir = os.path.join(test_dir, "jsonl_data")
+    os.makedirs(data_dir, exist_ok=True)
+
+    with open(os.path.join(data_dir, "data.jsonl"), "w", encoding="utf-8") as f:
+        for record in records:
+            f.write(json.dumps(record, ensure_ascii=False) + "\n")
+
+    config = {
+        "tokenizer_path": tokenizer_path,
+        "version": 1,
+        "input": {"sections": [{"field": "text", "action": "train"}]},
+        "preprocessing": {"max_seq_len": 128},
+        "output": {"position_ids_mode": "continuous"},
+    }
+    if config_overrides:
+        config.update(config_overrides)
+
+    with open(
+        os.path.join(data_dir, "dataset_config.json"), "w", encoding="utf-8"
+    ) as f:
+        json.dump(config, f, ensure_ascii=False, indent=2)
+
+    return data_dir
+
+
+def _make_seq_dataset(
+    test_dir, name="data", seq_length=200, train_type="seq", data=None, **load_kwargs
+):
+    if data is None:
+        data = {"sequence": [_rand_seq(seq_length)]}
+    save_h5(test_dir, name, data)
+    return DatasetFactory.load(
+        train_type,
+        test_dir,
+        window_size=load_kwargs.pop("window_size", 64),
+        **load_kwargs,
+    )
+
+
 def test_dataset_loader_random_paths(base_test_env):
     """Test dataset loader with multiple random paths"""
     test_dir = base_test_env["test_dir"]
 
-    # Create multiple mmap dataset directories with random data
     num_files = np.random.randint(2, 5)
-
     for i in range(num_files):
         seq_length = np.random.randint(200, 400)
-        dummy_data = {
+        dummy_data = {"sequence": [_rand_seq(seq_length) for _ in range(10)]}
-            "sequence": [
+        loaded_dataset = _make_seq_dataset(
-                torch.randint(0, 1000, (seq_length,), dtype=torch.int64)
+            test_dir, f"data_{i}", seq_length, data=dummy_data
-                for _ in range(10)
-            ],
-        }
-        save_h5(test_dir, f"data_{i}", dummy_data)
-
-        # Test loading with multiple paths
-        loaded_dataset = DatasetFactory.load(
-            train_type="seq",
-            load_path=test_dir,
-            window_size=64,
         )
         assert loaded_dataset is not None
         assert len(loaded_dataset) > 0
@@ -54,23 +97,15 @@ def test_dpo_strategy_with_random_data(base_test_env):
     """Test DPO strategy with randomized preference data"""
     test_dir = base_test_env["test_dir"]
 
-    # Create DPO-style data with memory mapping format
     seq_length = np.random.randint(100, 200)
-
     dummy_data = {
-        "chosen": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "chosen": [_rand_seq(seq_length)],
-        "rejected": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "rejected": [_rand_seq(seq_length)],
         "chosen_mask": [torch.ones(seq_length, dtype=torch.bool)],
         "rejected_mask": [torch.ones(seq_length, dtype=torch.bool)],
     }
-
+    dpo_dataset = _make_seq_dataset(
-    save_h5(test_dir, "dpo_data", dummy_data)
+        test_dir, "dpo_data", seq_length, train_type="dpo", data=dummy_data
-
-    # Load DPO dataset
-    dpo_dataset = DatasetFactory.load(
-        train_type="dpo",
-        load_path=test_dir,
-        window_size=64,
     )
 
     assert dpo_dataset is not None
@@ -92,22 +127,14 @@ def test_sft_dataset_with_random_data(base_test_env):
     """Test SFT dataset with random data"""
     test_dir = base_test_env["test_dir"]
 
-    # Create SFT-style data with memory mapping format
     seq_length = np.random.randint(100, 200)
-
     dummy_data = {
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+        "sequence": [_rand_seq(seq_length)],
         "loss_mask": [torch.ones(seq_length, dtype=torch.bool)],
         "position_ids": [torch.arange(seq_length, dtype=torch.int32)],
     }
-
+    sft_dataset = _make_seq_dataset(
-    save_h5(test_dir, "sft_data", dummy_data)
+        test_dir, "sft_data", seq_length, train_type="sft", data=dummy_data
-
-    # Load SFT dataset
-    sft_dataset = DatasetFactory.load(
-        train_type="sft",
-        load_path=test_dir,
-        window_size=64,
     )
 
     assert sft_dataset is not None
@@ -128,25 +155,11 @@ def test_dataset_with_custom_stride(base_test_env):
     """Test dataset with custom stride parameter"""
     test_dir = base_test_env["test_dir"]
 
-    # Create test data
-    seq_length = 200
-    dummy_data = {
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
-    }
-
-    save_h5(test_dir, "stride_test_data", dummy_data)
-
-    # Test with custom stride
     custom_stride = 32
-    dataset = DatasetFactory.load(
+    dataset = _make_seq_dataset(test_dir, "stride_test_data", stride=custom_stride)
-        train_type="seq", load_path=test_dir, window_size=64, stride=custom_stride
-    )
-
     assert dataset is not None
     assert len(dataset) > 0
 
-    # With stride 32 and window 64 on 200 length data, we should get more samples
-    # than with default stride (which equals window size)
     default_stride_dataset = DatasetFactory.load(
         train_type="seq",
         load_path=test_dir,
@@ -157,25 +170,11 @@ def test_dataset_with_custom_stride(base_test_env):
 
 
 def test_dataset_count_property(base_test_env):
-    """Test the count property returns correct raw token count"""
     test_dir = base_test_env["test_dir"]
-
+    dataset = _make_seq_dataset(test_dir, "count_test_data")
-    seq_length = 200
+    assert dataset.count == 200
-    dummy_data = {
+    assert dataset.count > len(dataset)
-        "sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)],
+    assert len(dataset) == (200 - 1 - 64) // 64 + 1
-    }
-
-    save_h5(test_dir, "count_test_data", dummy_data)
-
-    dataset = DatasetFactory.load(
-        train_type="seq",
-        load_path=test_dir,
-        window_size=64,
-    )
-
-    assert dataset.count == seq_length
-    assert dataset.count > len(dataset)  # raw tokens > windows
-    assert len(dataset) == (seq_length - 1 - 64) // 64 + 1
 
 
 def test_empty_dataset_count():
@@ -186,17 +185,10 @@ def test_empty_dataset_count():
 
 
 def test_dataset_too_short_for_window(base_test_env):
-    """Dataset shorter than window_size returns __len__ == 0"""
     test_dir = base_test_env["test_dir"]
-    seq_length = 30
+    dataset = _make_seq_dataset(test_dir, "short", seq_length=30)
-    save_h5(
-        test_dir,
-        "short",
-        {"sequence": [torch.randint(0, 1000, (seq_length,), dtype=torch.int64)]},
-    )
-    dataset = DatasetFactory.load("seq", test_dir, window_size=64)
     assert len(dataset) == 0
-    assert dataset.count == seq_length
+    assert dataset.count == 30
 
 
 def test_unloaded_dataset_getitem_raises():
@@ -220,12 +212,8 @@ def test_store_unloaded_len():
 
 
 def test_store_fetch_begin_equals_end(base_test_env):
-    """Store.fetch with begin == end returns empty tensor"""
     test_dir = base_test_env["test_dir"]
-    dummy = {"sequence": [torch.randint(0, 1000, (100,), dtype=torch.int64)]}
+    dataset = _make_seq_dataset(test_dir, "empty_fetch", seq_length=100, window_size=32)
-    save_h5(test_dir, "empty_fetch", dummy)
-
-    dataset = DatasetFactory.load("seq", test_dir, window_size=32)
     result = dataset.storage.fetch(10, 10, "sequence")
     assert result.numel() == 0
 
@@ -299,12 +287,8 @@ def test_save_load_bin_roundtrip(base_test_env):
 
 
 def test_mmap_store_load_and_fetch(base_test_env):
-    """MmapStore loads bin data and fetches correctly"""
     test_dir = base_test_env["test_dir"]
-
+    data = {"sequence": [_rand_seq(200)]}
-    data = {
-        "sequence": [torch.randint(0, 1000, (200,), dtype=torch.int64)],
-    }
     save_bin(test_dir, data)
 
     store = StoreFactory.create("bin")
@@ -317,14 +301,9 @@ def test_mmap_store_load_and_fetch(base_test_env):
 
 
 def test_mmap_dataset_load(base_test_env):
-    """DatasetFactory.load auto-detects bin format"""
     test_dir = base_test_env["test_dir"]
-
+    data = {"sequence": [_rand_seq(200)]}
-    data = {
-        "sequence": [torch.randint(0, 1000, (200,), dtype=torch.int64)],
-    }
     save_bin(test_dir, data)
-
     dataset = DatasetFactory.load("seq", test_dir, window_size=64)
     assert len(dataset) > 0
     assert dataset.count == 200
@@ -348,19 +327,16 @@ def test_normalize_mixed_empty_key():
 
 
 def test_grpo_dataset_dtype(base_test_env):
-    """GRPODataset returns correct dtypes"""
     test_dir = base_test_env["test_dir"]
-
+    dummy_data = {
-    seq_len = 100
+        "prompts": [torch.randint(0, 100, (100,), dtype=torch.int32)],
-    data = {
+        "responses": [torch.randint(0, 100, (100,), dtype=torch.int32)],
-        "prompts": [torch.randint(0, 100, (seq_len,), dtype=torch.int32)],
+        "masks": [torch.ones(100, dtype=torch.int32)],
-        "responses": [torch.randint(0, 100, (seq_len,), dtype=torch.int32)],
+        "rewards": [torch.ones(100, dtype=torch.float32)],
-        "masks": [torch.ones(seq_len, dtype=torch.int32)],
-        "rewards": [torch.ones(seq_len, dtype=torch.float32)],
     }
-    save_h5(test_dir, "grpo_dtype", data)
+    dataset = _make_seq_dataset(
-
+        test_dir, "grpo_dtype", train_type="grpo", data=dummy_data, window_size=32
-    dataset = DatasetFactory.load("grpo", test_dir, window_size=32)
+    )
     item = dataset[0]
 
     assert item["prompts"].dtype == torch.long
@@ -370,18 +346,16 @@ def test_grpo_dataset_dtype(base_test_env):
 
 
 def test_grpo_dataset_load(base_test_env):
-    """GRPODataset loads and returns correct keys"""
     test_dir = base_test_env["test_dir"]
-    seq_len = 200
+    dummy_data = {
-    data = {
+        "prompts": [_rand_seq(200)],
-        "prompts": [torch.randint(0, 1000, (seq_len,), dtype=torch.int64)],
+        "responses": [_rand_seq(200)],
-        "responses": [torch.randint(0, 1000, (seq_len,), dtype=torch.int64)],
+        "masks": [torch.ones(200, dtype=torch.int64)],
-        "masks": [torch.ones(seq_len, dtype=torch.int64)],
+        "rewards": [torch.rand(200, dtype=torch.float32)],
-        "rewards": [torch.rand(seq_len, dtype=torch.float32)],
     }
-    save_h5(test_dir, "grpo_test", data)
+    dataset = _make_seq_dataset(
-
+        test_dir, "grpo_test", train_type="grpo", data=dummy_data
-    dataset = DatasetFactory.load("grpo", test_dir, window_size=64)
+    )
     assert len(dataset) > 0
     item = dataset[0]
     assert "prompts" in item
@@ -400,7 +374,6 @@ def test_detect_format_bin_dir(base_test_env):
 
 
 def test_store_fetch_multi_key(base_test_env):
-    """Store.fetch with List[str] returns Dict[str, Tensor]"""
     test_dir = base_test_env["test_dir"]
     save_h5(
         test_dir,
@@ -410,7 +383,6 @@ def test_store_fetch_multi_key(base_test_env):
             "loss_mask": [torch.ones(100, dtype=torch.int64)],
         },
     )
-
     store = StoreFactory.create("h5")
     store.load(test_dir)
     result = store.fetch(10, 20, ["sequence", "loss_mask"])
@@ -420,10 +392,8 @@ def test_store_fetch_multi_key(base_test_env):
 
 
 def test_store_fetch_out_of_bounds(base_test_env):
-    """Store.fetch raises ValueError for out-of-bounds indices"""
     test_dir = base_test_env["test_dir"]
     save_h5(test_dir, "bounds", {"sequence": [torch.randint(0, 100, (50,))]})
-
     store = StoreFactory.create("h5")
     store.load(test_dir)
     with pytest.raises(ValueError, match="out of bounds"):
@@ -435,10 +405,110 @@ def test_store_fetch_out_of_bounds(base_test_env):
 
 
 def test_dataset_load_explicit_storage_type(base_test_env):
-    """DatasetFactory.load with explicit storage_type bypasses auto-detect"""
     test_dir = base_test_env["test_dir"]
-    save_h5(test_dir, "explicit", {"sequence": [torch.randint(0, 100, (200,))]})
+    dataset = _make_seq_dataset(test_dir, "explicit", storage_type="h5")
-
-    dataset = DatasetFactory.load("seq", test_dir, window_size=64, storage_type="h5")
     assert len(dataset) > 0
     assert dataset.count == 200
+
+
+def test_detect_format_jsonl_dir(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer_path = _save_test_tokenizer(test_dir, base_test_env["tokenizer"])
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [{"text": "hello world"}, {"text": "foo bar baz"}],
+    )
+    assert detect_format(data_dir) == "jsonl"
+
+
+def test_jsonl_store_seq(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer_path = _save_test_tokenizer(test_dir, base_test_env["tokenizer"])
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [{"text": "hello world"}, {"text": "foo bar baz qux"}],
+        config_overrides={"preprocessing": {"max_seq_len": 128, "min_chars": 0}},
+    )
+
+    store = StoreFactory.create("jsonl")
+    store.load(data_dir)
+    assert len(store) > 0
+    assert "sequence" in store.keys
+
+    dataset = DatasetFactory.load("seq", data_dir, window_size=8)
+    assert len(dataset) > 0
+    item = dataset[0]
+    assert "input_ids" in item
+    assert "target_ids" in item
+    assert item["input_ids"].dtype == torch.long
+
+
+def test_jsonl_store_sft(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    tokenizer = base_test_env["tokenizer"]
+    tokenizer.set_chat_template(
+        "{% for message in messages %}{{ message['role'] }}:{{ message['content'] }}\n{% endfor %}"
+    )
+    tokenizer_path = _save_test_tokenizer(test_dir, tokenizer)
+    data_dir = _write_jsonl_dataset(
+        test_dir,
+        tokenizer_path,
+        [
+            {
+                "messages": [
+                    {"role": "system", "content": "sys"},
+                    {"role": "user", "content": "hi"},
+                    {"role": "assistant", "content": "hello"},
+                ]
+            }
+        ],
+        config_overrides={
+            "input": {
+                "sections": [{"field": "messages", "action": "$role", "template": True}]
+            },
+            "mask": {"system": "mask", "user": "mask", "assistant": "train"},
+            "mask_default": "mask",
+        },
+    )
+
+    store = StoreFactory.create("jsonl")
+    store.load(data_dir)
+    assert "sequence" in store.keys
+    assert "loss_mask" in store.keys
+    assert "position_ids" in store.keys
+
+    dataset = DatasetFactory.load("sft", data_dir, window_size=8)
+    item = dataset[0]
+    assert "input_ids" in item
+    assert "target_ids" in item
+    assert "loss_mask" in item
+    assert "position_ids" in item
+    assert item["loss_mask"].dtype == torch.bool
+
+
+def test_jsonl_store_pipeline_config_roundtrip(base_test_env):
+    test_dir = base_test_env["test_dir"]
+    config_path = os.path.join(test_dir, "dataset_config.json")
+    with open(config_path, "w", encoding="utf-8") as f:
+        json.dump(
+            {
+                "tokenizer_path": os.path.join(test_dir, "tokenizer"),
+                "version": 1,
+                "input": {"sections": [{"field": "text", "action": "train"}]},
+                "mask": {"assistant": "train"},
+                "preprocessing": {"max_seq_len": 64},
+                "output": {"position_ids_mode": "doc_reset"},
+            },
+            f,
+            ensure_ascii=False,
+            indent=2,
+        )
+
+    with open(config_path, "r", encoding="utf-8") as f:
+        raw = json.load(f)
+    raw.pop("tokenizer_path")
+    config = PipelineConfig.from_dict(raw)
+    assert config.output.position_ids_mode == "doc_reset"
+    assert config.preprocessing.max_seq_len == 64

tests/data/test_preprocess_builder.py

@@ -1,3 +1,5 @@
+import pytest
+
 from astrai.config.preprocess_config import (
     InputConfig,
     OutputConfig,
@@ -20,9 +22,8 @@ from tests.data.conftest import (
 )
 
 
-def test_chat_simple(chat_tokenizer):
+def test_chat_simple(chat_tokenizer, builder):
     config = make_chat_config()
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {"role": "system", "content": "You are helpful."},
@@ -46,9 +47,8 @@ def test_chat_simple(chat_tokenizer):
     assert trained < total
 
 
-def test_chat_mask_only_assistant(chat_tokenizer):
+def test_chat_mask_only_assistant(chat_tokenizer, builder):
     config = make_chat_config()
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {"role": "user", "content": "What is 2+2?"},
@@ -66,14 +66,22 @@ def test_chat_mask_only_assistant(chat_tokenizer):
     assert len(masked) > 0
 
 
-def test_chat_all_masked(chat_tokenizer):
+@pytest.mark.parametrize(
+    "mask_rules,mask_default,expect_nonzero",
+    [
+        ({"system": "mask", "user": "mask", "assistant": "mask"}, "mask", False),
+        ({}, "train", True),
+    ],
+)
+def test_chat_uniform_masking(
+    mask_rules, mask_default, expect_nonzero, chat_tokenizer, builder
+):
     config = PipelineConfig(
         input=InputConfig(sections=_CHAT_SECTIONS),
-        mask={"system": "mask", "user": "mask", "assistant": "mask"},
+        mask=mask_rules,
-        mask_default="mask",
+        mask_default=mask_default,
         preprocessing=ProcessingConfig(max_seq_len=2048),
     )
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {"role": "system", "content": "You are helpful."},
@@ -81,35 +89,20 @@ def test_chat_all_masked(chat_tokenizer):
         ]
     }
     result = builder.build(item, config, chat_tokenizer)
-    assert sum(result["loss_mask"]) == 0
+    masked_count = sum(result["loss_mask"])
+    if expect_nonzero:
+        assert masked_count > 0
+    else:
+        assert masked_count == 0
 
 
-def test_chat_all_trained(chat_tokenizer):
+def test_chat_empty_messages(chat_tokenizer, builder):
-    config = PipelineConfig(
-        input=InputConfig(sections=_CHAT_SECTIONS),
-        mask={},
-        mask_default="train",
-        preprocessing=ProcessingConfig(max_seq_len=2048),
-    )
-    builder = SectionedMaskBuilder()
-    item = {
-        "messages": [
-            {"role": "system", "content": "You are helpful."},
-            {"role": "assistant", "content": "Hi there!"},
-        ]
-    }
-    result = builder.build(item, config, chat_tokenizer)
-    assert sum(result["loss_mask"]) == len(result["sequence"]) - 1
-
-
-def test_chat_empty_messages(chat_tokenizer):
     config = make_chat_config()
-    builder = SectionedMaskBuilder()
     assert builder.build({"messages": []}, config, chat_tokenizer) is None
     assert builder.build({}, config, chat_tokenizer) is None
 
 
-def test_chat_domain_extraction(chat_tokenizer):
+def test_chat_domain_extraction(chat_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_CHAT_SECTIONS),
         mask={"assistant": "train"},
@@ -117,7 +110,6 @@ def test_chat_domain_extraction(chat_tokenizer):
         preprocessing=ProcessingConfig(max_seq_len=2048),
         output=OutputConfig(domain_key="source"),
     )
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {"role": "user", "content": "Hi"},
@@ -129,14 +121,13 @@ def test_chat_domain_extraction(chat_tokenizer):
     assert result["domain"] == "wiki"
 
 
-def test_chat_truncation(chat_tokenizer):
+def test_chat_truncation(chat_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_CHAT_SECTIONS),
         mask={"assistant": "train"},
         mask_default="mask",
         preprocessing=ProcessingConfig(max_seq_len=10),
     )
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {
@@ -151,18 +142,16 @@ def test_chat_truncation(chat_tokenizer):
     assert len(result["loss_mask"]) == len(result["sequence"])
 
 
-def test_instruction_basic(test_tokenizer):
+def test_instruction_basic(test_tokenizer, builder):
     config = make_instruction_config()
-    builder = SectionedMaskBuilder()
     item = {"prompt": "Translate to French: Hello", "response": "Bonjour"}
     result = builder.build(item, config, test_tokenizer)
     assert result is not None
     assert len(result["sequence"]) == len(result["loss_mask"])
 
 
-def test_instruction_prompt_masked(test_tokenizer):
+def test_instruction_prompt_masked(test_tokenizer, builder):
     config = make_instruction_config()
-    builder = SectionedMaskBuilder()
     item = {"prompt": "hello", "response": "world"}
     result = builder.build(item, config, test_tokenizer)
     mask = result["loss_mask"]
@@ -175,7 +164,7 @@ def test_instruction_prompt_masked(test_tokenizer):
         assert all(m == 1 for m in mask[p_len:])
 
 
-def test_instruction_train_on_prompt(test_tokenizer):
+def test_instruction_train_on_prompt(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(
             sections=[
@@ -185,7 +174,6 @@ def test_instruction_train_on_prompt(test_tokenizer):
         ),
         preprocessing=ProcessingConfig(max_seq_len=2048),
     )
-    builder = SectionedMaskBuilder()
     item = {"prompt": "hello", "response": "world"}
     result = builder.build(item, config, test_tokenizer)
     mask = result["loss_mask"]
@@ -196,9 +184,8 @@ def test_instruction_train_on_prompt(test_tokenizer):
     assert all(m == 1 for m in mask[:p_len])
 
 
-def test_text_basic(test_tokenizer):
+def test_text_basic(test_tokenizer, builder):
     config = make_text_config()
-    builder = SectionedMaskBuilder()
     item = {"text": "Hello world. This is a test document."}
     result = builder.build(item, config, test_tokenizer)
     assert result is not None
@@ -207,41 +194,37 @@ def test_text_basic(test_tokenizer):
     assert "loss_mask" not in result
 
 
-def test_text_empty(test_tokenizer):
+def test_text_empty(test_tokenizer, builder):
     config = make_text_config()
-    builder = SectionedMaskBuilder()
     assert builder.build({"text": ""}, config, test_tokenizer) is None
     assert builder.build({"text": "   "}, config, test_tokenizer) is None
 
 
-def test_text_too_short(test_tokenizer):
+def test_text_too_short(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_TEXT_SECTIONS),
         preprocessing=ProcessingConfig(min_chars=100),
     )
-    builder = SectionedMaskBuilder()
     assert builder.build({"text": "short"}, config, test_tokenizer) is None
 
 
-def test_text_truncation(test_tokenizer):
+def test_text_truncation(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_TEXT_SECTIONS),
         preprocessing=ProcessingConfig(max_seq_len=3, min_chars=1),
     )
-    builder = SectionedMaskBuilder()
     item = {"text": "This is a very long text that should be truncated"}
     result = builder.build(item, config, test_tokenizer)
     assert len(result["sequence"]) <= 3
 
 
-def test_sectioned_chat(chat_tokenizer):
+def test_sectioned_chat(chat_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_CHAT_SECTIONS),
         mask={"system": "mask", "user": "mask", "assistant": "train"},
         mask_default="mask",
         preprocessing=ProcessingConfig(max_seq_len=2048),
     )
-    builder = SectionedMaskBuilder()
     item = {
         "messages": [
             {"role": "user", "content": "What is 2+2?"},
@@ -255,12 +238,11 @@ def test_sectioned_chat(chat_tokenizer):
     assert 0 in result["loss_mask"]
 
 
-def test_sectioned_instruction(test_tokenizer):
+def test_sectioned_instruction(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_INSTRUCTION_SECTIONS),
         preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=0),
     )
-    builder = SectionedMaskBuilder()
     item = {"prompt": "Q: Why?", "response": "A: Because."}
     result = builder.build(item, config, test_tokenizer)
     assert result is not None
@@ -269,24 +251,22 @@ def test_sectioned_instruction(test_tokenizer):
     assert mask[-1] == 1
 
 
-def test_sectioned_text(test_tokenizer):
+def test_sectioned_text(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_TEXT_SECTIONS),
         preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=1),
     )
-    builder = SectionedMaskBuilder()
     item = {"text": "Hello world, this is a test."}
     result = builder.build(item, config, test_tokenizer)
     assert result is not None
     assert "loss_mask" not in result
 
 
-def test_sectioned_text_too_short(test_tokenizer):
+def test_sectioned_text_too_short(test_tokenizer, builder):
     config = PipelineConfig(
         input=InputConfig(sections=_TEXT_SECTIONS),
         preprocessing=ProcessingConfig(max_seq_len=2048, min_chars=100),
     )
-    builder = SectionedMaskBuilder()
     assert builder.build({"text": "short"}, config, test_tokenizer) is None
 
 
@@ -296,13 +276,12 @@ def test_factory_registered():
 
 
 def test_factory_create():
-    builder = MaskBuilderFactory.create("sectioned")
+    builder_obj = MaskBuilderFactory.create("sectioned")
-    assert isinstance(builder, SectionedMaskBuilder)
+    assert isinstance(builder_obj, SectionedMaskBuilder)
 
 
-def test_dpo_chat_basic(chat_tokenizer):
+def test_dpo_chat_basic(chat_tokenizer, builder):
     config = make_dpo_chat_config()
-    builder = SectionedMaskBuilder()
     item = {
         "chosen": [
             {"role": "user", "content": "What is 2+2?"},
@@ -319,16 +298,14 @@ def test_dpo_chat_basic(chat_tokenizer):
     assert "rejected" in result
     assert "chosen_mask" in result
     assert "rejected_mask" in result
-    assert "domain" in result
     assert len(result["chosen"]) == len(result["chosen_mask"])
     assert len(result["rejected"]) == len(result["rejected_mask"])
     assert sum(result["chosen_mask"]) > 0
     assert sum(result["rejected_mask"]) > 0
 
 
-def test_dpo_chosen_only_trained(chat_tokenizer):
+def test_dpo_chosen_only_trained(chat_tokenizer, builder):
     config = make_dpo_chat_config()
-    builder = SectionedMaskBuilder()
     item = {
         "chosen": [
             {"role": "user", "content": "Hi"},
@@ -346,15 +323,13 @@ def test_dpo_chosen_only_trained(chat_tokenizer):
     assert 1 in result["rejected_mask"]
 
 
-def test_dpo_missing_field_is_none(chat_tokenizer):
+def test_dpo_missing_field_is_none(chat_tokenizer, builder):
     config = make_dpo_chat_config()
-    builder = SectionedMaskBuilder()
     assert builder.build({"chosen": [], "rejected": []}, config, chat_tokenizer) is None
 
 
-def test_grpo_basic(chat_tokenizer):
+def test_grpo_basic(chat_tokenizer, builder):
     config = make_grpo_config()
-    builder = SectionedMaskBuilder()
     item = {
         "prompt": [{"role": "user", "content": "What is 2+2?"}],
         "responses": ["4", "The answer is four", "Four", "2+2=4"],
@@ -370,9 +345,8 @@ def test_grpo_basic(chat_tokenizer):
     assert result["rewards"] == [1.0, 0.5, 0.8, 0.2]
 
 
-def test_grpo_response_tokens_all_trained(chat_tokenizer):
+def test_grpo_response_tokens_all_trained(chat_tokenizer, builder):
     config = make_grpo_config()
-    builder = SectionedMaskBuilder()
     item = {
         "prompt": [{"role": "user", "content": "Q"}],
         "responses": ["A", "B"],
@@ -384,9 +358,8 @@ def test_grpo_response_tokens_all_trained(chat_tokenizer):
     assert len(masks) == len(result["responses"])
 
 
-def test_grpo_single_reward(chat_tokenizer):
+def test_grpo_single_reward(chat_tokenizer, builder):
     config = make_grpo_config()
-    builder = SectionedMaskBuilder()
     item = {
         "prompt": [{"role": "user", "content": "Q"}],
         "responses": ["A"],

tests/data/test_preprocess_pipeline.py

@@ -10,9 +10,7 @@ from astrai.config.preprocess_config import (
 from astrai.preprocessing.pipeline import Pipeline, filter_by_length
 from tests.data.conftest import (
     _CHAT_SECTIONS,
-    _CHAT_TEMPLATE,
     _INSTRUCTION_SECTIONS,
-    _SPECIAL_TOKENS_CONFIG,
     _TEXT_SECTIONS,
     make_dpo_chat_config,
     make_grpo_no_template_config,
@@ -26,19 +24,7 @@ def test_filter_by_length():
     assert filter_by_length("just right", min_len=5, max_len=20)
 
 
-def test_full_chat_pipeline(temp_dir, chat_tokenizer):
+def test_full_chat_pipeline(temp_dir, chat_tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    chat_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": _SPECIAL_TOKENS_CONFIG,
-                "chat_template": _CHAT_TEMPLATE,
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "chat.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(
@@ -78,7 +64,7 @@ def test_full_chat_pipeline(temp_dir, chat_tokenizer):
         config=config,
         input_paths=[jsonl_path],
         output_dir=out_dir,
-        tokenizer_path=tokenizer_dir,
+        tokenizer_path=chat_tokenizer_dir,
     ).run()
 
     meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
@@ -91,21 +77,7 @@ def test_full_chat_pipeline(temp_dir, chat_tokenizer):
     assert meta["loss_mask"]["dtype"] == "int32"
 
 
-def test_full_text_pipeline(temp_dir, test_tokenizer):
+def test_full_text_pipeline(temp_dir, tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    test_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": {
-                    "pad_token": "<|_pad_|>",
-                    "unk_token": "<|_unk_|>",
-                }
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "text.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(
@@ -145,24 +117,9 @@ def test_full_text_pipeline(temp_dir, test_tokenizer):
         meta = json.load(f)
     assert "sequence" in meta
     assert "loss_mask" not in meta
-    assert meta["sequence"]["dtype"] == "int32"
 
 
-def test_full_instruction_pipeline(temp_dir, test_tokenizer):
+def test_full_instruction_pipeline(temp_dir, tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    test_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": {
-                    "pad_token": "<|_pad_|>",
-                    "unk_token": "<|_unk_|>",
-                }
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "instruct.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(
@@ -206,25 +163,9 @@ def test_full_instruction_pipeline(temp_dir, test_tokenizer):
         meta = json.load(f)
     assert "sequence" in meta
     assert "loss_mask" in meta
-    assert meta["sequence"]["dtype"] == "int32"
-    assert meta["loss_mask"]["dtype"] == "int32"
 
 
-def test_dtype_override(temp_dir, test_tokenizer):
+def test_dtype_override(temp_dir, tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    test_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": {
-                    "pad_token": "<|_pad_|>",
-                    "unk_token": "<|_unk_|>",
-                }
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "data.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(json.dumps({"prompt": "Q", "response": "A"}) + "\n")
@@ -252,19 +193,7 @@ def test_dtype_override(temp_dir, test_tokenizer):
     assert meta["loss_mask"]["dtype"] == "bool"
 
 
-def test_dpo_pipeline(temp_dir, chat_tokenizer):
+def test_dpo_pipeline(temp_dir, chat_tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    chat_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": _SPECIAL_TOKENS_CONFIG,
-                "chat_template": _CHAT_TEMPLATE,
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "dpo.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(
@@ -288,7 +217,7 @@ def test_dpo_pipeline(temp_dir, chat_tokenizer):
         config=make_dpo_chat_config(),
         input_paths=[jsonl_path],
         output_dir=out_dir,
-        tokenizer_path=tokenizer_dir,
+        tokenizer_path=chat_tokenizer_dir,
     ).run()
 
     meta_path = os.path.join(out_dir, "__default__", "shard_0000", "meta.json")
@@ -302,21 +231,7 @@ def test_dpo_pipeline(temp_dir, chat_tokenizer):
     assert "sequence" not in meta
 
 
-def test_grpo_pipeline(temp_dir, test_tokenizer):
+def test_grpo_pipeline(temp_dir, tokenizer_dir):
-    tokenizer_dir = os.path.join(temp_dir, "tok")
-    os.makedirs(tokenizer_dir, exist_ok=True)
-    test_tokenizer._tokenizer.save(os.path.join(tokenizer_dir, "tokenizer.json"))
-    with open(os.path.join(tokenizer_dir, "tokenizer_config.json"), "w") as f:
-        json.dump(
-            {
-                "special_tokens": {
-                    "pad_token": "<|_pad_|>",
-                    "unk_token": "<|_unk_|>",
-                }
-            },
-            f,
-        )
-
     jsonl_path = os.path.join(temp_dir, "grpo.jsonl")
     with open(jsonl_path, "w", encoding="utf-8") as f:
         f.write(

tests/inference/test_cache.py

@@ -4,7 +4,7 @@ import torch
 
 from astrai.inference import (
     Allocator,
-    KVCache,
+    PageCache,
     PagePool,
     PrefixCache,
     Storage,
@@ -161,7 +161,7 @@ def test_task_table_pop():
 
 
 def test_kv_cache_task_extend_allocates():
-    cache = KVCache(
+    cache = PageCache(
         n_layers=1,
         n_pages=8,
         page_size=64,
@@ -177,7 +177,7 @@ def test_kv_cache_task_extend_allocates():
 
 
 def test_kv_cache_task_extend_fails_when_pool_full():
-    cache = KVCache(
+    cache = PageCache(
         n_layers=1,
         n_pages=2,
         page_size=64,

tests/inference/test_tool_parser.py

@@ -13,65 +13,26 @@ from astrai.inference.api.tool_parser import (
 )
 
 
-def test_scan_complete_simple():
+@pytest.mark.parametrize(
-    end, complete = _scan_json('{"key": "value"}', 0)
+    "text,expected_complete,check_end_eq_len",
-    assert complete is True
+    [
-    assert end == len('{"key": "value"}')
+        ('{"key": "value"}', True, True),
-
+        ('{"outer": {"inner": 1}}', True, True),
-
+        ('{"key": "value"', False, False),
-def test_scan_complete_nested():
+        ('{"outer": {"inner": 1}', False, False),
-    text = '{"outer": {"inner": 1}}'
+        ('{"key": "a{b}c"} extra', True, False),
+        (r'{"key": "a\"b"}', True, False),
+        ('{"a": {"b": {"c": {"d": {"e": 5}}}}}', True, True),
+        ('{"items": [{"x": 1}, {"x": 2}]}', True, True),
+        ('{"fn": "function() { return 1; }"}', True, False),
+        ('{"key": "\u5317\u4eac"}', True, False),
+    ],
+)
+def test_scan_json(text, expected_complete, check_end_eq_len):
     end, complete = _scan_json(text, 0)
-    assert complete is True
+    assert complete is expected_complete
-    assert end == len(text)
+    if check_end_eq_len:
-
+        assert end == len(text)
-
-def test_scan_incomplete_unclosed():
-    end, complete = _scan_json('{"key": "value"', 0)
-    assert complete is False
-
-
-def test_scan_incomplete_nested():
-    end, complete = _scan_json('{"outer": {"inner": 1}', 0)
-    assert complete is False
-
-
-def test_scan_string_braces_ignored():
-    text = '{"key": "a{b}c"} extra'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
-
-
-def test_scan_escaped_quote_ignored():
-    text = r'{"key": "a\"b"}'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
-
-
-def test_scan_deeply_nested():
-    text = '{"a": {"b": {"c": {"d": {"e": 5}}}}}'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
-    assert end == len(text)
-
-
-def test_scan_array_with_braces():
-    text = '{"items": [{"x": 1}, {"x": 2}]}'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
-    assert end == len(text)
-
-
-def test_scan_code_in_string():
-    text = '{"fn": "function() { return 1; }"}'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
-
-
-def test_scan_unicode_chars():
-    text = '{"key": "\u5317\u4eac"}'
-    end, complete = _scan_json(text, 0)
-    assert complete is True
 
 
 def test_find_single_tool_call():
@@ -141,10 +102,7 @@ def test_find_arguments_with_array():
 
 
 def test_find_arguments_with_nested_array_of_objects():
-    text = (
+    text = '{"name": "batch", "arguments": {"rows": [{"id": 1, "val": "a"}, {"id": 2, "val": "b"}]}}'
-        '{"name": "batch", '
-        '"arguments": {"rows": [{"id": 1, "val": "a"}, {"id": 2, "val": "b"}]}}'
-    )
     results = _find_tool_calls(text)
     assert len(results) == 1
     assert '"rows"' in results[0]["args"]
@@ -206,38 +164,26 @@ def test_find_extracts_correct_arg_start_position():
     assert json_str == text
 
 
-def test_partial_with_name():
+@pytest.mark.parametrize(
-    result = _find_partial_tool_call('{"name": "func", "arguments": {"city"')
+    "text,expected_name,expected_complete",
-    assert result is not None
+    [
-    assert result["name"] == "func"
+        ('{"name": "func", "arguments": {"city"', "func", False),
-    assert result["complete"] is False
+        ('{"name": "func", "arguments": {"city": "BJ"}}', "func", None),
-
+        ("plain text", None, None),
-
+        ('{"nam', None, None),
-def test_partial_with_full_args():
+        ('{"name": "deep", "arguments": {"a": {"b": {"c": ', "deep", None),
-    result = _find_partial_tool_call('{"name": "func", "arguments": {"city": "BJ"}}')
+        ('{"name": "batch", "arguments": {"items": [1, 2, ', "batch", None),
-    assert result is not None
+    ],
-    assert result["name"] == "func"
+)
-
+def test_find_partial_tool_call(text, expected_name, expected_complete):
-
+    result = _find_partial_tool_call(text)
-def test_partial_no_match():
+    if expected_name is None:
-    assert _find_partial_tool_call("plain text") is None
+        assert result is None
-
+    else:
-
+        assert result is not None
-def test_partial_no_name_yet():
+        assert result["name"] == expected_name
-    assert _find_partial_tool_call('{"nam') is None
+        if expected_complete is not None:
-
+            assert result["complete"] is expected_complete
-
-def test_partial_deeply_nested():
-    result = _find_partial_tool_call('{"name": "deep", "arguments": {"a": {"b": {"c": ')
-    assert result is not None
-    assert result["name"] == "deep"
-    assert '"a"' in result["args"]
-
-
-def test_partial_array_incomplete():
-    result = _find_partial_tool_call('{"name": "batch", "arguments": {"items": [1, 2, ')
-    assert result is not None
-    assert result["name"] == "batch"
 
 
 def test_feed_plain_text():
@@ -269,7 +215,6 @@ def test_feed_tool_call_args_streaming():
     parser = SimpleJsonToolParser()
     d1 = parser.feed('{"name": "f", "arguments": {"x":')
     d2 = parser.feed('{"name": "f", "arguments": {"x": "1"}}')
-
     args_deltas = [
         d
         for batch in (d1, d2)
@@ -332,17 +277,6 @@ def test_feed_content_after_tool_call_is_not_emitted():
     assert parser.has_tool_calls
 
 
-def _collect_args_deltas(parser):
-    args_parts = []
-    for d in parser.feed(parser._text_buffer):
-        if "tool_calls" in d:
-            for tc in d["tool_calls"]:
-                fn = tc.get("function", {})
-                if "arguments" in fn and fn["arguments"]:
-                    args_parts.append(fn["arguments"])
-    return args_parts
-
-
 def _simulate_streaming(parser, text):
     all_delta_names = []
     all_args_chunks = []
@@ -447,7 +381,6 @@ def test_streaming_args_diff_only_emits_new_bytes():
     parser = SimpleJsonToolParser()
     step1 = parser.feed('{"name": "f", "arguments": {"city": "Bei')
     step2 = parser.feed('{"name": "f", "arguments": {"city": "Beijing"}}')
-
     all_args = []
     for step in (step1, step2):
         for d in step:
@@ -500,31 +433,21 @@ def test_parse_complete_with_content():
 
 def test_parse_complete_multiple_tool_calls():
     parser = SimpleJsonToolParser()
-    body = (
+    body = '{"name": "get_weather", "arguments": {"city": "Beijing"}}{"name": "get_time", "arguments": {"tz": "Asia/Shanghai"}}'
-        '{"name": "get_weather", "arguments": {"city": "Beijing"}}'
-        '{"name": "get_time", "arguments": {"tz": "Asia/Shanghai"}}'
-    )
     result = parser.parse_complete(body)
     assert result is not None
     assert len(result["tool_calls"]) == 2
     assert result["tool_calls"][0]["function"]["name"] == "get_weather"
     assert result["tool_calls"][1]["function"]["name"] == "get_time"
-    assert "Beijing" in result["tool_calls"][0]["function"]["arguments"]
-    assert "Asia/Shanghai" in result["tool_calls"][1]["function"]["arguments"]
 
 
 def test_parse_complete_complex_real_world():
     parser = SimpleJsonToolParser()
     body = (
-        '{"name": "send_email", '
+        '{"name": "send_email", "arguments": {'
-        '"arguments": {'
+        '"to": ["a@b.com", "c@d.com"], "cc": null, '
-        '"to": ["a@b.com", "c@d.com"], '
+        '"subject": "Hello World", "body": "This is a test email.", '
-        '"cc": null, '
+        '"priority": 1, "attachments": false}}'
-        '"subject": "Hello World", '
-        '"body": "This is a test email.", '
-        '"priority": 1, '
-        '"attachments": false'
-        "}}"
     )
     result = parser.parse_complete(body)
     assert result is not None
@@ -539,11 +462,7 @@ def test_parse_complete_complex_real_world():
 
 def test_parse_complete_content_with_multiple_tool_calls():
     parser = SimpleJsonToolParser()
-    body = (
+    body = 'I will do two things. {"name": "f1", "arguments": {"a": 1}}{"name": "f2", "arguments": {"b": 2}}'
-        "I will do two things. "
-        '{"name": "f1", "arguments": {"a": 1}}'
-        '{"name": "f2", "arguments": {"b": 2}}'
-    )
     result = parser.parse_complete(body)
     assert result is not None
     assert result["content"] == "I will do two things."
@@ -588,30 +507,29 @@ def test_feed_then_parse_complete_same_instance():
     assert parser.has_tool_calls
 
 
-def test_pattern_matches_basic():
+@pytest.mark.parametrize(
-    assert _TOOL_CALL_HEAD_RE.search('{"name": "f"}')
+    "text,matches",
-
+    [
-
+        ('{"name": "f"}', True),
-def test_pattern_matches_with_whitespace():
+        ('{ "name" : "f"}', True),
-    assert _TOOL_CALL_HEAD_RE.search('{ "name" : "f"}')
+        ('{"other": 1}', False),
-
+        ('prefix {"name": "f", "args": {}}', True),
-
+        ('{"name": "f"}', True),  # match at start
-def test_pattern_no_match_without_name():
+        ('   {"name": "f"}', True),
-    assert _TOOL_CALL_HEAD_RE.search('{"other": 1}') is None
+    ],
-
+)
-
+def test_pattern_regex(text, matches):
-def test_pattern_match_mid_text():
+    result = _TOOL_CALL_HEAD_RE.search(text)
-    assert _TOOL_CALL_HEAD_RE.search('prefix {"name": "f", "args": {}}') is not None
+    if matches:
+        assert result is not None
+    else:
+        assert result is None
 
 
 def test_pattern_name_at_start():
     assert _TOOL_CALL_HEAD_RE.match('{"name": "f"}')
 
 
-def test_pattern_leading_whitespace():
-    assert _TOOL_CALL_HEAD_RE.search('   {"name": "f"}') is not None
-
-
 def test_factory_register_and_create():
     parser = ToolParserFactory.create("simple_json")
     assert isinstance(parser, BaseToolParser)
@@ -661,7 +579,6 @@ def test_feed_token_ids_do_not_affect_parsing():
         text, current_token_ids=[1, 2, 3], delta_token_ids=[3]
     )
     assert len(result_no) == len(result_with)
-    assert len(result_no) > 0
     assert (
         result_no[0]["tool_calls"][0]["function"]["name"]
         == result_with[0]["tool_calls"][0]["function"]["name"]

tests/module/test_encoder.py

@@ -1,6 +1,13 @@
+import json
+import os
+import tempfile
+
+import pytest
+import safetensors.torch as st
 import torch
 
 from astrai.config.model_config import EncoderConfig
+from astrai.model.automodel import AutoModel
 from astrai.model.encoder import EmbeddingEncoder
 
 TINY_CONFIG = dict(
@@ -14,92 +21,56 @@ TINY_CONFIG = dict(
     norm_eps=1e-5,
 )
 
+_device = "cuda" if torch.cuda.is_available() else "cpu"
 
-def test_encoder_forward_mean():
+
-    config = EncoderConfig(**TINY_CONFIG)
+def _make_model(**kwargs):
-    device = "cuda" if torch.cuda.is_available() else "cpu"
+    config = EncoderConfig(**{**TINY_CONFIG, **kwargs})
-    model = EmbeddingEncoder(config).to(device=device)
+    return EmbeddingEncoder(config).to(device=_device)
+
+
+@pytest.mark.parametrize("pooling_type", ["mean", "cls", "last"])
+def test_encoder_forward_pooling(pooling_type):
+    model = _make_model(pooling_type=pooling_type)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
 
     with torch.no_grad():
         output = model(input_ids)
 
-    assert output.shape == (batch_size, config.dim)
+    assert output.shape == (batch_size, TINY_CONFIG["dim"])
-    assert not torch.isnan(output).any()
-
-
-def test_encoder_forward_cls():
-    config = EncoderConfig(**{**TINY_CONFIG, "pooling_type": "cls"})
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-    model.eval()
-
-    batch_size, seq_len = 2, 8
-    input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
-    )
-
-    with torch.no_grad():
-        output = model(input_ids)
-
-    assert output.shape == (batch_size, config.dim)
-    assert not torch.isnan(output).any()
-
-
-def test_encoder_forward_last():
-    config = EncoderConfig(**{**TINY_CONFIG, "pooling_type": "last"})
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-    model.eval()
-
-    batch_size, seq_len = 2, 8
-    input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
-    )
-
-    with torch.no_grad():
-        output = model(input_ids)
-
-    assert output.shape == (batch_size, config.dim)
     assert not torch.isnan(output).any()
 
 
 def test_encoder_forward_with_padding():
-    config = EncoderConfig(**TINY_CONFIG)
+    model = _make_model()
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
-    input_mask = torch.ones(batch_size, seq_len, dtype=torch.bool, device=device)
+    input_mask = torch.ones(batch_size, seq_len, dtype=torch.bool, device=_device)
     input_mask[:, 4:] = False
 
     with torch.no_grad():
         output = model(input_ids, input_mask=input_mask)
 
-    assert output.shape == (batch_size, config.dim)
+    assert output.shape == (batch_size, TINY_CONFIG["dim"])
     assert not torch.isnan(output).any()
 
 
 def test_encoder_normalize():
-    config = EncoderConfig(
+    model = _make_model(pooling_type="mean", normalize_embeddings=True)
-        **{**TINY_CONFIG, "pooling_type": "mean", "normalize_embeddings": True}
-    )
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
     model.eval()
 
     batch_size, seq_len = 2, 8
     input_ids = torch.randint(
-        0, config.vocab_size, (batch_size, seq_len), device=device
+        0, TINY_CONFIG["vocab_size"], (batch_size, seq_len), device=_device
     )
 
     with torch.no_grad():
@@ -110,24 +81,19 @@ def test_encoder_normalize():
 
 
 def test_encoder_register():
-    from astrai.model.automodel import AutoModel
-
     assert AutoModel.is_registered("embedding")
     cls = AutoModel.get_component_class("embedding")
     assert cls is EmbeddingEncoder
 
 
 def test_encoder_from_transformer_checkpoint():
-    config = EncoderConfig(**TINY_CONFIG)
+    model = _make_model()
-    device = "cuda" if torch.cuda.is_available() else "cpu"
-    model = EmbeddingEncoder(config).to(device=device)
-
     state_dict = model.state_dict()
     state_dict["lm_head.weight"] = torch.randn(
-        config.vocab_size, config.dim, device=device
+        TINY_CONFIG["vocab_size"], TINY_CONFIG["dim"], device=_device
     )
 
-    new_model = EmbeddingEncoder(config).to(device=device)
+    new_model = _make_model()
     new_model.load_state_dict(state_dict, strict=True)
 
     for key in model.state_dict():
@@ -135,12 +101,6 @@ def test_encoder_from_transformer_checkpoint():
 
 
 def test_encoder_save_load():
-    import json
-    import os
-    import tempfile
-
-    import safetensors.torch as st
-
     test_dir = tempfile.mkdtemp(prefix="encoder_test_")
     config_path = os.path.join(test_dir, "config.json")
     weights_path = os.path.join(test_dir, "model.safetensors")

tests/trainer/conftest.py

@@ -52,7 +52,7 @@ def create_train_config(
         batch_per_device: Batch size per device (default: 2)
         grad_accum_steps: Gradient accumulation steps (default: 1)
         max_grad_norm: Maximum gradient norm for clipping (default: 1.0)
-        ckpt_interval: Checkpoint save interval in iterations (default: 5)
+        ckpt_interval: Checkpoint save interval in optimizer steps (default: 5)
         random_seed: Random seed for reproducibility (default: 42)
         **kwargs: Additional arguments passed to TrainConfig
 

tests/trainer/test_early_stopping.py

@@ -44,14 +44,14 @@ def test_early_stopping_simulation(base_test_env, early_stopping_dataset):
         pass
 
     # Resume from latest checkpoint
-    load_dir = os.path.join(base_test_env["test_dir"], "epoch_0_iter_2")
+    load_dir = os.path.join(base_test_env["test_dir"], "epoch_0_step_1")
     trainer = Trainer(train_config)
     trainer.train(resume_dir=load_dir)
 
-    # Verify checkpoint was saved at expected iteration
+    # Verify checkpoint was saved at expected step
-    load_dir = os.path.join(base_test_env["test_dir"], "epoch_1_iter_10")
+    load_dir = os.path.join(base_test_env["test_dir"], "epoch_1_step_5")
     import json
 
     with open(os.path.join(load_dir, "meta.json")) as f:
         meta = json.load(f)
-    assert meta["iteration"] == 10
+    assert meta["consumed_samples"] == 20